F298907

General Info

Members Datasets Scaffolds Average Seq Length
194 103 388 369

Family's Representative Sequence

Representative Sequence 3300035118|Ga0373954_0049106|Ga0373954_0049106_276_1460
Length 394
Sequence MRAEGAQTTQLLPVDGQAGTCDKVFNGVMKKILVIDDEQWLREMMQLALRQRGFEIVEAENGEKGIEIARKELPDLILCDVNMEKVDGYLTLSSLRGEPSTASIPFILMTGLADHAGMRHGMELGADDYLPKPFTIEALYATVDARLKKVNVVRQEAEKKLADLRENISMMLPHELRTPLNGILAYGEILTSDASTLQPAEIAEMGQVIHDSGKRLERLVENFLIYAQLELLGADPQKLHSLLRKQTQFPARVIEKHARDQAHLAGRPADLVLELSDVPVPMSEEYLAKVLEELVQNAFKFSTPNSPVKASLADASDAVVLSVTDRGRGLSTEHITKIGAYMQFDRKMHEQQGLGLGLTICKRLTELHGGTLVIQSEPGVGSTVTVKLPKVSAS

Samples

Sample ID Description Type Environment
1 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
11 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
19 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
26 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
27 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
28 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
40 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
41 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
42 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
43 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
46 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
47 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
48 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
49 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
50 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
51 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
52 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
53 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
54 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
55 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
56 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
57 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
58 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
59 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
60 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
61 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
62 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
63 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
64 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
65 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
66 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
67 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
68 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
69 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
70 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
76 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
77 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
78 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
81 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
82 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
83 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
84 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
85 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
86 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
87 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
88 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
89 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
90 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
91 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
92 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
93 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
94 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
101 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.52
Nodule 0
Rhizoplane 1.03
Rhizosphere 97.42
Stem 0
Stem Tuber 0
Unclassified 6.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373954_0049106 3300035118 Bacteria 1978
2 rootH2_10104279 3300003320 Bacteria 6023
3 rootH1_10036029 3300003323 Bacteria 8561
4 Ga0070690_100000664 3300005330 Bacteria 17506
5 Ga0070689_100013572 3300005340 Bacteria 5899
6 Ga0070689_100205970 3300005340 Bacteria 1608
7 Ga0070691_10027634 3300005341 Unclassified 2648
8 Ga0070714_100001788 3300005435 Bacteria 15659
9 Ga0070711_100011208 3300005439 Bacteria 5560
10 Ga0070681_10087671 3300005458 Bacteria 3065
11 Ga0068867_100097154 3300005459 Unclassified 2244
12 Ga0070685_10055533 3300005466 Bacteria 2301
