F299210

General Info

Members Datasets Scaffolds Average Seq Length
194 156 388 364

Family's Representative Sequence

Representative Sequence 3300048924|Ga0496121_0001887|Ga0496121_0001887_16560_17858
Length 432
Sequence MAPLIEGSIKGDIPELLAEVCFAPKVEFAHLCVHALVYLPYPSTRFAVRLSTHVVQIQVREPADHVTIENDVPAAPSPRSRKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSRERGVVAAASYEARTFGVRSAMPSVTAKRQCPDLIFVKPRFEVYKAVSQQIREIFAEHTAIIEPLSLDEAYLDVTENLQNIALARDVALAIRARIKQVTGLNASAGISYNKFLAKLASDYRKPNGQYVITPEMGPAFVEALPVGKFHGIGPATSAKMNALGLHTGLDMRNQSLEFMQVHFGKAGAYYYWISRGVDNREVRADRIRKSVGAETTFSTDLTAFDAMVAELQPLIDKVWRHCEDKGARGRTVTLKVKFNDFEIITRSRSIPVAVSSRSELERLSVALLQNEMPFPKPVRLLGVSLSALQGDIESEPQLDLPI

Samples

Sample ID Description Type Environment
1 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
12 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
13 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
14 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
21 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
27 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
37 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
38 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
54 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
55 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
56 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
57 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
58 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
59 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
60 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
61 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
64 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
65 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
66 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
67 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
70 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
71 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
72 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
73 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
74 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
75 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
76 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
77 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
78 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
79 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
80 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
81 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
82 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
83 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
84 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
85 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
86 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
87 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
88 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
89 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
90 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
91 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
92 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
93 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
94 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
95 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
96 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
97 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
98 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
101 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
102 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
105 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
110 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
111 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
112 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
113 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
