F296223

General Info

Members Datasets Scaffolds Average Seq Length
192 169 384 880

Family's Representative Sequence

Representative Sequence 3300048925|Ga0496122_0038694|Ga0496122_0038694_605_3370
Length 913
Sequence MRTEGFFCWLELNLNEKTEGIHMAELHEEELETAATDTTKTAGGMPTTYDPKEAETKWYEYWKQNGYFEAGKRPDKETFTIVIPPPNVTGMLHIGHALDFTLQDILTRMKRMQGYDTLWLPGSDHAGIATQTKVEQKLRAEGITRYDLGREKFLEKVWEWKGHYNDIIRDQWAKMGLALDYSRERFTLDEGLNKAVRQVFVKLYEKGLIYRGKYIINWDPAARTALSDIEVEYKEVQGHLYHLEYPLKDGSGSIIVATTRPETMLGDTAVAVNPKDERYTHLIGKTLVLPIVGREIPVIADDYVEKEFGSGAVKITPAHDPNDFEVGRRHNLPQVLVMDETGTMNENAGKYNGQDRFECRKQLVADLKEQGVLVKIEDHLHQVGHSERSGAVIEPYLSTQWFVSMKPLAERAIAAQKSGQGTHFVTERFERTYMQWIENVRDWCISRQLWWGHRIPAYYCEACGELHVSEEEVTACAKCGSAQIRQDEDVLDTWFSSGLWPFSTLGWPEATDDLKRYYPVSVLVTGYDIIPFWVSRMIFMGLEFTDEIPFKDVLIHGLVRDSEGRKMSKSLGNGVDPLEVIEKYGADAMRFMISTSSTQGQDLRFRWERVEQIRNFANKIWNASRFALMNLEGVELADVHLNRKLSTSDRWVLHRLNETVRDVTRLMDQYEFGETGRLLYNFIWDDLCDWYIEFAKLSLYGSDMEAKASTQAVLAYVLDRTLRLIHPFMPFISEEIWQHLPHEGETIMLSDWPQYDPALEAPEAVGEMAFLMDIIRSVRNIRAEVNVPMSKKIELLLKPADSQAQAALERNTEYLKRFCGTSLLEVNTALEVPAKAMTAVVTGAELYLPLAGLIDIAQEIVRLEKEIQSEKKLANQGFVAKAPAKVIEEEKAKMADYSAKREIVAARLAELKG

Samples

Sample ID Description Type Environment
1 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
5 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
6 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
7 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
8 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
9 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
10 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
11 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
12 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
13 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
14 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
15 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
16 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
17 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
18 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
19 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
20 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
21 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
22 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
23 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
24 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
25 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
26 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
27 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
28 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
29 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
30 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
31 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
32 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
33 2511231119 Bacillus velezensis CAU B946 Isolate Rhizosphere
34 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
35 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
36 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
37 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
38 2545555800 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
39 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
40 2554235283 Bacillus safensis VK Isolate Rhizosphere
41 2554235469 Sporolactobacillus laevolacticus DSM 442 Isolate Rhizosphere
42 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
43 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
44 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
45 2576861599 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
46 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
47 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
48 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