13 Ga0070679_100237690 3300005530 Bacteria 1780
14 Ga0070679_100310232 3300005530 Bacteria 1527
15 Ga0068855_100030801 3300005563 Bacteria 6414
16 Ga0068855_100127959 3300005563 Bacteria 2903
17 Ga0068855_100143582 3300005563 Unclassified 2718
18 Ga0068856_100000155 3300005614 Bacteria 70571
19 Ga0068856_100026334 3300005614 Bacteria 5671
20 Ga0068856_100142203 3300005614 Bacteria 2407
21 Ga0068859_100075761 3300005617 Bacteria 3405
22 Ga0068859_100185499 3300005617 Bacteria 2164
23 Ga0068863_100245910 3300005841 Bacteria 1727
24 Ga0068863_100331323 3300005841 Bacteria 1480
25 Ga0081455_10041928 3300005937 Bacteria 4020
26 Ga0070712_100107200 3300006175 Bacteria 2078
27 Ga0097620_100075762 3300006931 Bacteria 3405
28 Ga0097620_100185504 3300006931 Bacteria 2164
29 Ga0105240_10001023 3300009093 Bacteria 49771
30 Ga0105240_10284688 3300009093 Unclassified 1897
31 Ga0105241_10156840 3300009174 Bacteria 1867
32 Ga0105242_10338603 3300009176 Unclassified 1386
33 Ga0105237_10380399 3300009545 Bacteria 1416
34 Ga0105238_10001680 3300009551 Bacteria 22244
35 Ga0105238_10027186 3300009551 Bacteria 5829
36 Ga0105238_10156287 3300009551 Bacteria 2256
37 Ga0105238_10192823 3300009551 Bacteria 2013
38 Ga0157378_10136565 3300013297 Bacteria 2274
39 Ga0157375_10000037 3300013308 Bacteria 176523
40 Ga0163163_10000049 3300014325 Bacteria 130036
41 Ga0163163_10003580 3300014325 Bacteria 13192
42 Ga0207680_10083555 3300025903 Bacteria 2013
43 Ga0207707_10074307 3300025912 Bacteria 2965
44 Ga0207695_10008765 3300025913 Bacteria 12613
45 Ga0207663_10006853 3300025916 Bacteria 5865
46 Ga0207694_10014389 3300025924 Bacteria 5963
47 Ga0207664_10005505 3300025929 Bacteria 8661
48 Ga0207670_10034842 3300025936 Bacteria 3259
49 Ga0207667_10027814 3300025949 Bacteria 6149
50 Ga0207667_10045085 3300025949 Bacteria 4670
51 Ga0207667_10107203 3300025949 Unclassified 2882
52 Ga0207703_10096684 3300026035 Bacteria 2494
53 Ga0207702_10007211 3300026078 Bacteria 9512
54 Ga0207648_10082337 3300026089 Unclassified 2807
55 Ga0265337_1000534 3300028556 Bacteria 20228
56 Ga0265337_1000677 3300028556 Bacteria 18019
57 Ga0265337_1001499 3300028556 Bacteria 11457
58 Ga0265337_1004211 3300028556 Bacteria 6029
59 Ga0265337_1013922 3300028556 Bacteria 2681
60 Ga0265319_1000004 3300028563 Bacteria 305085
61 Ga0265319_1003636 3300028563 Bacteria 7971
62 Ga0265319_1012438 3300028563 Bacteria 3441
63 Ga0265319_1026618 3300028563 Bacteria 2058
64 Ga0265334_10050067 3300028573 Bacteria 1606
65 Ga0265323_10003908 3300028653 Bacteria 6480
66 Ga0265323_10008473 3300028653 Bacteria 4239
67 Ga0265323_10026833 3300028653 Bacteria 2169
68 Ga0265336_10000950 3300028666 Bacteria 14550
69 Ga0265336_10010388 3300028666 Bacteria 3188
70 Ga0265336_10021305 3300028666 Bacteria 2073
71 Ga0265336_10035242 3300028666 Bacteria 1544
72 Ga0265338_10000038 3300028800 Bacteria 237195
73 Ga0265338_10000214 3300028800 Bacteria 106870
74 Ga0265338_10000274 3300028800 Bacteria 93897
75 Ga0265338_10000459 3300028800 Bacteria 72730
76 Ga0265338_10000843 3300028800 Bacteria 51673
77 Ga0265338_10001139 3300028800 Bacteria 43978
78 Ga0265338_10002125 3300028800 Bacteria 30449
79 Ga0265338_10002612 3300028800 Bacteria 26603
80 Ga0265338_10002771 3300028800 Bacteria 25646
81 Ga0265338_10004765 3300028800 Bacteria 18132
82 Ga0265338_10007287 3300028800 Bacteria 13802
83 Ga0265338_10010346 3300028800 Bacteria 10955
84 Ga0265338_10018560 3300028800 Bacteria 7441
85 Ga0265338_10026643 3300028800 Bacteria 5822
86 Ga0265338_10029058 3300028800 Bacteria 5494
87 Ga0265338_10034749 3300028800 Bacteria 4863
88 Ga0265338_10041794 3300028800 Bacteria 4282
89 Ga0265338_10111659 3300028800 Bacteria 2200
90 Ga0265324_10000911 3300029957 Bacteria 18695
91 Ga0265324_10002847 3300029957 Bacteria 8525
92 Ga0265324_10004040 3300029957 Bacteria 6746
93 Ga0265324_10008904 3300029957 Bacteria 3953
94 Ga0265324_10044742 3300029957 Bacteria 1525
95 Ga0265324_10051931 3300029957 Bacteria 1408
96 Ga0265320_10001005 3300031240 Bacteria 20964
97 Ga0265320_10012886 3300031240 Bacteria 4836
98 Ga0265320_10020305 3300031240 Bacteria 3604
99 Ga0265320_10022973 3300031240 Bacteria 3328
100 Ga0265320_10028450 3300031240 Bacteria 2902
101 Ga0265320_10029364 3300031240 Bacteria 2844
102 Ga0265340_10000438 3300031247 Bacteria 22415
103 Ga0265340_10035942 3300031247 Bacteria 2458
