F297649

General Info

Members Datasets Scaffolds Average Seq Length
193 124 156 247

Family's Representative Sequence

Representative Sequence 3300046660|Ga0495625_0015305|Ga0495625_0015305_2415_3224
Length 269
Sequence LAPPDALPFATVFCGRADKRMNAMNPAISPFKTASVLAVLLSATLLSSFSQAGVMLGGTRIVYDGNKRDASITVSNTTAEPYAVQAWINTEADDNTTATPFVATPPLFRLDPRKEQMVRIQKVPGDLPQDRESVFYFNAQEIPLAGKADANTLKIAMRTRIKVFYRPPTLKGSAIEAPPQLRWSLQQEQGKPVLVVNNPTAFHVSFIGVKVEAGAQVVEVNEPKMVAPMSSQRYALPGFSGRSAAVVFSAINDYGGYSEPKKVELSSAP

Samples

Sample ID Description Type Environment
1 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 2506520007 Serratia plymuthica AS9 Isolate Rhizosphere
3 2506520008 Serratia plymuthica AS12 Isolate Unclassified
4 2508501071 Serratia proteamaculans S4 Isolate Rhizosphere
5 2511231010 Pseudomonas sp. GM25 Isolate Nodule
6 2511231017 Pseudomonas sp. GM55 Isolate Nodule
7 2513237082 Paraburkholderia mimosarum STM3621 Isolate Nodule
8 2513237083 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
9 2547132103 Chromobacterium sp. C-61 Isolate Rhizosphere
10 2554235234 Klebsiella michiganensis SA2 Isolate Unclassified
11 2597489888 Pseudomonas fluorescens SS101 Isolate Rhizosphere
12 2599185155 Pseudomonas sp. NFACC10-1 Isolate Rhizoplane
13 2600255256 Enterobacter sp. NFIX08 Isolate Rhizoplane
14 2600255257 Enterobacter sp. NFIX03 Isolate Rhizoplane
15 2600255310 Enterobacter sp. NFIX06 Isolate Rhizoplane
16 2600255311 Enterobacter sp. NFIX04 Isolate Rhizoplane
17 2602042046 Enterobacter sp. NFIX09 Isolate Rhizoplane
18 2643221713 Pseudomonas sp. Root9 Isolate Unclassified
19 2654587920 Serratia plymuthica HRO-C48 Isolate Rhizosphere
20 2687453601 Serratia plymuthica 3Rp8 Isolate Unclassified
21 2772190666 Serratia surfactantfaciens YD25 Isolate Unclassified
22 2811995292 Kosakonia oryzae Ola 51 Isolate Unclassified
23 2814123068 Kosakonia radicincitans GXGL-4A Isolate Rhizosphere
24 2842849001 Pseudomonas sp. R-72008 Isolate Unclassified
25 2869551831 Serratia inhibens PRI-2C Isolate Rhizosphere
26 2881609920 Pantoea sp. ARC607 Isolate Rhizosphere
27 2884086401 Kluyvera sp. PO2S7 Isolate Rhizosphere
28 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
29 2888373701 Serratia rhizosphaerae KUDC3025 Isolate Rhizosphere
30 2937967321 Serratia sp. YC16 Isolate Unclassified
31 2971820967 Klebsiella sp. MPUS7 Isolate Rhizosphere
32 2978975091 Pantoea anthophila SORGH_AS 797 Isolate Unclassified
33 3000376612 Enterobacteriaceae bacterium 4M9 Isolate Rhizosphere
34 3007855910 Pseudomonas khorasanensis SWRI153 Isolate Rhizosphere
35 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
36 3300005272 Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 v1 Metagenome Rhizosphere
37 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
38 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
39 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
40 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
41 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
42 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
43 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
44 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
47 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
60 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
62 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
63 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
64 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
65 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
66 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
67 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
68 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
69 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
70 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
71 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
72 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
73 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
74 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
75 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
76 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
77 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
78 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
79 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
80 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
81 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
82 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
85 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
86 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
87 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
88 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
89 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
90 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
91 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
92 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
93 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
94 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
95 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
96 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
97 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
98 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
99 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
100 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
101 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
102 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
103 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
104 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
105 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
106 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
107 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
108 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
109 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
110 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
111 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
112 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
113 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
114 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
115 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
116 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
117 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
118 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
119 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
120 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
121 640753048 Serratia proteamaculans 568 Isolate Endosphere
122 8003955200 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
123 8004592986 Serratia sp. S119 Isolate Unclassified
124 8015394850 Serratia sp. PGPR-27 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.83
Metatranscriptomes 0
Isolates 19.17

