F298152

General Info

Members Datasets Scaffolds Average Seq Length
194 128 388 837

Family's Representative Sequence

Representative Sequence 3300005334|Ga0068869_100002816|Ga0068869_1000028162
Length 936
Sequence LFPSLYRLEQDGKLKAEWRATENTRRAQYYRLTASERRQLEPHREHWARSPSQVFWRAHDTLASLGAIVRWIARRDRAEQDLNDERRVFIDMADDDEVRDGAIAAEARRRAVLQPGGLEQAKGRVRLGRHGAWLDVAVRDIRYGLRQLRRDPAFSAVAIATLALSIGGITAIFSAFDTILLRPLPYADADRLVMVWDDMSKSEGDATFFSTPAEWTEWRRLNTVFTDLACSQPGDAILSGDGEPEEVRARKVTWNLWSVLRVQPALGRVFTEDEDGKGARVVVMSHGLWQRRFGGASDIVGRKISVNDEAYEVVGVMPRSFYFLPSRDVDLWMPASFPPGLQANFTWHSAQIVARLKPGVTLEHARQSMAALSLQVTAKDFRGPHSVTMIPLRKEMAGKTRTAMIVLLWASAALLLIACVNLANLLLSRGEVRGREVALRLALGAGRGRLIAQFLTESLVLAGLGAVAGLALAGPAMRLLERLVPDAMGAARLTLDWRVLAFAAIASVAAALAFGLAPALRSSRLGPKEGLRDGGRGTVGARSHWFQHSLIVVETALAVALLTCGGLLLQTFQHLRNTDLGIRTERLLTFETPLLRYRDFDRRVAFVNTELEKVRAIPGVTNAAAISQIPLTITDNFRFYLLAGQSRDSFAQQIALTRVVTHGYFTTVGAQLREGRGFEASDRKSESPAVVVNESFANRNYRGRSPLGERLKFERLNEKGYWYTIVGVVKEIRERGVAEESRPAIYRVHEQADQTNDVPSGIVVRTAVEPGSIVSAVRQAIWSVDNNQPLARIRAMEDIVDRQLSTAKQSTALLGAFAMLALLLASIGIYGVLSYAVRQRTNEIGVRMVLGATSGEILRSFGRRGLGLTLCGLAIGHVLAAIASRLLTTLLYGFRPDYFATVAAVSLILLAVATLACFVPARRASLVDPMIALRQE

Samples

Sample ID Description Type Environment
1 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
33 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
34 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
35 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
59 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
60 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
61 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
90 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
91 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
94 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
95 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
96 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
97 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
98 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
99 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
100 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
101 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
102 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
103 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
104 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
105 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
106 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
107 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
108 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
109 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
110 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
111 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
112 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
113 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
118 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
119 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
122 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
123 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
124 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
125 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
126 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
127 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
128 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.97
Metatranscriptomes 1.03
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.06
Nodule 0
Rhizoplane 3.09
Rhizosphere 93.3
Stem 0
Stem Tuber 0
Unclassified 5.67