114 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
115 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
116 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
117 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
118 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
119 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
120 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
121 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
122 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
123 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
124 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
125 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
126 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
127 2513237096 Bradyrhizobium pachyrhizi USDA 3259 Isolate Nodule
128 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
129 2513237145 Bradyrhizobium elkanii USDA 3254 Isolate Nodule
130 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
131 2841966195 Bradyrhizobium sp. CIR18 Isolate Nodule
132 2844315083 Bradyrhizobium guangzhouense CCBAU 51670 Isolate Unclassified
133 2874612657 Bradyrhizobium forestalis INPA54B Isolate Nodule
134 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
135 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
136 2903768456 Bradyrhizobium sp. Leo121 Isolate Unclassified
137 2904699407
138 2906610324
139 2906626472 Bradyrhizobium hipponense aSej3 Isolate Unclassified
140 2929615660 Bradyrhizobium japonicum TXVA Isolate Nodule
141 2929624759 Bradyrhizobium japonicum TXEA Isolate Nodule
142 2932809354 Bradyrhizobium sp. S3.5.5 Isolate Nodule
143 2933577622 Bradyrhizobium japonicum SEMIA 417 Isolate Nodule
144 2935694250 Bradyrhizobium sp. LA6.1 Isolate Nodule
145 2935732158 Bradyrhizobium sp. LA6.4 Isolate Nodule
146 2935741537 Bradyrhizobium sp. LA6.7 Isolate Nodule
147 2935760218 Bradyrhizobium sp. LA7.1 Isolate Nodule
148 2935769743 Bradyrhizobium sp. LB12.1 Isolate Nodule
149 2935801545 Bradyrhizobium sp. RT10b Isolate Nodule
150 2935873716 Bradyrhizobium sp. RT9b Isolate Nodule
151 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
152 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified
153 8016603502 Bradyrhizobium sp. LB7.2 Isolate Nodule
154 8019555841 Bradyrhizobium sp. JR6.1 Isolate Nodule
155 8019565922 Bradyrhizobium sp. JR3.5 Isolate Nodule
156 8055742211 Bradyrhizobium japonicum 5038 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 83.77
Metatranscriptomes 0
Isolates 16.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.46
Nodule 12.89
Rhizoplane 2.06
Rhizosphere 58.25
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496121_0001887 3300048924 Bacteria 33578
2 rootH2_10112713 3300003320 Bacteria 6453
3 JGI25404J52841_10000882 3300003659 Bacteria 4854
4 Ga0070683_100171053 3300005329 Bacteria 2062
5 Ga0070668_100021620 3300005347 Bacteria 4860
6 Ga0070668_100025303 3300005347 Bacteria 4499
7 Ga0070668_100029277 3300005347 Bacteria 4182
8 Ga0070668_100215769 3300005347 Bacteria 1580
9 Ga0070668_100254350 3300005347 Bacteria 1459
10 Ga0070674_100001184 3300005356 Bacteria 13696
11 Ga0070674_100016114 3300005356 Bacteria 4682
12 Ga0070674_100140520 3300005356 Bacteria 1812
13 Ga0070667_100256792 3300005367 Bacteria 1564
14 Ga0070711_100122735 3300005439 Bacteria 1924
15 Ga0070700_100030138 3300005441 Bacteria 3239
16 Ga0070663_100016482 3300005455 Bacteria 4801
17 Ga0070663_100086374 3300005455 Bacteria 2316
18 Ga0070663_100097980 3300005455 Bacteria 2183
19 Ga0070662_100002941 3300005457 Bacteria 10593
20 Ga0068867_100031818 3300005459 Bacteria 3812
21 Ga0070697_100036772 3300005536 Bacteria 3955
22 Ga0070697_100286571 3300005536 Bacteria 1414
23 Ga0070695_100164097 3300005545 Bacteria 1562
24 Ga0070665_100002160 3300005548 Bacteria 21934
25 Ga0070665_100067636 3300005548 Bacteria 3582
26 Ga0070665_100245706 3300005548 Bacteria 1790
27 Ga0068857_100031770 3300005577 Bacteria 4666