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.04
Nodule 4.15
Rhizoplane 3.63
Rhizosphere 73.58
Stem 0
Stem Tuber 0
Unclassified 17.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MRS1b_contig_4895430 2162886011 Bacteria 1842
2 Ga0058692_1000193 3300003856 Bacteria 36993
3 Ga0058692_1001731 3300003856 Bacteria 7776
4 Ga0058692_1002195 3300003856 Bacteria 6658
5 Ga0065703_1020680 3300005272 Bacteria 1632
6 Ga0065714_10214845 3300005288 Bacteria 856
7 Ga0065712_10000132 3300005290 Bacteria 73390
8 Ga0075432_10012982 3300006058 Bacteria 2831
9 Ga0079104_1001908 3300006946 Bacteria 12579
10 Ga0079104_1003399 3300006946 Bacteria 7437
11 Ga0105251_10000015 3300009011 Bacteria 149012
12 Ga0105251_10000230 3300009011 Bacteria 56255
13 Ga0105251_10000233 3300009011 Bacteria 55865
14 Ga0105251_10002902 3300009011 Bacteria 12878
15 Ga0105244_10000313 3300009036 Bacteria 47052
16 Ga0105244_10001094 3300009036 Bacteria 22555
17 Ga0105244_10222449 3300009036 Bacteria 885
18 Ga0105250_10001569 3300009092 Bacteria 12276
19 Ga0105250_10035873 3300009092 Bacteria 1990
20 Ga0105247_10000396 3300009101 Bacteria 36915
21 Ga0105243_10005702 3300009148 Bacteria 9681
22 Ga0105241_10000013 3300009174 Bacteria 172249
23 Ga0157373_10038005 3300013100 Bacteria 3450
24 Ga0157371_10000156 3300013102 Bacteria 100191
25 Ga0157369_10002052 3300013105 Bacteria 24298
26 Ga0157375_10000142 3300013308 Bacteria 71529
27 Ga0182008_10000674 3300014497 Bacteria 24693
28 Ga0182008_10024628 3300014497 Bacteria 3062
29 Ga0163161_10000028 3300017792 Bacteria 197151
30 Ga0207696_1000068 3300025711 Bacteria 228017
31 Ga0207696_1013490 3300025711 Bacteria 2846
32 Ga0207655_1000106 3300025728 Bacteria 181416
33 Ga0207655_1001397 3300025728 Bacteria 22555
34 Ga0207655_1119519 3300025728 Bacteria 875
35 Ga0207713_1000003 3300025735 Bacteria 860698
36 Ga0207713_1000044 3300025735 Bacteria 238074
37 Ga0207713_1000062 3300025735 Bacteria 208832
38 Ga0207713_1000850 3300025735 Bacteria 28055
39 Ga0207710_10000145 3300025900 Bacteria 80941
40 Ga0207654_10000016 3300025911 Bacteria 211550
41 Ga0207709_10072211 3300025935 Bacteria 2194
42 Ga0209281_1000107 3300027111 Bacteria 218397
43 Ga0209371_1000161 3300027312 Bacteria 103536
44 Ga0209371_1000704 3300027312 Bacteria 28313
45 Ga0209371_1006533 3300027312 Bacteria 4295
46 Ga0207428_10045262 3300027907 Bacteria 3545
47 Ga0268256_1000012 3300030500 Bacteria 794553
48 Ga0268256_1000603 3300030500 Bacteria 28313
49 Ga0436361_0303310 3300039447 Bacteria 3383
50 Ga0436361_0316011 3300039447 Bacteria 1105
51 Ga0439432_005844 3300042006 Bacteria 4415
52 Ga0439432_008290 3300042006 Bacteria 3652
53 Ga0450902_003965 3300042137 Bacteria 2189
54 Ga0495617_002355 3300046452 Bacteria 7562
55 Ga0495627_000100 3300046453 Bacteria 106276
56 Ga0495627_049035 3300046453 Bacteria 1276
57 Ga0495590_0001325 3300046457 Bacteria 10767
58 Ga0495590_0111506 3300046457 Bacteria 976
59 Ga0495591_000335 3300046458 Bacteria 42058
60 Ga0495591_001839 3300046458 Bacteria 12514
61 Ga0495591_005096 3300046458 Bacteria 6169
62 Ga0495638_0008914 3300046460 Bacteria 7073
63 Ga0495653_0078415 3300046463 Bacteria 2449
64 Ga0495605_0000026 3300046474 Bacteria 221832
65 Ga0495605_0000207 3300046474 Bacteria 72272
66 Ga0495585_0000519 3300046492 Bacteria 36463
67 Ga0495585_0000789 3300046492 Bacteria 27890
68 Ga0495594_0004993 3300046499 Bacteria 6827
69 Ga0495607_0000680 3300046501 Bacteria 32879
70 Ga0495607_0000868 3300046501 Bacteria 28346
71 Ga0495607_0036984 3300046501 Bacteria 2936
72 Ga0495583_0000043 3300046506 Bacteria 230804
73 Ga0495606_0000759 3300046507 Bacteria 49624
74 Ga0495606_0209763 3300046507 Bacteria 1104
75 Ga0495610_0014337 3300046512 Bacteria 4661
76 Ga0495610_0033570 3300046512 Bacteria 2651