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_100002816 3300005334 Bacteria 10543
2 Ga0065712_10068277 3300005290 Bacteria 12224
3 Ga0065712_10071111 3300005290 Bacteria 5478
4 Ga0065715_10004817 3300005293 Bacteria 4688
5 Ga0070676_10000542 3300005328 Bacteria 18275
6 Ga0070690_100005458 3300005330 Bacteria 7144
7 Ga0070690_100011572 3300005330 Bacteria 5164
8 Ga0070670_100049182 3300005331 Bacteria 3626
9 Ga0068868_100051942 3300005338 Unclassified 3226
10 Ga0070689_100004077 3300005340 Bacteria 9837
11 Ga0070675_100000475 3300005354 Bacteria 27444
12 Ga0070675_100055531 3300005354 Bacteria 3260
13 Ga0070674_100048203 3300005356 Bacteria 2923
14 Ga0070688_100005205 3300005365 Bacteria 6829
15 Ga0070688_100015804 3300005365 Bacteria 4301
16 Ga0070688_100019605 3300005365 Bacteria 3920
17 Ga0070667_100000437 3300005367 Bacteria 43868
18 Ga0070667_100017198 3300005367 Bacteria 5989
19 Ga0070711_100000010 3300005439 Bacteria 164614
20 Ga0070711_100009911 3300005439 Bacteria 5874
21 Ga0070700_100010259 3300005441 Bacteria 5169
22 Ga0070678_100005345 3300005456 Bacteria 7410
23 Ga0070685_10000648 3300005466 Bacteria 19002
24 Ga0070679_100065822 3300005530 Bacteria 3612
25 Ga0070684_100001009 3300005535 Bacteria 20079
26 Ga0070672_100007291 3300005543 Bacteria 7494
27 Ga0070672_100008904 3300005543 Bacteria 6895
28 Ga0070672_100024659 3300005543 Bacteria 4449
29 Ga0070686_100000267 3300005544 Bacteria 35636
30 Ga0070665_100027061 3300005548 Bacteria 5775
31 Ga0070665_100034519 3300005548 Bacteria 5087
32 Ga0068855_100087036 3300005563 Bacteria 3612
33 Ga0070664_100001182 3300005564 Bacteria 20767
34 Ga0068854_100002325 3300005578 Bacteria 11716
35 Ga0068856_100009114 3300005614 Bacteria 9647
36 Ga0070702_100000352 3300005615 Bacteria 16091
37 Ga0068859_100004090 3300005617 Bacteria 14880
38 Ga0068859_100050720 3300005617 Bacteria 4169
39 Ga0068864_100003302 3300005618 Bacteria 13329
40 Ga0068870_10001624 3300005840 Bacteria 9169
41 Ga0068863_100000533 3300005841 Bacteria 38898
42 Ga0068863_100033667 3300005841 Bacteria 4881
43 Ga0068858_100046736 3300005842 Bacteria 4012
44 Ga0081455_10036309 3300005937 Bacteria 4390
45 Ga0081539_10007619 3300005985 Bacteria 9775
46 Ga0070712_100037296 3300006175 Bacteria 3312
47 Ga0075367_10003105 3300006178 Bacteria 7809
48 Ga0075428_100001388 3300006844 Bacteria 25795
49 Ga0075428_100011201 3300006844 Bacteria 9978
50 Ga0075430_100026687 3300006846 Bacteria 4913
51 Ga0075431_100011109 3300006847 Bacteria 9063
52 Ga0075431_100064022 3300006847 Bacteria 3796
53 Ga0075433_10007239 3300006852 Bacteria 8789
54 Ga0075433_10057425 3300006852 Bacteria 3401
55 Ga0075434_100010852 3300006871 Bacteria 8562
56 Ga0075434_100065084 3300006871 Bacteria 3631
57 Ga0075434_100073706 3300006871 Bacteria 3407
58 Ga0075429_100016118 3300006880 Bacteria 6474
59 Ga0075429_100062866 3300006880 Bacteria 3235
60 Ga0075429_100079711 3300006880 Bacteria 2854
61 Ga0097620_100004090 3300006931 Bacteria 14880
62 Ga0097620_100050720 3300006931 Bacteria 4169
63 Ga0097620_100119759 3300006931 Bacteria 2699
64 Ga0075435_100068578 3300007076 Bacteria 2890
65 Ga0105240_10055131 3300009093 Bacteria 4978
66 Ga0105240_10127029 3300009093 Bacteria 3063
67 Ga0111539_10004650 3300009094 Bacteria 17935
68 Ga0111539_10023995 3300009094 Bacteria 7492
69 Ga0111539_10025000 3300009094 Bacteria 7319
70 Ga0111539_10096900 3300009094 Bacteria 3465
71 Ga0111539_10165206 3300009094 Bacteria 2588
72 Ga0114129_10017848 3300009147 Bacteria 10104