28 Ga0068859_100279909 3300005617 Bacteria 1761
29 Ga0068858_100093946 3300005842 Bacteria 2793
30 Ga0068860_100000363 3300005843 Bacteria 60070
31 Ga0068862_100078623 3300005844 Bacteria 2858
32 Ga0081540_1010840 3300005983 Bacteria 6126
33 Ga0075365_10027212 3300006038 Bacteria 3635
34 Ga0075365_10118843 3300006038 Bacteria 1822
35 Ga0075369_10001733 3300006186 Bacteria 7545
36 Ga0075366_10000919 3300006195 Bacteria 14269
37 Ga0075430_100226717 3300006846 Bacteria 1550
38 Ga0075431_100075821 3300006847 Bacteria 3470
39 Ga0075434_100125145 3300006871 Bacteria 2588
40 Ga0097620_100279899 3300006931 Bacteria 1761
41 Ga0105243_10004701 3300009148 Bacteria 10749
42 Ga0105237_10006329 3300009545 Bacteria 13159
43 Ga0105249_10336356 3300009553 Bacteria 1525
44 Ga0099796_10003101 3300010159 Bacteria 3790
45 Ga0105239_10077675 3300010375 Bacteria 3654
46 Ga0157378_10002726 3300013297 Bacteria 15728
47 Ga0163162_10247520 3300013306 Bacteria 1914
48 Ga0163162_10433617 3300013306 Bacteria 1446
49 Ga0163162_10534675 3300013306 Bacteria 1301
50 Ga0157380_10041891 3300014326 Bacteria 3576
51 Ga0213874_10017803 3300021377 Bacteria 1912
52 Ga0209148_1000551 3300025254 Bacteria 35578
53 Ga0209564_1000290 3300025295 Bacteria 101964
54 Ga0207671_10095171 3300025914 Bacteria 2249
55 Ga0207693_10103595 3300025915 Bacteria 2232
56 Ga0207709_10005924 3300025935 Bacteria 6897
57 Ga0207691_10044017 3300025940 Bacteria 4111
58 Ga0207712_10004453 3300025961 Bacteria 8846
59 Ga0207668_10010599 3300025972 Bacteria 5576
60 Ga0207668_10030989 3300025972 Bacteria 3518
61 Ga0207668_10051049 3300025972 Bacteria 2854
62 Ga0207668_10322123 3300025972 Bacteria 1283
63 Ga0207658_10131106 3300025986 Bacteria 2014
64 Ga0207678_10136724 3300026067 Bacteria 2091
65 Ga0207674_10042902 3300026116 Bacteria 4667
66 Ga0207675_100041150 3300026118 Bacteria 4315
67 Ga0268266_10002608 3300028379 Bacteria 19099
68 Ga0268266_10046313 3300028379 Bacteria 3723
69 Ga0268266_10275030 3300028379 Bacteria 1564
70 Ga0268265_10036191 3300028380 Bacteria 3614
71 Ga0268264_10000260 3300028381 Bacteria 94934
72 Ga0265337_1008414 3300028556 Bacteria 3753
73 Ga0265326_10014512 3300028558 Bacteria 2294
74 Ga0265319_1011847 3300028563 Bacteria 3549
75 Ga0265334_10000565 3300028573 Bacteria 18826
76 Ga0265318_10005782 3300028577 Bacteria 5771
77 Ga0265336_10000408 3300028666 Bacteria 26803
78 Ga0307515_10116537 3300028794 Bacteria 3066
79 Ga0265338_10000078 3300028800 Bacteria 177516
80 Ga0265324_10000636 3300029957 Bacteria 23812
81 Ga0307408_100158617 3300031548 Bacteria 1794
82 Ga0307508_10012913 3300031616 Bacteria 7637
83 Ga0265314_10000530 3300031711 Bacteria 49260
84 Ga0265314_10016896 3300031711 Bacteria 5747
85 Ga0265314_10041135 3300031711 Bacteria 3311
86 Ga0265342_10052592 3300031712 Bacteria 2427
87 Ga0307516_10004123 3300031730 Bacteria 18124
88 Ga0307516_10021227 3300031730 Bacteria 6690
89 Ga0307405_10230880 3300031731 Bacteria 1364
90 Ga0307406_10077938 3300031901 Bacteria 2194
91 Ga0307412_10211831 3300031911 Bacteria 1479
92 Ga0307510_10029393 3300033180 Bacteria 6257
93 Ga0373943_0054140 3300035170 Bacteria 1984
94 Ga0373924_0047690 3300035410 Bacteria 1768
95 Ga0373925_0033796 3300037068 Bacteria 3768
96 Ga0436363_1694714 3300039450 Bacteria 4131
97 Ga0466961_0000178 3300044693 Bacteria 43133
98 Ga0466959_0043235 3300045049 Bacteria 3322
99 Ga0495603_0017041 3300046455 Bacteria 4397
100 Ga0495629_0058747 3300046459 Bacteria 2689
101 Ga0495650_0024705 3300046471 Bacteria 2834
102 Ga0495580_0054919 3300046472 Bacteria 2808
103 Ga0495607_0019710 3300046501 Bacteria 4279
104 Ga0495607_0133988 3300046501 Bacteria 1285
105 Ga0495620_0078994 3300046515 Bacteria 1333
106 Ga0495631_0033335 3300046518 Bacteria 2314
107 Ga0495632_0010606 3300046519 Bacteria 5439
108 Ga0495666_0036506 3300046526 Bacteria 2394
109 Ga0495654_0008970 3300046530 Bacteria 5493
110 Ga0495665_0117153 3300046531 Bacteria 1395
111 Ga0495622_0044059 3300046557 Bacteria 2074