77 Ga0495616_0003277 3300046513 Bacteria 10411
78 Ga0495620_0000263 3300046515 Bacteria 38924
79 Ga0495630_0006155 3300046517 Bacteria 8508
80 Ga0495631_0002047 3300046518 Bacteria 11743
81 Ga0495632_0025074 3300046519 Bacteria 3158
82 Ga0495632_0039184 3300046519 Unclassified 2394
83 Ga0495637_0001369 3300046520 Bacteria 14631
84 Ga0495637_0001421 3300046520 Bacteria 14112
85 Ga0495637_0048761 3300046520 Bacteria 1782
86 Ga0495648_0000396 3300046524 Bacteria 47811
87 Ga0495648_0025362 3300046524 Bacteria 4015
88 Ga0495648_0061115 3300046524 Unclassified 2239
89 Ga0495652_0089209 3300046529 Bacteria 2525
90 Ga0495654_0000754 3300046530 Bacteria 25055
91 Ga0495654_0000801 3300046530 Bacteria 24133
92 Ga0495654_0001383 3300046530 Bacteria 16822
93 Ga0495654_0002315 3300046530 Bacteria 12306
94 Ga0495654_0003205 3300046530 Bacteria 10133
95 Ga0495654_0014237 3300046530 Bacteria 4237
96 Ga0495654_0062887 3300046530 Bacteria 1778
97 Ga0495609_0000036 3300046538 Bacteria 186358
98 Ga0495597_0002382 3300046542 Bacteria 11995
99 Ga0495597_0024183 3300046542 Bacteria 2805
100 Ga0495633_0000143 3300046558 Bacteria 95292
101 Ga0495656_0021642 3300046615 Bacteria 2506
102 Ga0495611_0008230 3300046648 Bacteria 4426
103 Ga0495625_0015305 3300046660 Bacteria 6079
104 Ga0495661_0000121 3300046665 Bacteria 93554
105 Ga0495661_0002131 3300046665 Bacteria 15512
106 Ga0495623_0184389 3300046679 Bacteria 1210
107 Ga0495670_0033080 3300046691 Bacteria 2572
108 Ga0495671_0066138 3300046692 Bacteria 1779
109 Ga0495649_0002158 3300046694 Bacteria 14077
110 Ga0495649_0018090 3300046694 Bacteria 3971
111 Ga0495589_0000010 3300046794 Bacteria 250407
112 Ga0495589_0000597 3300046794 Bacteria 24594
113 Ga0495589_0001775 3300046794 Bacteria 12274
114 Ga0495589_0105913 3300046794 Bacteria 1358
115 Ga0495660_0001544 3300046810 Bacteria 15501
116 Ga0495660_0004600 3300046810 Bacteria 8324
117 Ga0495660_0016972 3300046810 Bacteria 4192
118 Ga0495672_0001177 3300047320 Bacteria 26531
119 Ga0495672_0003623 3300047320 Bacteria 13098
120 Ga0495672_0007306 3300047320 Bacteria 8332
121 Ga0495676_0000050 3300047321 Bacteria 97800
122 Ga0495683_0002659 3300047323 Bacteria 10656
123 Ga0495675_0002490 3300047444 Bacteria 11018
124 Ga0495675_0006611 3300047444 Bacteria 7098
125 Ga0495679_000763 3300047446 Bacteria 20506
126 Ga0495673_0000425 3300047469 Bacteria 47809
127 Ga0495673_0009028 3300047469 Bacteria 5542
128 Ga0495681_0007553 3300047470 Bacteria 6923
129 Ga0496103_0030247 3300048906 Bacteria 3295
130 Ga0496116_0000077 3300048919 Bacteria 227959
131 Ga0496117_0000780 3300048920 Bacteria 50006
132 Ga0496117_0025030 3300048920 Bacteria 4702
133 Ga0496117_0078013 3300048920 Bacteria 2188
134 Ga0496118_0000257 3300048921 Bacteria 93972
135 Ga0496118_0002166 3300048921 Bacteria 27343
136 Ga0496118_0273626 3300048921 Bacteria 944
137 Ga0496119_0002259 3300048922 Bacteria 21409
138 Ga0496119_0002844 3300048922 Bacteria 18487
139 Ga0496119_0003544 3300048922 Bacteria 16112
140 Ga0496119_0040160 3300048922 Bacteria 2997
141 Ga0496120_0000112 3300048923 Bacteria 136735
142 Ga0496120_0000139 3300048923 Bacteria 120489
143 Ga0496120_0002081 3300048923 Bacteria 21473
144 Ga0496120_0018745 3300048923 Bacteria 4450
145 Ga0496121_0001628 3300048924 Bacteria 37167
146 Ga0496122_0002538 3300048925 Bacteria 25675
147 Ga0496122_0056812 3300048925 Bacteria 2913
148 Ga0496123_0001938 3300048926 Bacteria 26952
149 Ga0496124_0000100 3300048927 Bacteria 181404
150 Ga0496124_0003689 3300048927 Bacteria 18519
151 Ga0496124_0021847 3300048927 Bacteria 5886
152 Ga0496124_0125936 3300048927 Bacteria 2041
153 Ga0496125_0008947 3300048928 Bacteria 10391
154 Ga0495678_000007 3300049459 Bacteria 448039
155 Ga0495678_004307 3300049459 Bacteria 8292
156 Ga0500572_006212 3300053111 Bacteria 2730