73 Ga0114129_10093617 3300009147 Unclassified 4162
74 Ga0114129_10106261 3300009147 Bacteria 3878
75 Ga0114129_10128995 3300009147 Bacteria 3475
76 Ga0114129_10142459 3300009147 Bacteria 3285
77 Ga0105241_10001348 3300009174 Bacteria 18663
78 Ga0105242_10066305 3300009176 Bacteria 2981
79 Ga0105248_10011244 3300009177 Bacteria 9871
80 Ga0105248_10108621 3300009177 Bacteria 3128
81 Ga0105249_10012868 3300009553 Bacteria 7383
82 Ga0105249_10088329 3300009553 Unclassified 2895
83 Ga0157369_10024157 3300013105 Bacteria 6765
84 Ga0157369_10063793 3300013105 Unclassified 3969
85 Ga0157369_10086254 3300013105 Unclassified 3353
86 Ga0157378_10005859 3300013297 Bacteria 10764
87 Ga0157378_10030859 3300013297 Bacteria 4732
88 Ga0163162_10035893 3300013306 Bacteria 4939
89 Ga0157372_10047309 3300013307 Unclassified 4779
90 Ga0157375_10000560 3300013308 Bacteria 33418
91 Ga0157375_10024934 3300013308 Bacteria 5545
92 Ga0163163_10004559 3300014325 Bacteria 11835
93 Ga0163163_10014175 3300014325 Bacteria 7321
94 Ga0157380_10009339 3300014326 Bacteria 7023
95 Ga0157380_10054386 3300014326 Bacteria 3176
96 Ga0157379_10065614 3300014968 Bacteria 3245
97 Ga0157376_10052985 3300014969 Unclassified 3376
98 Ga0163161_10056997 3300017792 Bacteria 2839
99 Ga0207682_10001991 3300025893 Bacteria 9246
100 Ga0207682_10003416 3300025893 Bacteria 6909
101 Ga0207647_10004808 3300025904 Bacteria 9997
102 Ga0207645_10001780 3300025907 Bacteria 17427
103 Ga0207645_10009639 3300025907 Bacteria 6670
104 Ga0207643_10001749 3300025908 Bacteria 12141
105 Ga0207654_10000154 3300025911 Bacteria 43613
106 Ga0207695_10041096 3300025913 Bacteria 4951
107 Ga0207693_10012110 3300025915 Bacteria 6971
108 Ga0207663_10000005 3300025916 Bacteria 282473
109 Ga0207663_10000199 3300025916 Bacteria 26721
110 Ga0207650_10058929 3300025925 Bacteria 2860
111 Ga0207659_10001274 3300025926 Bacteria 15097
112 Ga0207659_10007483 3300025926 Bacteria 6718
113 Ga0207664_10055857 3300025929 Unclassified 3134
114 Ga0207706_10012668 3300025933 Bacteria 7675
115 Ga0207706_10019550 3300025933 Bacteria 6093
116 Ga0207706_10061384 3300025933 Bacteria 3310
117 Ga0207709_10029942 3300025935 Bacteria 3163
118 Ga0207669_10022575 3300025937 Bacteria 3345
119 Ga0207691_10000126 3300025940 Bacteria 69642
120 Ga0207691_10007998 3300025940 Bacteria 10168
121 Ga0207691_10012941 3300025940 Bacteria 7991
122 Ga0207689_10001982 3300025942 Bacteria 19335
123 Ga0207667_10130637 3300025949 Unclassified 2587
124 Ga0207651_10005667 3300025960 Bacteria 6441
125 Ga0207712_10010415 3300025961 Bacteria 5903
126 Ga0207658_10003147 3300025986 Bacteria 11798
127 Ga0207677_10010524 3300026023 Bacteria 5238
128 Ga0207708_10036060 3300026075 Bacteria 3763
129 Ga0207702_10068068 3300026078 Bacteria 3058
130 Ga0207641_10000939 3300026088 Bacteria 30094
131 Ga0207641_10073039 3300026088 Bacteria 2955
132 Ga0207648_10008092 3300026089 Bacteria 10238
133 Ga0207648_10027443 3300026089 Bacteria 5054
134 Ga0207648_10089651 3300026089 Bacteria 2687
135 Ga0207676_10003735 3300026095 Bacteria 10769
136 Ga0207675_100004787 3300026118 Bacteria 13037
137 Ga0207675_100012972 3300026118 Bacteria 7782
138 Ga0207675_100112562 3300026118 Bacteria 2569
139 Ga0207683_10014489 3300026121 Bacteria 6713
140 Ga0207428_10016389 3300027907 Bacteria 6375
141 Ga0207428_10029298 3300027907 Bacteria 4564
142 Ga0265354_1000614 3300028016 Bacteria 6016
143 Ga0268266_10012090 3300028379 Bacteria 7470
144 Ga0268266_10025932 3300028379 Bacteria 4987
145 Ga0268265_10017702 3300028380 Bacteria 4924