104 Ga0265339_10003157 3300031249 Bacteria 11596
105 Ga0265339_10053870 3300031249 Bacteria 2187
106 Ga0265327_10001087 3300031251 Bacteria 37858
107 Ga0265327_10005793 3300031251 Bacteria 10160
108 Ga0265316_10008385 3300031344 Bacteria 9599
109 Ga0265316_10022149 3300031344 Bacteria 5366
110 Ga0265316_10107895 3300031344 Bacteria 2111
111 Ga0265316_10152166 3300031344 Bacteria 1733
112 Ga0265313_10002951 3300031595 Bacteria 14195
113 Ga0265313_10007405 3300031595 Bacteria 7517
114 Ga0265314_10050235 3300031711 Bacteria 2914
115 Ga0265314_10102712 3300031711 Bacteria 1834
116 Ga0265314_10125934 3300031711 Bacteria 1605
117 Ga0373930_0001479 3300034816 Bacteria 3507
118 Ga0373928_0000042 3300035084 Bacteria 21413
119 Ga0373929_0000940 3300035085 Bacteria 5671
120 Ga0373944_0000093 3300035089 Bacteria 15813
121 Ga0373949_0000647 3300035090 Bacteria 11379
122 Ga0373951_0008429 3300035091 Bacteria 2329
123 Ga0373932_0000008 3300035112 Bacteria 167879
124 Ga0373939_0007506 3300035114 Bacteria 2649
125 Ga0373945_0002680 3300035116 Bacteria 5585
126 Ga0373954_0003950 3300035118 Bacteria 6343
127 Ga0373956_0034094 3300035119 Bacteria 2241
128 Ga0373946_0012854 3300035171 Bacteria 3140
129 Ga0373962_0000072 3300035242 Bacteria 22148
130 Ga0373931_0000011 3300035691 Bacteria 304643
131 Ga0373935_0017545 3300035692 Bacteria 4345
132 Ga0373927_0093930 3300035695 Bacteria 1949
133 Ga0373933_0011528 3300035724 Bacteria 4877
134 Ga0373947_0000504 3300035725 Bacteria 22667
135 Ga0373947_0018921 3300035725 Bacteria 3968
136 Ga0373937_0001257 3300036401 Bacteria 21283
137 Ga0373925_0000521 3300037068 Bacteria 38336
138 Ga0373925_0001163 3300037068 Bacteria 23336
139 Ga0373925_0008982 3300037068 Bacteria 7281
140 Ga0373925_0091753 3300037068 Bacteria 2323
141 Ga0451577_0000744 3300042876 Bacteria 50061
142 Ga0451577_0008871 3300042876 Bacteria 9733
143 Ga0451577_0254944 3300042876 Bacteria 1588
144 Ga0453684_0002349 3300044712 Bacteria 46281
145 Ga0453684_0011601 3300044712 Bacteria 14727
146 Ga0453684_0074338 3300044712 Bacteria 4280
147 Ga0451576_0075654 3300045051 Bacteria 3504
148 Ga0451576_0154560 3300045051 Bacteria 2393
149 Ga0451576_0491162 3300045051 Bacteria 1290
150 Ga0495629_0061179 3300046459 Bacteria 2631
151 Ga0495639_0139399 3300046475 Bacteria 1165
152 Ga0495618_0001755 3300046514 Bacteria 14398
153 Ga0495618_0002290 3300046514 Bacteria 12403
154 Ga0495628_0000898 3300046516 Bacteria 27355
155 Ga0495628_0062152 3300046516 Bacteria 2928
156 Ga0495628_0212887 3300046516 Bacteria 1453
157 Ga0495628_0276552 3300046516 Bacteria 1248
158 Ga0495630_0000023 3300046517 Bacteria 172207
159 Ga0495630_0023650 3300046517 Bacteria 4543
160 Ga0495630_0092175 3300046517 Bacteria 2290
161 Ga0495630_0202218 3300046517 Bacteria 1516
162 Ga0495666_0049762 3300046526 Bacteria 2016
163 Ga0495652_0026736 3300046529 Bacteria 5094
164 Ga0495652_0053918 3300046529 Bacteria 3426
165 Ga0495640_0183069 3300046533 Bacteria 1334
166 Ga0495586_0000004 3300046535 Bacteria 180620
167 Ga0495586_0000886 3300046535 Bacteria 17153
168 Ga0495645_0004498 3300046543 Bacteria 9510
169 Ga0495645_0020842 3300046543 Bacteria 4736
170 Ga0495634_0006336 3300046642 Bacteria 9004
171 Ga0495634_0028864 3300046642 Bacteria 3846
172 Ga0495634_0213891 3300046642 Bacteria 1192
173 Ga0495599_0088141 3300046678 Bacteria 1937
174 Ga0495658_0011791 3300046683 Unclassified 4407
175 Ga0495658_0015523 3300046683 Unclassified 3908
176 Ga0495613_0072078 3300046689 Unclassified 2518
177 Ga0495674_0000508 3300047319 Bacteria 35681
178 Ga0495674_0004505 3300047319 Bacteria 13395
179 Ga0495676_0022401 3300047321 Bacteria 5495
180 Ga0495684_0311016 3300047471 Bacteria 1129
181 Ga0496112_0217148 3300048915 Bacteria 1869
182 Ga0496115_0045740 3300048918 Bacteria 3495
183 Ga0501032_0004783 3300049569 Bacteria 10152
184 Ga0501033_0020772 3300049570 Bacteria 4961
185 Ga0501034_0207539 3300049571 Unclassified 1915
186 Ga0501039_0210559 3300049575 Bacteria 1529
187 Ga0501046_0183312 3300049580 Unclassified 1564
188 Ga0501047_0244221 3300049581 Bacteria 1645
189 Ga0501080_0019750 3300049742 Bacteria 6239
190 Ga0501035_0038532 3300049822 Bacteria 4327
191 Ga0501035_0077079 3300049822 Bacteria 2946
192 Ga0501044_0000275 3300049823 Bacteria 65642
193 Ga0501044_0059580 3300049823 Bacteria 3911
194 Ga0500650_0019107 3300053098 Bacteria 2984
195 Ga0373954_0049106