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013105 Ga0157369_10002052 Ga0157369_1000205211 204
2 3300042006 Ga0439432_005844 Ga0439432_005844_1416_2057 204
3 3300048920 Ga0496117_0025030 Ga0496117_0025030_3557_4315 205
4 3300048921 Ga0496118_0002166 Ga0496118_0002166_17357_18115 205
5 3300046530 Ga0495654_0003205 Ga0495654_0003205_5000_5758 219
6 3300048921 Ga0496118_0273626 Ga0496118_0273626_14_739 225
7 iso_pu_bacteria 2600255256 2601533821 225
8 iso_pu_bacteria 2600255257 2601540958 225
9 iso_pu_bacteria 2600255310 2601759401 225
10 iso_pu_bacteria 2600255311 2601762623 225
11 iso_pu_bacteria 2602042046 2603640461 225
12 iso_pu_bacteria 2811995292 2813730770 225
13 iso_pu_bacteria 2814123068 2814698385 225
14 iso_pu_bacteria 2842849001 2842850729 225
15 iso_pu_bacteria 3000376612 3000377045 225
16 iso_pu_bacteria 2654587920 2656276712 226
17 iso_pu_bacteria 2687453601 2689447429 226
18 3300003856 Ga0058692_1000193 Ga0058692_100019322 227
19 3300027312 Ga0209371_1000161 Ga0209371_100016110 227
20 3300030500 Ga0268256_1000012 Ga0268256_1000012445 227
21 iso_pu_bacteria 2888373701 2888374301 227
22 iso_pu_bacteria 2554235234 2555257819 228
23 iso_pu_bacteria 2971820967 2971823595 228
24 iso_pu_bacteria 2772190666 2772441239 229
25 iso_pu_bacteria 2888366609 2888371362 229
26 iso_pu_bacteria 2937967321 2937968907 229
27 iso_pu_bacteria 8004592986 8004593972 229
28 iso_pu_bacteria 8015394850 8015395150 229
29 3300017792 Ga0163161_10000028 Ga0163161_1000002866 230
30 iso_pu_bacteria 2508501071 2508854681 230
31 iso_pu_bacteria 2884086401 2884088184 230
32 iso_pu_bacteria 640753048 640940240 230
33 iso_pu_bacteria 2506520007 2506580874 231
34 iso_pu_bacteria 2506520008 2506586013 231
35 iso_pu_bacteria 2869551831 2869556872 231
36 iso_pu_bacteria 2881609920 2881609946 231
37 iso_pu_bacteria 2978975091 2978979635 231
38 3300009011 Ga0105251_10000015 Ga0105251_1000001559 232
39 3300025735 Ga0207713_1000003 Ga0207713_1000003433 232
40 3300046453 Ga0495627_000100 Ga0495627_000100_24769_25515 232
41 3300048922 Ga0496119_0002259 Ga0496119_0002259_5028_5762 232
42 3300048923 Ga0496120_0002081 Ga0496120_0002081_15713_16447 232
43 3300048927 Ga0496124_0021847 Ga0496124_0021847_4970_5704 232
44 3300048927 Ga0496124_0125936 Ga0496124_0125936_568_1266 232
45 3300048928 Ga0496125_0008947 Ga0496125_0008947_4973_5707 232
46 3300009011 Ga0105251_10000233 Ga0105251_1000023334 233
47 3300009011 Ga0105251_10002902 Ga0105251_100029026 233
48 3300009036 Ga0105244_10000313 Ga0105244_1000031323 233
49 3300009036 Ga0105244_10001094 Ga0105244_100010942 233
50 3300009036 Ga0105244_10222449 Ga0105244_102224492 233
51 3300009092 Ga0105250_10001569 Ga0105250_100015692 233
52 3300009101 Ga0105247_10000396 Ga0105247_1000039624 233
53 3300009148 Ga0105243_10005702 Ga0105243_100057023 233
54 3300025728 Ga0207655_1000106 Ga0207655_100010634 233