146 Ga0265338_10005264 3300028800 Bacteria 16950
147 Ga0265324_10011047 3300029957 Unclassified 3456
148 Ga0265770_1001021 3300030878 Bacteria 3872
149 Ga0265760_10001462 3300031090 Bacteria 6952
150 Ga0265320_10001740 3300031240 Bacteria 15450
151 Ga0265340_10009199 3300031247 Bacteria 5310
152 Ga0265339_10002294 3300031249 Bacteria 13807
153 Ga0265316_10004797 3300031344 Bacteria 13337
154 Ga0265314_10004758 3300031711 Bacteria 12439
155 Ga0307413_10015122 3300031824 Bacteria 3946
156 Ga0307409_100038489 3300031995 Bacteria 3538
157 Ga0307414_10048498 3300032004 Bacteria 2930
158 Ga0436364_1432423 3300037853 Bacteria 3149
159 Ga0436363_0237146 3300039450 Bacteria 5789
160 Ga0451576_0023559 3300045051 Bacteria 6664
161 Ga0495580_0023678 3300046472 Unclassified 4504
162 Ga0495639_0023318 3300046475 Bacteria 2719
163 Ga0496109_0000049 3300048912 Bacteria 127530
164 Ga0496109_0002287 3300048912 Bacteria 15931
165 Ga0496110_0014939 3300048913 Bacteria 6454
166 Ga0496110_0021291 3300048913 Bacteria 5487
167 Ga0496111_0001518 3300048914 Bacteria 13312
168 Ga0496112_0011159 3300048915 Bacteria 8192
169 Ga0496126_0001808 3300048929 Bacteria 31310
170 Ga0501036_0094557 3300049572 Bacteria 2526
171 Ga0501040_0045907 3300049576 Bacteria 2982
172 Ga0501048_0013992 3300049582 Bacteria 5948
173 nmdc:mga03683_3570_c1 3300050489 Bacteria 3401
174 nmdc:mga06z11_15982_c1 3300050494 Bacteria 3367
175 nmdc:mga05p37_22211_c1 3300050507 Bacteria 7692
176 nmdc:mga05p37_41907_c1 3300050507 Bacteria 5623
177 nmdc:mga09592_14853_c1 3300050508 Bacteria 6359
178 nmdc:mga09592_62273_c1 3300050508 Bacteria 3156
179 nmdc:mga09592_76516_c1 3300050508 Bacteria 2846
180 nmdc:mga06r32_10263_c1 3300050510 Bacteria 8450
181 nmdc:mga06r32_14370_c1 3300050510 Bacteria 7185
182 nmdc:mga06r32_3191_c1 3300050510 Bacteria 14682
183 nmdc:mga06r32_63607_c1 3300050510 Bacteria 3557
184 nmdc:mga08y16_116861_c1 3300050511 Bacteria 2777
185 nmdc:mga08y16_21217_c1 3300050511 Bacteria 6860
186 nmdc:mga08y16_23719_c1 3300050511 Bacteria 6478
187 nmdc:mga08y16_71922_c1 3300050511 Bacteria 3604
188 nmdc:mga0n895_62928_c1 3300050512 Bacteria 3669
189 nmdc:mga0a205_43741_c1 3300050515 Bacteria 4317
190 nmdc:mga0a205_90571_c1 3300050515 Bacteria 2956
191 nmdc:mga0a205_9584_c1 3300050515 Bacteria 8863
192 Ga0500568_0002362 3300053139 Bacteria 11170
193 Ga0501084_0014430 3300054114 Bacteria 6547
194 Ga0501082_0000433 3300060353 Bacteria 37136
195 Ga0068869_100002816
196 Ga0065712_10068277
197 Ga0065712_10071111
198 Ga0065715_10004817
199 Ga0070676_10000542
200 Ga0070690_100005458
201 Ga0070690_100011572
202 Ga0070670_100049182
203 Ga0068868_100051942
204 Ga0070689_100004077
205 Ga0070675_100000475
206 Ga0070675_100055531
207 Ga0070674_100048203
208 Ga0070688_100005205
209 Ga0070688_100015804
210 Ga0070688_100019605
211 Ga0070667_100000437
212 Ga0070667_100017198
213 Ga0070711_100000010
214 Ga0070711_100009911
215 Ga0070700_100010259
216 Ga0070678_100005345
217 Ga0070685_10000648
218 Ga0070679_100065822
219 Ga0070684_100001009
220 Ga0070672_100007291
221 Ga0070672_100008904
222 Ga0070672_100024659
223 Ga0070686_100000267
224 Ga0070665_100027061
225 Ga0070665_100034519
226 Ga0068855_100087036
227 Ga0070664_100001182
228 Ga0068854_100002325
229 Ga0068856_100009114
230 Ga0070702_100000352
231 Ga0068859_100004090
232 Ga0068859_100050720
233 Ga0068864_100003302
234 Ga0068870_10001624
235 Ga0068863_100000533
236 Ga0068863_100033667
237 Ga0068858_100046736
238 Ga0081455_10036309
239 Ga0081539_10007619