196 rootH2_10104279
197 rootH1_10036029
198 Ga0070690_100000664
199 Ga0070689_100013572
200 Ga0070689_100205970
201 Ga0070691_10027634
202 Ga0070714_100001788
203 Ga0070711_100011208
204 Ga0070681_10087671
205 Ga0068867_100097154
206 Ga0070685_10055533
207 Ga0070679_100237690
208 Ga0070679_100310232
209 Ga0068855_100030801
210 Ga0068855_100127959
211 Ga0068855_100143582
212 Ga0068856_100000155
213 Ga0068856_100026334
214 Ga0068856_100142203
215 Ga0068859_100075761
216 Ga0068859_100185499
217 Ga0068863_100245910
218 Ga0068863_100331323
219 Ga0081455_10041928
220 Ga0070712_100107200
221 Ga0097620_100075762
222 Ga0097620_100185504
223 Ga0105240_10001023
224 Ga0105240_10284688
225 Ga0105241_10156840
226 Ga0105242_10338603
227 Ga0105237_10380399
228 Ga0105238_10001680
229 Ga0105238_10027186
230 Ga0105238_10156287
231 Ga0105238_10192823
232 Ga0157378_10136565
233 Ga0157375_10000037
234 Ga0163163_10000049
235 Ga0163163_10003580
236 Ga0207680_10083555
237 Ga0207707_10074307
238 Ga0207695_10008765
239 Ga0207663_10006853
240 Ga0207694_10014389
241 Ga0207664_10005505
242 Ga0207670_10034842
243 Ga0207667_10027814
244 Ga0207667_10045085
245 Ga0207667_10107203
246 Ga0207703_10096684
247 Ga0207702_10007211
248 Ga0207648_10082337
249 Ga0265337_1000534
250 Ga0265337_1000677
251 Ga0265337_1001499
252 Ga0265337_1004211
253 Ga0265337_1013922
254 Ga0265319_1000004
255 Ga0265319_1003636
256 Ga0265319_1012438
257 Ga0265319_1026618
258 Ga0265334_10050067
259 Ga0265323_10003908
260 Ga0265323_10008473
261 Ga0265323_10026833
262 Ga0265336_10000950
263 Ga0265336_10010388
264 Ga0265336_10021305
265 Ga0265336_10035242
266 Ga0265338_10000038
267 Ga0265338_10000214
268 Ga0265338_10000274
269 Ga0265338_10000459
270 Ga0265338_10000843
271 Ga0265338_10001139
272 Ga0265338_10002125
273 Ga0265338_10002612
274 Ga0265338_10002771
275 Ga0265338_10004765
276 Ga0265338_10007287
277 Ga0265338_10010346
278 Ga0265338_10018560
279 Ga0265338_10026643
280 Ga0265338_10029058
281 Ga0265338_10034749
282 Ga0265338_10041794
283 Ga0265338_10111659
284 Ga0265324_10000911
285 Ga0265324_10002847
286 Ga0265324_10004040
287 Ga0265324_10008904
288 Ga0265324_10044742
289 Ga0265324_10051931
290 Ga0265320_10001005
291 Ga0265320_10012886
292 Ga0265320_10020305
293 Ga0265320_10022973
294 Ga0265320_10028450
295 Ga0265320_10029364
296 Ga0265340_10000438
297 Ga0265340_10035942
298 Ga0265339_10003157
299 Ga0265339_10053870
300 Ga0265327_10001087
301 Ga0265327_10005793
302 Ga0265316_10008385
303 Ga0265316_10022149
304 Ga0265316_10107895
305 Ga0265316_10152166
306 Ga0265313_10002951
307 Ga0265313_10007405
308 Ga0265314_10050235
309 Ga0265314_10102712
310 Ga0265314_10125934
311 Ga0373930_0001479
312 Ga0373928_0000042
313 Ga0373929_0000940
314 Ga0373944_0000093
315 Ga0373949_0000647
316 Ga0373951_0008429
317 Ga0373932_0000008
318 Ga0373939_0007506
319 Ga0373945_0002680
320 Ga0373954_0003950
321 Ga0373956_0034094
322 Ga0373946_0012854
323 Ga0373962_0000072
324 Ga0373931_0000011
325 Ga0373935_0017545
326 Ga0373927_0093930
327 Ga0373933_0011528
328 Ga0373947_0000504
329 Ga0373947_0018921
330 Ga0373937_0001257
331 Ga0373925_0000521
332 Ga0373925_0001163
333 Ga0373925_0008982
334 Ga0373925_0091753
335 Ga0451577_0000744
336 Ga0451577_0008871
337 Ga0451577_0254944
338 Ga0453684_0002349
339 Ga0453684_0011601
340 Ga0453684_0074338
341 Ga0451576_0075654
342 Ga0451576_0154560
343 Ga0451576_0491162
344 Ga0495629_0061179
345 Ga0495639_0139399
346 Ga0495618_0001755
347 Ga0495618_0002290
348 Ga0495628_0000898
349 Ga0495628_0062152
350 Ga0495628_0212887
351 Ga0495628_0276552
352 Ga0495630_0000023
353 Ga0495630_0023650
354 Ga0495630_0092175
355 Ga0495630_0202218
356 Ga0495666_0049762
357 Ga0495652_0026736
358 Ga0495652_0053918
359 Ga0495640_0183069
360 Ga0495586_0000004
361 Ga0495586_0000886
362 Ga0495645_0004498
363 Ga0495645_0020842
364 Ga0495634_0006336
365 Ga0495634_0028864
366 Ga0495634_0213891
367 Ga0495599_0088141
368 Ga0495658_0011791
369 Ga0495658_0015523
370 Ga0495613_0072078
371 Ga0495674_0000508
372 Ga0495674_0004505
373 Ga0495676_0022401
374 Ga0495684_0311016
375 Ga0496112_0217148
376 Ga0496115_0045740
377 Ga0501032_0004783
378 Ga0501033_0020772
379 Ga0501034_0207539
380 Ga0501039_0210559
381 Ga0501046_0183312
382 Ga0501047_0244221
383 Ga0501080_0019750
384 Ga0501035_0038532
385 Ga0501035_0077079
386 Ga0501044_0000275
387 Ga0501044_0059580
388 Ga0500650_0019107