55 3300025728 Ga0207655_1119519 Ga0207655_11195192 233
56 3300025735 Ga0207713_1000850 Ga0207713_100085023 233
57 3300042006 Ga0439432_008290 Ga0439432_008290_852_1601 233
58 3300046457 Ga0495590_0111506 Ga0495590_0111506_13_714 233
59 3300046520 Ga0495637_0048761 Ga0495637_0048761_1039_1740 233
60 3300046530 Ga0495654_0014237 Ga0495654_0014237_3500_4201 233
61 3300048906 Ga0496103_0030247 Ga0496103_0030247_375_1124 233
62 3300048919 Ga0496116_0000077 Ga0496116_0000077_95100_95849 233
63 3300048920 Ga0496117_0000780 Ga0496117_0000780_8208_8942 233
64 3300048920 Ga0496117_0078013 Ga0496117_0078013_1234_1983 233
65 3300048921 Ga0496118_0000257 Ga0496118_0000257_55269_56003 233
66 3300048922 Ga0496119_0002844 Ga0496119_0002844_10887_11633 233
67 3300048922 Ga0496119_0003544 Ga0496119_0003544_8625_9368 233
68 3300048922 Ga0496119_0040160 Ga0496119_0040160_2204_2953 233
69 3300048923 Ga0496120_0000112 Ga0496120_0000112_58697_59443 233
70 3300048923 Ga0496120_0000139 Ga0496120_0000139_45708_46451 233
71 3300048923 Ga0496120_0018745 Ga0496120_0018745_1545_2294 233
72 3300048927 Ga0496124_0000100 Ga0496124_0000100_130600_131343 233
73 3300005272 Ga0065703_1020680 Ga0065703_10206802 234
74 3300006946 Ga0079104_1001908 Ga0079104_100190814 234
75 3300046530 Ga0495654_0000754 Ga0495654_0000754_21728_22480 234
76 3300046530 Ga0495654_0062887 Ga0495654_0062887_31_783 234
77 3300046794 Ga0495589_0000010 Ga0495589_0000010_108773_109525 234
78 3300006946 Ga0079104_1003399 Ga0079104_10033995 235
79 3300009011 Ga0105251_10000230 Ga0105251_1000023029 235
80 3300009174 Ga0105241_10000013 Ga0105241_1000001339 235
81 3300013100 Ga0157373_10038005 Ga0157373_100380052 235
82 3300014497 Ga0182008_10000674 Ga0182008_1000067413 235
83 3300025711 Ga0207696_1000068 Ga0207696_100006889 235
84 3300025735 Ga0207713_1000044 Ga0207713_1000044106 235
85 3300025735 Ga0207713_1000062 Ga0207713_100006269 235
86 3300025900 Ga0207710_10000145 Ga0207710_1000014557 235
87 3300025911 Ga0207654_10000016 Ga0207654_1000001670 235
88 3300027111 Ga0209281_1000107 Ga0209281_100010770 235
89 3300003856 Ga0058692_1001731 Ga0058692_10017312 236
90 3300027312 Ga0209371_1000704 Ga0209371_100070410 236
91 3300030500 Ga0268256_1000603 Ga0268256_100060310 236
92 3300046453 Ga0495627_049035 Ga0495627_049035_172_927 236
93 3300048924 Ga0496121_0001628 Ga0496121_0001628_34818_35597 239
94 3300048925 Ga0496122_0056812 Ga0496122_0056812_1530_2309 239
95 iso_pu_bacteria 2513237082 2513552810 239
96 iso_pu_bacteria 2513237083 2513561707 239
97 iso_pu_bacteria 2597489888 2597862748 239
98 iso_pu_bacteria 8003955200 8003958563 239
99 3300003856 Ga0058692_1002195 Ga0058692_10021952 240
100 3300009092 Ga0105250_10035873 Ga0105250_100358732 240
101 3300025711 Ga0207696_1013490 Ga0207696_10134903 240
102 3300027312 Ga0209371_1006533 Ga0209371_10065333 240