112 Ga0495667_0126739 3300046559 Bacteria 1647
113 Ga0495656_0037012 3300046615 Bacteria 2013
114 Ga0495668_0002494 3300046616 Bacteria 15059
115 Ga0495625_0024053 3300046660 Bacteria 4643
116 Ga0495625_0064472 3300046660 Bacteria 2584
117 Ga0495661_0002896 3300046665 Bacteria 12980
118 Ga0495661_0059258 3300046665 Bacteria 2279
119 Ga0495588_0002808 3300046674 Bacteria 7484
120 Ga0495647_0005278 3300046681 Bacteria 4231
121 Ga0495671_0052423 3300046692 Bacteria 2028
122 Ga0495660_0122223 3300046810 Bacteria 1316
123 Ga0495680_0182779 3300047322 Bacteria 1512
124 Ga0495686_0050870 3300047472 Bacteria 2602
125 Ga0496102_0091733 3300048905 Bacteria 2812
126 Ga0496105_0059473 3300048908 Bacteria 3153
127 Ga0496113_0058383 3300048916 Bacteria 2903
128 Ga0496117_0125947 3300048920 Bacteria 1563
129 Ga0496117_0159792 3300048920 Bacteria 1322
130 Ga0496118_0118665 3300048921 Bacteria 1732
131 Ga0496125_0157815 3300048928 Bacteria 1546
132 Ga0496126_0069194 3300048929 Bacteria 3149
133 Ga0496126_0145838 3300048929 Bacteria 2033
134 Ga0501038_0008731 3300049574 Bacteria 9300
135 Ga0501047_0031265 3300049581 Bacteria 5135
136 Ga0501044_0037916 3300049823 Bacteria 5036
137 nmdc:mga0yw44_117172_c1 3300050492 Bacteria 1712
138 nmdc:mga0k408_1152_c1 3300050493 Bacteria 14454
139 nmdc:mga06z11_75165_c1 3300050494 Bacteria 1798
140 nmdc:mga07m45_1282_c1 3300050496 Bacteria 11444
141 nmdc:mga0sz30_1696_c1 3300050516 Bacteria 7827
142 Ga0500651_0059673 3300053093 Bacteria 2385
143 Ga0500651_0069061 3300053093 Bacteria 2200
144 Ga0500641_0000215 3300053096 Bacteria 21838
145 Ga0500641_0002211 3300053096 Bacteria 6880
146 Ga0500562_000451 3300053108 Bacteria 10026
147 Ga0500595_001433 3300053119 Bacteria 12791
148 Ga0500595_002028 3300053119 Bacteria 10347
149 Ga0500595_004042 3300053119 Bacteria 6682
150 Ga0500595_005290 3300053119 Bacteria 5656
151 Ga0500595_014339 3300053119 Bacteria 3008
152 Ga0500608_046021 3300053122 Bacteria 2096
153 Ga0500614_020743 3300053123 Bacteria 1520
154 Ga0500652_000248 3300053131 Bacteria 20322
155 Ga0500559_0012415 3300053136 Bacteria 3621
156 Ga0500568_0000115 3300053139 Bacteria 72862
157 Ga0500604_0000069 3300053151 Bacteria 37014
158 Ga0500604_0013868 3300053151 Bacteria 2188
159 Ga0500619_016508 3300053154 Bacteria 2033
160 Ga0500636_0001017 3300053177 Bacteria 15030
161 2513654850 2513237096 Bacteria 8722461
162 2513679629 2513237098 Bacteria 9902361
163 2513916127 2513237145 Bacteria 8979722
164 2603857041 2602042107 Bacteria 6226103
165 2841971593 2841966195 Bacteria 8673214
166 2844315285 2844315083 Bacteria 8138177
167 2874618748 2874612657 Bacteria 8252029
168 2891373992 2891373044 Bacteria 5202277
169 2903758390 2903748898 Bacteria 9972761
170 2903770354 2903768456 Bacteria 9749579
171 2904700790
172 2904706332
173 2906618890
174 2906629526 2906626472 Bacteria 8826946
175 2929620227 2929615660 Bacteria 9193770
176 2929629541 2929624759 Bacteria 9339455
177 2932810656 2932809354 Bacteria 9135765
178 2932816146 2932809354 Bacteria 9135765
179 2933582145 2933577622 Bacteria 9116884
180 2935703008 2935694250 Bacteria 9291695
181 2935739380 2935732158 Bacteria 9706831
182 2935748418 2935741537 Bacteria 9707219
183 2935764863 2935760218 Bacteria 9817913
184 2935767910 2935760218 Bacteria 9817913
185 2935769586 2935760218 Bacteria 9817913
186 2935777327 2935769743 Bacteria 7878163
187 2935810346 2935801545 Bacteria 9301974
188 2935882397 2935873716 Bacteria 9632195
189 3005477805 3005474847 Bacteria 9259049
190 8006994072 8006984368 Bacteria 9651211
191 8016612976 8016603502 Bacteria 8731218
192 8019560289 8019555841 Bacteria 9642137
193 8019570393 8019565922 Bacteria 9639779
194 8055750019 8055742211 Bacteria 9226248
195 Ga0496121_0001887
196 rootH2_10112713
197 JGI25404J52841_10000882
198 Ga0070683_100171053
199 Ga0070668_100021620
200 Ga0070668_100025303
201 Ga0070668_100029277
202 Ga0070668_100215769
203 Ga0070668_100254350