240 Ga0070712_100037296
241 Ga0075367_10003105
242 Ga0075428_100001388
243 Ga0075428_100011201
244 Ga0075430_100026687
245 Ga0075431_100011109
246 Ga0075431_100064022
247 Ga0075433_10007239
248 Ga0075433_10057425
249 Ga0075434_100010852
250 Ga0075434_100065084
251 Ga0075434_100073706
252 Ga0075429_100016118
253 Ga0075429_100062866
254 Ga0075429_100079711
255 Ga0097620_100004090
256 Ga0097620_100050720
257 Ga0097620_100119759
258 Ga0075435_100068578
259 Ga0105240_10055131
260 Ga0105240_10127029
261 Ga0111539_10004650
262 Ga0111539_10023995
263 Ga0111539_10025000
264 Ga0111539_10096900
265 Ga0111539_10165206
266 Ga0114129_10017848
267 Ga0114129_10093617
268 Ga0114129_10106261
269 Ga0114129_10128995
270 Ga0114129_10142459
271 Ga0105241_10001348
272 Ga0105242_10066305
273 Ga0105248_10011244
274 Ga0105248_10108621
275 Ga0105249_10012868
276 Ga0105249_10088329
277 Ga0157369_10024157
278 Ga0157369_10063793
279 Ga0157369_10086254
280 Ga0157378_10005859
281 Ga0157378_10030859
282 Ga0163162_10035893
283 Ga0157372_10047309
284 Ga0157375_10000560
285 Ga0157375_10024934
286 Ga0163163_10004559
287 Ga0163163_10014175
288 Ga0157380_10009339
289 Ga0157380_10054386
290 Ga0157379_10065614
291 Ga0157376_10052985
292 Ga0163161_10056997
293 Ga0207682_10001991
294 Ga0207682_10003416
295 Ga0207647_10004808
296 Ga0207645_10001780
297 Ga0207645_10009639
298 Ga0207643_10001749
299 Ga0207654_10000154
300 Ga0207695_10041096
301 Ga0207693_10012110
302 Ga0207663_10000005
303 Ga0207663_10000199
304 Ga0207650_10058929
305 Ga0207659_10001274
306 Ga0207659_10007483
307 Ga0207664_10055857
308 Ga0207706_10012668
309 Ga0207706_10019550
310 Ga0207706_10061384
311 Ga0207709_10029942
312 Ga0207669_10022575
313 Ga0207691_10000126
314 Ga0207691_10007998
315 Ga0207691_10012941
316 Ga0207689_10001982
317 Ga0207667_10130637
318 Ga0207651_10005667
319 Ga0207712_10010415
320 Ga0207658_10003147
321 Ga0207677_10010524
322 Ga0207708_10036060
323 Ga0207702_10068068
324 Ga0207641_10000939
325 Ga0207641_10073039
326 Ga0207648_10008092
327 Ga0207648_10027443
328 Ga0207648_10089651
329 Ga0207676_10003735
330 Ga0207675_100004787
331 Ga0207675_100012972
332 Ga0207675_100112562
333 Ga0207683_10014489
334 Ga0207428_10016389
335 Ga0207428_10029298
336 Ga0265354_1000614
337 Ga0268266_10012090
338 Ga0268266_10025932
339 Ga0268265_10017702
340 Ga0265338_10005264
341 Ga0265324_10011047
342 Ga0265770_1001021
343 Ga0265760_10001462
344 Ga0265320_10001740
345 Ga0265340_10009199
346 Ga0265339_10002294
347 Ga0265316_10004797
348 Ga0265314_10004758
349 Ga0307413_10015122
350 Ga0307409_100038489
351 Ga0307414_10048498
352 Ga0436364_1432423
353 Ga0436363_0237146
354 Ga0451576_0023559
355 Ga0495580_0023678
356 Ga0495639_0023318
357 Ga0496109_0000049
358 Ga0496109_0002287
359 Ga0496110_0014939
360 Ga0496110_0021291
361 Ga0496111_0001518
362 Ga0496112_0011159
363 Ga0496126_0001808
364 Ga0501036_0094557
365 Ga0501040_0045907
366 Ga0501048_0013992
367 nmdc:mga03683_3570_c1
368 nmdc:mga06z11_15982_c1
369 nmdc:mga05p37_22211_c1
370 nmdc:mga05p37_41907_c1
371 nmdc:mga09592_14853_c1
372 nmdc:mga09592_62273_c1
373 nmdc:mga09592_76516_c1
374 nmdc:mga06r32_10263_c1
375 nmdc:mga06r32_14370_c1
376 nmdc:mga06r32_3191_c1
377 nmdc:mga06r32_63607_c1
378 nmdc:mga08y16_116861_c1
379 nmdc:mga08y16_21217_c1
380 nmdc:mga08y16_23719_c1
381 nmdc:mga08y16_71922_c1
382 nmdc:mga0n895_62928_c1
383 nmdc:mga0a205_43741_c1
384 nmdc:mga0a205_90571_c1
385 nmdc:mga0a205_9584_c1
386 Ga0500568_0002362
387 Ga0501084_0014430
388 Ga0501082_0000433