103 3300046501 Ga0495607_0000680 Ga0495607_0000680_28412_29134 240
104 3300046529 Ga0495652_0089209 Ga0495652_0089209_500_1225 240
105 3300013102 Ga0157371_10000156 Ga0157371_1000015637 241
106 3300039447 Ga0436361_0316011 Ga0436361_0316011_69_827 242
107 iso_pu_bacteria 2511231010 2511290323 242
108 iso_pu_bacteria 2643221713 2644621698 242
109 iso_pu_bacteria 3007855910 3007857378 242
110 3300039447 Ga0436361_0303310 Ga0436361_0303310_186_950 243
111 iso_pu_bacteria 2599185155 2599326680 244
112 3300046794 Ga0495589_0000597 Ga0495589_0000597_6633_7427 246
113 3300047446 Ga0495679_000763 Ga0495679_000763_6973_7767 246
114 3300046458 Ga0495591_000335 Ga0495591_000335_14935_15678 247
115 3300046507 Ga0495606_0000759 Ga0495606_0000759_31042_31785 247
116 iso_pu_bacteria 2511231017 2511334660 247
117 3300025728 Ga0207655_1001397 Ga0207655_10013976 248
118 3300025935 Ga0207709_10072211 Ga0207709_100722112 248
119 iso_pu_bacteria 2547132103 2547373468 248
120 3300013308 Ga0157375_10000142 Ga0157375_1000014223 249
121 3300046452 Ga0495617_002355 Ga0495617_002355_3037_3786 249
122 3300046457 Ga0495590_0001325 Ga0495590_0001325_5211_5960 249
123 3300046458 Ga0495591_005096 Ga0495591_005096_2983_3732 249
124 3300046463 Ga0495653_0078415 Ga0495653_0078415_216_965 249
125 3300046492 Ga0495585_0000789 Ga0495585_0000789_15864_16613 249
126 3300046501 Ga0495607_0000868 Ga0495607_0000868_11453_12202 249
127 3300046512 Ga0495610_0033570 Ga0495610_0033570_413_1162 249
128 3300046519 Ga0495632_0025074 Ga0495632_0025074_845_1594 249
129 3300046665 Ga0495661_0002131 Ga0495661_0002131_5104_5853 249
130 3300046692 Ga0495671_0066138 Ga0495671_0066138_115_864 249
131 3300046794 Ga0495589_0105913 Ga0495589_0105913_254_1003 249
132 3300046810 Ga0495660_0001544 Ga0495660_0001544_2061_2810 249
133 3300047321 Ga0495676_0000050 Ga0495676_0000050_16147_16896 249
134 3300047323 Ga0495683_0002659 Ga0495683_0002659_7167_7916 249
135 3300048927 Ga0496124_0003689 Ga0496124_0003689_12848_13597 249
136 3300053111 Ga0500572_006212 Ga0500572_006212_1244_1993 249
137 3300046660 Ga0495625_0015305 Ga0495625_0015305_2415_3224 250
138 3300047469 Ga0495673_0009028 Ga0495673_0009028_1998_2807 250
139 3300049459 Ga0495678_004307 Ga0495678_004307_4522_5331 250
140 2162886011 MRS1b_contig_4895430 MRS1b_0697.00003370 251
141 3300005288 Ga0065714_10214845 Ga0065714_102148451 251
142 3300005290 Ga0065712_10000132 Ga0065712_1000013256 251
143 3300006058 Ga0075432_10012982 Ga0075432_100129822 251
144 3300014497 Ga0182008_10024628 Ga0182008_100246282 251
145 3300027907 Ga0207428_10045262 Ga0207428_100452622 251
146 3300042137 Ga0450902_003965 Ga0450902_003965_31_786 251
147 3300046458 Ga0495591_001839 Ga0495591_001839_5837_6592 251
148 3300046460 Ga0495638_0008914 Ga0495638_0008914_5556_6311 251
149 3300046474 Ga0495605_0000026 Ga0495605_0000026_186707_187462 251