49 2599185353 Staphylococcus sp. NFPP34 Isolate Rhizoplane
50 2600254943 Staphylococcus pasteuri NFIX07 Isolate Rhizoplane
51 2600255229 Lactobacillus acidophilus A 16 Isolate Rhizosphere
52 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
53 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
54 2630968484 Bacillus methylotrophicus KACC 13105 Isolate Rhizosphere
55 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
56 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
57 2643221735 Bacillus sp. Root920 Isolate Unclassified
58 2648501850 Bacillus amyloliquefaciens RHNK22 Isolate Rhizosphere
59 2671180694 Paenibacillus sp. A3 Isolate Unclassified
60 2671180844 Bacillus amyloliquefaciens Bs006 Isolate Unclassified
61 2684623153 Bacillus pumilus SH-B9 Isolate Unclassified
62 2687453109 Bacillus pumilus SH-B11 Isolate Unclassified
63 2695420354 Bacillus sp. Co1-6 Isolate Unclassified
64 2711768088 Sporolactobacillus terrae DSM 11697 Isolate Rhizosphere
65 2716884898 Bacillus methylotrophicus FKM10 Isolate Rhizosphere
66 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
67 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
68 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
69 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
70 2744054657 Brevibacillus sp. SKDU10 Isolate Unclassified
71 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
72 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
73 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
74 2808606399 Bacillus sp. SJZ110 Isolate Rhizosphere
75 2811994870 Bacillus sp. JB4 Isolate Unclassified
76 2816332295 Bacillus paralicheniformis MDJK30 Isolate Rhizosphere
77 2816332336 Brevibacillus laterosporus ZQ2 Isolate Unclassified
78 2818991459 Paenibacillus sp. 597 Isolate Unclassified
79 2818991468 Bacillus safensis 3300 Isolate Rhizosphere
80 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
81 2823526263 Bacillus altitudinis P-10 Isolate Unclassified
82 2852673933 Sporosarcina sp. JAI121 Isolate Rhizosphere
83 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
84 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
85 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
86 2857472729 Cohnella sp. R-74144 Isolate Unclassified
87 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
88 2857609550 Domibacillus sp. R-71929 Isolate Unclassified
89 2860837431 Bacillus sp. WR11 Isolate Unclassified
90 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
91 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
92 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
93 2877768649 Bacillus amyloliquefaciens Y14 Isolate Rhizosphere
94 2880169592 Bacillus velezensis T20E-257 Isolate Unclassified
95 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
96 2881644220 Siminovitchia terrae LMG 29736 Isolate Rhizosphere
97 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
98 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
99 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
100 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
101 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
102 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
103 2897109615 Bacillus amyloliquefaciens YP6 Isolate Unclassified
104 2898907183 Brevibacillus sp. SYP-B805 Isolate Rhizosphere
105 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
106 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
107 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
108 2904560550 Bacillus velezensis 1780 Isolate Rhizosphere
109 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
110 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
111 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