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02687

FtsX

FtsX-like permease family

408

527

0.92

PF02687

FtsX

FtsX-like permease family

815

929

0.91

PF12704

MacB_PCD

MacB-like periplasmic core domain

155

372

0.77

PF12704

MacB_PCD

MacB-like periplasmic core domain

551

784

0.64

Structural Annotation

Top 5 Hits

ID Description Score Start End
7w7c-assembly1.cif.gz_B-2 heme exporter in the unliganded form 0.8426 751 872
3is6-assembly1.cif.gz_A the crystal structure of a domain of a putative permease protein from porphyromonas gingivalis to 2a 0.7406 119 324
3ftj-assembly1.cif.gz_A crystal structure of the periplasmic region of macb from actinobacillus actinomycetemcomitans 0.7077 518 740
5f9q-assembly1.cif.gz_A crystal structure of the extracellular domain of noncanonic abc-type transporter yknz from gram-positive bacteria 0.7006 525 731
5f9q-assembly1.cif.gz_A crystal structure of the extracellular domain of noncanonic abc-type transporter yknz from gram-positive bacteria 0.6941 525 731
ID Description Score Start End Superfamily
af_Q19360_339_430_3.10.290.20 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;Ubiquitin-like 2 activating enzyme e1b. Chain: 0.6362 643 666 3.10.290.20
af_P24181_41_133_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.5571 261 324 3.30.70.1430
af_P24181_41_133_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.3472 261 324 3.30.70.1430
af_A0A0R0GET6_7_150_1.20.140.40 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Invertase/pectin methylesterase inhibitor family protein 0.2682 346 451 1.20.140.40
af_Q9N519_8_301_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.2597 297 469 1.20.1070.10
ID Description Score Start End GO Terms
AF-A0A2V9QVF9-F1-model_v4 ABC transporter permease 0.9585 73 875 GO:0005886
GO:0022857
AF-A0A2W5YUP8-F1-model_v4 ABC transporter permease 0.9546 75 752 GO:0005886
GO:0022857
AF-A0A2V9QVF9-F1-model_v4 ABC transporter permease 0.9539 73 875 GO:0005886
GO:0022857
AF-A0A2V8M2S7-F1-model_v4 ABC transporter permease 0.9535 71 875 GO:0005886
GO:0022857
AF-A0A2T6E1V9-F1-model_v4 ABC transporter permease 0.9522 73 875 GO:0005886
GO:0022857

Map