150 3300046474 Ga0495605_0000207 Ga0495605_0000207_18083_18838 251
151 3300046492 Ga0495585_0000519 Ga0495585_0000519_9807_10562 251
152 3300046499 Ga0495594_0004993 Ga0495594_0004993_4570_5325 251
153 3300046501 Ga0495607_0036984 Ga0495607_0036984_224_979 251
154 3300046506 Ga0495583_0000043 Ga0495583_0000043_34283_35038 251
155 3300046507 Ga0495606_0209763 Ga0495606_0209763_53_808 251
156 3300046512 Ga0495610_0014337 Ga0495610_0014337_3891_4646 251
157 3300046513 Ga0495616_0003277 Ga0495616_0003277_5818_6573 251
158 3300046515 Ga0495620_0000263 Ga0495620_0000263_30200_30955 251
159 3300046517 Ga0495630_0006155 Ga0495630_0006155_3627_4382 251
160 3300046518 Ga0495631_0002047 Ga0495631_0002047_8516_9271 251
161 3300046519 Ga0495632_0039184 Ga0495632_0039184_1590_2345 251
162 3300046520 Ga0495637_0001369 Ga0495637_0001369_4101_4856 251
163 3300046520 Ga0495637_0001421 Ga0495637_0001421_9776_10531 251
164 3300046524 Ga0495648_0000396 Ga0495648_0000396_3599_4354 251
165 3300046524 Ga0495648_0025362 Ga0495648_0025362_1033_1788 251
166 3300046524 Ga0495648_0061115 Ga0495648_0061115_236_991 251
167 3300046530 Ga0495654_0000801 Ga0495654_0000801_14873_15643 251
168 3300046530 Ga0495654_0001383 Ga0495654_0001383_11279_12034 251
169 3300046530 Ga0495654_0002315 Ga0495654_0002315_3606_4361 251
170 3300046538 Ga0495609_0000036 Ga0495609_0000036_34348_35103 251
171 3300046542 Ga0495597_0002382 Ga0495597_0002382_24_779 251
172 3300046542 Ga0495597_0024183 Ga0495597_0024183_1342_2097 251
173 3300046558 Ga0495633_0000143 Ga0495633_0000143_60274_61029 251
174 3300046615 Ga0495656_0021642 Ga0495656_0021642_524_1279 251
175 3300046648 Ga0495611_0008230 Ga0495611_0008230_2755_3510 251
176 3300046665 Ga0495661_0000121 Ga0495661_0000121_34403_35158 251
177 3300046679 Ga0495623_0184389 Ga0495623_0184389_392_1147 251
178 3300046691 Ga0495670_0033080 Ga0495670_0033080_1589_2344 251
179 3300046694 Ga0495649_0002158 Ga0495649_0002158_3431_4186 251
180 3300046694 Ga0495649_0018090 Ga0495649_0018090_1460_2215 251
181 3300046794 Ga0495589_0001775 Ga0495589_0001775_2231_2986 251
182 3300046810 Ga0495660_0004600 Ga0495660_0004600_2948_3703 251
183 3300046810 Ga0495660_0016972 Ga0495660_0016972_1355_2110 251
184 3300047320 Ga0495672_0001177 Ga0495672_0001177_21922_22677 251
185 3300047320 Ga0495672_0003623 Ga0495672_0003623_212_967 251
186 3300047320 Ga0495672_0007306 Ga0495672_0007306_4799_5554 251
187 3300047444 Ga0495675_0002490 Ga0495675_0002490_4819_5574 251
188 3300047444 Ga0495675_0006611 Ga0495675_0006611_4583_5338 251
189 3300047469 Ga0495673_0000425 Ga0495673_0000425_24753_25508 251
190 3300047470 Ga0495681_0007553 Ga0495681_0007553_5078_5833 251
191 3300048925 Ga0496122_0002538 Ga0496122_0002538_15099_15854 251
192 3300048926 Ga0496123_0001938 Ga0496123_0001938_9799_10554 251
193 3300049459 Ga0495678_000007 Ga0495678_000007_417927_418682 251