112 2908665501 Bacillus pumilus 1391 Isolate Rhizosphere
113 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
114 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
115 2919093281 Bacillus safensis 1383 Isolate Rhizosphere
116 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
117 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
118 2919726948 Bacillus pumilus 4489 Isolate Unclassified
119 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
120 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
121 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
122 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
123 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
124 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
125 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
126 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
127 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
128 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
129 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
130 2954773129 Bacillus sp. TBS-096 Isolate Rhizosphere
131 2962290636 Bacillus subtilis TLO3 Isolate Rhizosphere
132 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
133 2969136845 Bacillus subtilis TLO3 Isolate Rhizosphere
134 2969141011 Bacillus velezensis MH25 Isolate Unclassified
135 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
136 2969770375 Bacillus subtilis GM5 Isolate Rhizosphere
137 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
138 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
139 2971511577 Paenibacillus apii 7124 Isolate Rhizosphere
140 2971893375 Bacillus sp. HNA3 Isolate Rhizosphere
141 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
142 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
143 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
144 2980492589 Bacillus subtilis GQJK2 Isolate Rhizosphere
145 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
146 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
147 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
148 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
149 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
150 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
151 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
152 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
153 3006858327 Bacillus paralicheniformis SUBG0010 Isolate Unclassified
154 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
155 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
156 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
157 8022630665 Bacillus sp. PW192 Isolate Rhizosphere
158 8022653035 Bacillus sp. Rc4 Isolate Unclassified
159 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
160 8051952484 Bacillus amyloliquefaciens K2 Isolate Rhizosphere
161 8052174270 Bacillus velezensis CH13 Isolate Rhizosphere
162 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
163 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
164 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
165 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
166 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified
167 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere
168 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere
169 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 26.04
Metatranscriptomes 1.04
Isolates 72.92

Biome Distribution

Category Percentage (%)
Aerial Root 1.04
Bulb 0
Endosphere 7.81
Nodule 1.04
Rhizoplane 1.56
Rhizosphere 46.88
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496122_0038694 3300048925 Bacteria 3815
2 JGI25151J46595_10000060 3300003187 Bacteria 146867
3 Ga0006562J51391_1005834 3300003578 Bacteria 10082
4 Ga0006562J51391_1006809 3300003578 Bacteria 6139