204 Ga0070674_100001184
205 Ga0070674_100016114
206 Ga0070674_100140520
207 Ga0070667_100256792
208 Ga0070711_100122735
209 Ga0070700_100030138
210 Ga0070663_100016482
211 Ga0070663_100086374
212 Ga0070663_100097980
213 Ga0070662_100002941
214 Ga0068867_100031818
215 Ga0070697_100036772
216 Ga0070697_100286571
217 Ga0070695_100164097
218 Ga0070665_100002160
219 Ga0070665_100067636
220 Ga0070665_100245706
221 Ga0068857_100031770
222 Ga0068859_100279909
223 Ga0068858_100093946
224 Ga0068860_100000363
225 Ga0068862_100078623
226 Ga0081540_1010840
227 Ga0075365_10027212
228 Ga0075365_10118843
229 Ga0075369_10001733
230 Ga0075366_10000919
231 Ga0075430_100226717
232 Ga0075431_100075821
233 Ga0075434_100125145
234 Ga0097620_100279899
235 Ga0105243_10004701
236 Ga0105237_10006329
237 Ga0105249_10336356
238 Ga0099796_10003101
239 Ga0105239_10077675
240 Ga0157378_10002726
241 Ga0163162_10247520
242 Ga0163162_10433617
243 Ga0163162_10534675
244 Ga0157380_10041891
245 Ga0213874_10017803
246 Ga0209148_1000551
247 Ga0209564_1000290
248 Ga0207671_10095171
249 Ga0207693_10103595
250 Ga0207709_10005924
251 Ga0207691_10044017
252 Ga0207712_10004453
253 Ga0207668_10010599
254 Ga0207668_10030989
255 Ga0207668_10051049
256 Ga0207668_10322123
257 Ga0207658_10131106
258 Ga0207678_10136724
259 Ga0207674_10042902
260 Ga0207675_100041150
261 Ga0268266_10002608
262 Ga0268266_10046313
263 Ga0268266_10275030
264 Ga0268265_10036191
265 Ga0268264_10000260
266 Ga0265337_1008414
267 Ga0265326_10014512
268 Ga0265319_1011847
269 Ga0265334_10000565
270 Ga0265318_10005782
271 Ga0265336_10000408
272 Ga0307515_10116537
273 Ga0265338_10000078
274 Ga0265324_10000636
275 Ga0307408_100158617
276 Ga0307508_10012913
277 Ga0265314_10000530
278 Ga0265314_10016896
279 Ga0265314_10041135
280 Ga0265342_10052592
281 Ga0307516_10004123
282 Ga0307516_10021227
283 Ga0307405_10230880
284 Ga0307406_10077938
285 Ga0307412_10211831
286 Ga0307510_10029393
287 Ga0373943_0054140
288 Ga0373924_0047690
289 Ga0373925_0033796
290 Ga0436363_1694714
291 Ga0466961_0000178
292 Ga0466959_0043235
293 Ga0495603_0017041
294 Ga0495629_0058747
295 Ga0495650_0024705
296 Ga0495580_0054919
297 Ga0495607_0019710
298 Ga0495607_0133988
299 Ga0495620_0078994
300 Ga0495631_0033335
301 Ga0495632_0010606
302 Ga0495666_0036506
303 Ga0495654_0008970
304 Ga0495665_0117153
305 Ga0495622_0044059
306 Ga0495667_0126739
307 Ga0495656_0037012
308 Ga0495668_0002494
309 Ga0495625_0024053
310 Ga0495625_0064472
311 Ga0495661_0002896
312 Ga0495661_0059258
313 Ga0495588_0002808
314 Ga0495647_0005278
315 Ga0495671_0052423
316 Ga0495660_0122223
317 Ga0495680_0182779
318 Ga0495686_0050870
319 Ga0496102_0091733
320 Ga0496105_0059473
321 Ga0496113_0058383
322 Ga0496117_0125947
323 Ga0496117_0159792
324 Ga0496118_0118665
325 Ga0496125_0157815
326 Ga0496126_0069194
327 Ga0496126_0145838
328 Ga0501038_0008731
329 Ga0501047_0031265
330 Ga0501044_0037916
331 nmdc:mga0yw44_117172_c1
332 nmdc:mga0k408_1152_c1
333 nmdc:mga06z11_75165_c1
334 nmdc:mga07m45_1282_c1
335 nmdc:mga0sz30_1696_c1
336 Ga0500651_0059673
337 Ga0500651_0069061
338 Ga0500641_0000215
339 Ga0500641_0002211
340 Ga0500562_000451
341 Ga0500595_001433
342 Ga0500595_002028
343 Ga0500595_004042
344 Ga0500595_005290
345 Ga0500595_014339
346 Ga0500608_046021
347 Ga0500614_020743
348 Ga0500652_000248
349 Ga0500559_0012415
350 Ga0500568_0000115
351 Ga0500604_0000069
352 Ga0500604_0013868
353 Ga0500619_016508
354 Ga0500636_0001017
355 2513654850
356 2513679629
357 2513916127
358 2603857041
359 2841971593
360 2844315285
361 2874618748
362 2891373992
363 2903758390
364 2903770354
365 2904700790
366 2904706332
367 2906618890
368 2906629526
369 2929620227
370 2929629541
371 2932810656
372 2932816146
373 2933582145
374 2935703008
375 2935739380
376 2935748418
377 2935764863
378 2935767910
379 2935769586
380 2935777327
381 2935810346
382 2935882397
383 3005477805
384 8006994072
385 8016612976
386 8019560289
387 8019570393
388 8055750019