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02753

PapD_C

Pili assembly chaperone PapD, C-terminal domain

196

259

0.96

PF00345

PapD_N

Pili and flagellar-assembly chaperone, PapD N-terminal domain

53

171

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
5ghu-assembly1.cif.gz_A crystal structure of yadv chaperone at 1.63 angstrom 0.9277 33 246
2co7-assembly1.cif.gz_B salmonella enterica safa pilin in complex with the safb chaperone (type ii) 0.9192 35 246
5ghu-assembly1.cif.gz_A crystal structure of yadv chaperone at 1.63 angstrom 0.9178 33 246
7szo-assembly2.cif.gz_I structure of a bacterial fimbrial tip containing foch 0.9103 35 248
3q48-assembly1.cif.gz_A crystal structure of pseudomonas aeruginosa cupb2 chaperone 0.9099 36 248
ID Description Score Start End Superfamily
af_P33128_27_148_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9335 36 148 2.60.40.10
3jwnI01 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9302 36 149 2.60.40.10
af_P75856_33_145_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9288 36 148 2.60.40.10
af_P33342_35_154_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9288 36 149 2.60.40.10
4ayfA01 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9246 36 148 2.60.40.10
ID Description Score Start End GO Terms
AF-D4BKI2-F1-model_v4 Gram-negative pili assembly chaperone domain protein 0.9476 31 245 GO:0030288
GO:0061077
GO:0071555
AF-A0A248KKZ0-F1-model_v4 Fimbrial chaperone 0.9376 27 245 GO:0030288
GO:0061077
GO:0071555
AF-A0A4U6LV26-F1-model_v4 Fimbrial chaperone 0.9294 32 246 GO:0030288
GO:0061077
GO:0071555
AF-I6EWD6-F1-model_v4 Gram-negative pili assembly chaperone, N-terminal domain protein 0.926 27 246 GO:0030288
GO:0061077
GO:0071555
AF-A0A845TGY6-F1-model_v4 deleted 0.9245 36 246

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pLDDT pTM Quality
87.98 0.79 High
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Predicted Structure (AlphaFold2)

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