5 Ga0055538_1001021 3300003751 Bacteria 6377
6 Ga0055532_1001128 3300003758 Bacteria 8184
7 Ga0055541_1000141 3300003841 Bacteria 37253
8 Ga0209784_100038 3300025224 Bacteria 253212
9 Ga0209566_100077 3300025225 Bacteria 160414
10 Ga0209566_100185 3300025225 Bacteria 65592
11 Ga0209566_100375 3300025225 Bacteria 36980
12 Ga0209147_100050 3300025229 Bacteria 274639
13 Ga0209437_100672 3300025233 Bacteria 18679
14 Ga0209258_103064 3300025242 Bacteria 3825
15 Ga0209025_1000001 3300025294 Bacteria 1888151
16 Ga0209025_1003861 3300025294 Bacteria 13606
17 Ga0209025_1021203 3300025294 Bacteria 3512
18 Ga0316577_10002414 3300031733 Bacteria 9241
19 Ga0316577_10011396 3300031733 Bacteria 4814
20 Ga0316582_0018196 3300036647 Bacteria 4084
21 Ga0316584_0021258 3300036712 Bacteria 4714
22 Ga0316584_0026726 3300036712 Bacteria 4244
23 Ga0395899_0025972 3300037312 Bacteria 4420
24 Ga0395899_0029566 3300037312 Bacteria 4121
25 Ga0451855_0548933 3300041511 Bacteria 4937
26 Ga0439449_0001044 3300042007 Bacteria 10911
27 Ga0439462_0004605 3300042015 Bacteria 3376
28 Ga0466969_0012291 3300044656 Bacteria 4518
29 Ga0453684_0014973 3300044712 Bacteria 12323
30 Ga0466959_0007795 3300045049 Bacteria 7534
31 Ga0495626_0016615 3300048091 Bacteria 3735
32 Ga0496119_0000433 3300048922 Bacteria 57394
33 Ga0496119_0006510 3300048922 Bacteria 10780
34 Ga0496120_0000396 3300048923 Bacteria 70231
35 Ga0496121_0051501 3300048924 Bacteria 3466
36 Ga0496122_0005314 3300048925 Bacteria 15404
37 Ga0496122_0027079 3300048925 Bacteria 4914
38 Ga0496122_0031987 3300048925 Bacteria 4361
39 Ga0496122_0036959 3300048925 Bacteria 3940
40 Ga0496122_0067738 3300048925 Bacteria 2568
41 Ga0496123_0004829 3300048926 Bacteria 13901
42 Ga0496123_0013026 3300048926 Bacteria 7021
43 Ga0496124_0000949 3300048927 Bacteria 46304
44 Ga0496124_0002046 3300048927 Bacteria 27402
45 Ga0496124_0043111 3300048927 Bacteria 3880
46 Ga0496125_0000618 3300048928 Bacteria 60027
47 Ga0496125_0003940 3300048928 Bacteria 17517
48 Ga0496125_0009920 3300048928 Bacteria 9683
49 Ga0496126_0001276 3300048929 Bacteria 40468
50 Ga0496126_0005201 3300048929 Bacteria 15025
51 Ga0496126_0013330 3300048929 Bacteria 8369
52 Ga0500566_0002002 3300053094 Bacteria 12021
53 2511178290 2510917027 Bacteria 5287437
54 2511700479 2511231119 Bacteria 4019861
55 2512640087 2512564013 Bacteria 6286191
56 2512735498 2512564039 Bacteria 8739048
57 2524186858 2524023129 Bacteria 6762600
58 2540607692 2540341094 Bacteria 4061186
59 2545557178 2545555800 Bacteria 4222588
60 2550900307 2548877040 Bacteria 7507281
61 2555467899 2554235283 Bacteria 3683090
62 2556062843 2554235469 Bacteria 3590176
63 2563929969 2563366752 Bacteria 4961801
64 2573038366 2571042588 Bacteria 5045676
65 2578338204 2576861424 Bacteria 5270569
66 2578931437 2576861599 Bacteria 4217202
67 2580935586 2579778775 Bacteria 5360914
68 2587740427 2585428059 Bacteria 8696589
69 2595318019 2593339198 Bacteria 7267884
70 2600198430 2599185353 Bacteria 2219443
71 2600402060 2600254943 Bacteria 2613887
72 2601445426 2600255229 Bacteria 1988965
73 2601640559 2600255286 Bacteria 5390125
74 2621276623 2619619294 Bacteria 5575484
75 2631982941 2630968484 Bacteria 3876276
76 2643738962 2643221543 Bacteria 6628015
77 2644426675 2643221676 Bacteria 8119172
78 2644741341 2643221735 Bacteria 3676263
79 2651531644 2648501850 Bacteria 3975476
80 2673823695 2671180694 Bacteria 7506943
81 2674418700 2671180844 Bacteria 4164150
82 2686997711 2684623153 Bacteria 3878815
83 2687499102 2687453109 Bacteria 3860091
84 2695628472 2695420354 Bacteria 3922431
85 2712198064 2711768088 Bacteria 3195027
86 2717915832 2716884898 Bacteria 3928789
87 2723605529 2721755693 Bacteria 6126117
88 2728530456 2728368933 Bacteria 7044283
89 2730136216 2728369359 Bacteria 5621728