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00817

IMS

impB/mucB/samB family

86

232

0.99

PF11799

IMS_C

impB/mucB/samB family C-terminal domain

318

430

0.96

PF11798

IMS_HHH

IMS family HHH motif

244

275

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1im4-assembly1.cif.gz_A crystal structure of a dinb homolog (dbh) lesion bypass dna polymerase catalytic fragment from sulfolobus solfataricus 0.9312 12 209
4dez-assembly1.cif.gz_A structure of msdpo4 0.9116 13 245
4dez-assembly1.cif.gz_A structure of msdpo4 0.9003 13 245
1im4-assembly1.cif.gz_A crystal structure of a dinb homolog (dbh) lesion bypass dna polymerase catalytic fragment from sulfolobus solfataricus 0.8964 12 209
4q45-assembly1.cif.gz_F dna polymerase- damaged dna complex 0.8838 12 350
ID Description Score Start End Superfamily
3gqcD03 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9791 186 237 1.10.150.20
3gqcC03 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9789 186 237 1.10.150.20
5yuvF03 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9723 186 239 1.10.150.20
af_Q9UBZ9_643_696_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.971 186 237 1.10.150.20
5c5jA03 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9695 186 239 1.10.150.20
ID Description Score Start End GO Terms
AF-A0A6G1V7V9-F1-model_v4 deleted 0.9945 11 198
AF-A0A149VIF3-F1-model_v4 deleted 0.9883 19 109
AF-A0A7R9A0P7-F1-model_v4 DNA polymerase kappa (EC 2.7.7.7) 0.9799 67 243 GO:0003677
GO:0003887
GO:0005829
GO:0006260
GO:0042276
GO:0046872
AF-A0A6G1V7V9-F1-model_v4 deleted 0.979 11 198
AF-K8P2T8-F1-model_v4 DNA polymerase IV 2 0.9748 39 192 GO:0003887
GO:0005829
GO:0009432
GO:0042276

Map