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

32

144

0.97

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

282

392

0.93

PF00512

HisKA

His Kinase A (phospho-acceptor) domain

164

232

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1nxp-assembly1.cif.gz_A micarec ph4.5 0.9674 3 122
1nxo-assembly1.cif.gz_A-2 micarec ph7.0 0.9614 3 123
4h60-assembly1.cif.gz_A high resolution structure of vibrio cholerae chemotaxis protein chey4 crystallized in low ph (4.0) condition 0.9593 1 118
1mb0-assembly1.cif.gz_A crystal structure of the response regulator divk at ph 8.0 in complex with mn2+ 0.9591 1 120
4kfc-assembly1.cif.gz_A crystal structure of a hyperactive mutant of response regulator kdpe complexed to its promoter dna 0.959 1 122
ID Description Score Start End Superfamily
af_P21866_1_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9646 1 84 3.40.50.2300
1nxoA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9614 3 123 3.40.50.2300
af_O14283_368_529_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9586 3 122 3.40.50.2300
af_P21866_1_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9529 1 84 3.40.50.2300
af_Q5A4X5_425_557_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9512 4 118 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A2W4REI8-F1-model_v4 Response regulator 0.9855 1 118 GO:0000160
AF-A0A6G7BSK9-F1-model_v4 Response regulator 0.9819 1 122 GO:0000160
GO:0003677
GO:0003700
GO:0005829
AF-A0A1M5AB37-F1-model_v4 Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP 0.9767 2 128 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A7J9WBJ8-F1-model_v4 Response regulator 0.9726 2 121 GO:0000160
GO:0003677
AF-A0A0B0H5R4-F1-model_v4 Response regulator 0.9681 2 118 GO:0000160

Map