90 2738839479 2738541299 Bacteria 4020721
91 2745169804 2744054657 Bacteria 5016802
92 2753810159 2751185905 Bacteria 6142767
93 2793181897 2791355222 Bacteria 5898266
94 2802438873 2802428803 Bacteria 5806948
95 2809056068 2808606399 Bacteria 4021018
96 2812316913 2811994870 Bacteria 3776934
97 2817481064 2816332295 Bacteria 4352468
98 2817617498 2816332336 Bacteria 5207640
99 2819672900 2818991459 Bacteria 8736032
100 2819723977 2818991468 Bacteria 3723169
101 2821117173 2821111986 Bacteria 6894338
102 2823528920 2823526263 Bacteria 3765752
103 2852675823 2852673933 Bacteria 3347676
104 2857456630 2857453340 Bacteria 8090534
105 2857463404 2857460504 Bacteria 5194327
106 2857468933 2857465823 Bacteria 6772595
107 2857473671 2857472729 Bacteria 6568124
108 2857596415 2857591370 Bacteria 6569758
109 2857610628 2857609550 Bacteria 3753890
110 2860840464 2860837431 Bacteria 4202080
111 2864735439 2864733723 Bacteria 6770668
112 2864998791 2864997549 Bacteria 5139696
113 2865003186 2865002811 Bacteria 6333767
114 2877771369 2877768649 Bacteria 3957164
115 2880172236 2880169592 Bacteria 3900066
116 2881640357 2881636855 Bacteria 5205297
117 2881645084 2881644220 Bacteria 5302661
118 2885533218 2885526491 Bacteria 7164189
119 2888582946 2888578766 Bacteria 6743310
120 2889047444 2889042446 Bacteria 7618936
121 2889054852 2889049205 Bacteria 7524325
122 2889281504 2889276214 Bacteria 5979355
123 2889300672 2889295896 Bacteria 4704906
124 2897112511 2897109615 Bacteria 4009619
125 2898909240 2898907183 Bacteria 4067722
126 2904117342 2904113452 Bacteria 7796941
127 2904162599 2904162308 Bacteria 7086713
128 2904495775 2904490793 Bacteria 7046938
129 2904564432 2904560550 Bacteria 4029838
130 2904597754 2904595352 Bacteria 6124848
131 2904601117 2904595352 Bacteria 6124848
132 2904756220 2904755435 Bacteria 7986759
133 2907207403 2907202186 Bacteria 6632024
134 2908667876 2908665501 Bacteria 3678115
135 2915600420 2915597211 Bacteria 6475886
136 2915608108 2915606848 Bacteria 6032732
137 2919095665 2919093281 Bacteria 3660974
138 2919164352 2919160200 Bacteria 6929020
139 2919432064 2919425241 Bacteria 8055701
140 2919728616 2919726948 Bacteria 3696050
141 2925326501 2925326138 Bacteria 9652120
142 2928514709 2928510474 Bacteria 4815308
143 2929185583 2929183550 Bacteria 6377511
144 2929210917 2929206907 Bacteria 5918291
145 2931384495 2931384279 Bacteria 7299545
146 2936362013 2936361878 Bacteria 5632809
147 2938653703 2938649242 Bacteria 7118381
148 2939684731 2939679117 Bacteria 6921672
149 2939704067 2939702853 Bacteria 5139229
150 2945996867 2945991243 Bacteria 7008369
151 2946059542 2946053406 Bacteria 6978655
152 2954773553 2954773129 Bacteria 3741715
153 2962293666 2962290636 Bacteria 4072939
154 2968562437 2968558590 Bacteria 6956864
155 2969139669 2969136845 Bacteria 3923176
156 2969143821 2969141011 Bacteria 4118468
157 2969767710 2969765954 Bacteria 4216713
158 2969772927 2969770375 Bacteria 4271280
159 2971409046 2971403814 Bacteria 7370929
160 2971414063 2971410472 Bacteria 8311090
161 2971515825 2971511577 Bacteria 5404012
162 2971896038 2971893375 Bacteria 3929648
163 2980130192 2980125574 Bacteria 5567337
164 2980178328 2980176882 Bacteria 5397533
165 2980183479 2980182181 Bacteria 9454109
166 2980495456 2980492589 Bacteria 4072961
167 2981287409 2981284811 Bacteria 4641497
168 2981292605 2981289755 Bacteria 4641509
169 2981983176 2981980479 Bacteria 4641628
170 2981988090 2981985349 Bacteria 4641497
171 2984530732 2984527788 Bacteria 5288478
172 2984536839 2984532647 Bacteria 5288506
173 2988229948 2988225383 Bacteria 7221625
174 2996637013 2996632988 Bacteria 6921523
175 3006861473 3006858327 Bacteria 4317835
176 3006882365 3006879489 Bacteria 4064221
177 648171588 648028048 Bacteria 5394884
178 8002322092 8002317523 Bacteria 8051857
179 8022632110 8022630665 Bacteria 3886130
180 8022654632 8022653035 Bacteria 4035078
181 8046999544 8046991243 Bacteria 8497463
182 8051955061 8051952484 Bacteria 3926774
183 8052176296 8052174270 Bacteria 3881265
184 8054470476 8054465665 Bacteria 7323556
185 8054800309 8054795415 Bacteria 9785225
186 8055637606 8055632911 Bacteria 5283357
187 8056539142 8056533031 Bacteria 8964429
188 8057473436 8057473075 Bacteria 5892720
189 8057475886 8057473075 Bacteria 5892720
190 8057635636 8057632132 Bacteria 4726859
191 8057737267 8057733483 Bacteria 6578323
192 8057977588 8057977335 Bacteria 5694872
193 Ga0496122_0038694
194 JGI25151J46595_10000060
195 Ga0006562J51391_1005834
196 Ga0006562J51391_1006809
197 Ga0055538_1001021
198 Ga0055532_1001128
199 Ga0055541_1000141
200 Ga0209784_100038
201 Ga0209566_100077
202 Ga0209566_100185
203 Ga0209566_100375
204 Ga0209147_100050
205 Ga0209437_100672
206 Ga0209258_103064
207 Ga0209025_1000001
208 Ga0209025_1003861
209 Ga0209025_1021203
210 Ga0316577_10002414
211 Ga0316577_10011396
212 Ga0316582_0018196
213 Ga0316584_0021258
214 Ga0316584_0026726
215 Ga0395899_0025972
216 Ga0395899_0029566
217 Ga0451855_0548933
218 Ga0439449_0001044
219 Ga0439462_0004605
220 Ga0466969_0012291
221 Ga0453684_0014973
222 Ga0466959_0007795
223 Ga0495626_0016615
224 Ga0496119_0000433
225 Ga0496119_0006510
226 Ga0496120_0000396
227 Ga0496121_0051501
228 Ga0496122_0005314
229 Ga0496122_0027079
230 Ga0496122_0031987
231 Ga0496122_0036959
232 Ga0496122_0067738
233 Ga0496123_0004829
234 Ga0496123_0013026
235 Ga0496124_0000949
236 Ga0496124_0002046
237 Ga0496124_0043111
238 Ga0496125_0000618
239 Ga0496125_0003940
240 Ga0496125_0009920
241 Ga0496126_0001276
242 Ga0496126_0005201
243 Ga0496126_0013330
244 Ga0500566_0002002
245 2511178290
246 2511700479
247 2512640087
248 2512735498
249 2524186858
250 2540607692
251 2545557178
252 2550900307
253 2555467899
254 2556062843
255 2563929969
256 2573038366
257 2578338204
258 2578931437
259 2580935586
260 2587740427
261 2595318019
262 2600198430
263 2600402060
264 2601445426
265 2601640559
266 2621276623
267 2631982941
268 2643738962
269 2644426675
270 2644741341
271 2651531644
272 2673823695
273 2674418700
274 2686997711
275 2687499102
276 2695628472
277 2712198064
278 2717915832
279 2723605529
280 2728530456
281 2730136216
282 2738839479
283 2745169804
284 2753810159
285 2793181897
286 2802438873
287 2809056068
288 2812316913
289 2817481064
290 2817617498
291 2819672900
292 2819723977
293 2821117173
294 2823528920
295 2852675823
296 2857456630
297 2857463404
298 2857468933
299 2857473671
300 2857596415
301 2857610628
302 2860840464
303 2864735439
304 2864998791
305 2865003186
306 2877771369
307 2880172236
308 2881640357
309 2881645084
310 2885533218
311 2888582946
312 2889047444
313 2889054852
314 2889281504
315 2889300672
316 2897112511
317 2898909240
318 2904117342
319 2904162599
320 2904495775
321 2904564432
322 2904597754
323 2904601117
324 2904756220
325 2907207403
326 2908667876
327 2915600420
328 2915608108
329 2919095665
330 2919164352
331 2919432064
332 2919728616
333 2925326501
334 2928514709
335 2929185583
336 2929210917
337 2931384495
338 2936362013
339 2938653703
340 2939684731
341 2939704067
342 2945996867
343 2946059542
344 2954773553
345 2962293666
346 2968562437
347 2969139669
348 2969143821
349 2969767710
350 2969772927
351 2971409046
352 2971414063
353 2971515825
354 2971896038
355 2980130192
356 2980178328
357 2980183479
358 2980495456
359 2981287409
360 2981292605
361 2981983176
362 2981988090
363 2984530732
364 2984536839
365 2988229948
366 2996637013
367 3006861473
368 3006882365
369 648171588
370 8002322092
371 8022632110
372 8022654632
373 8046999544
374 8051955061
375 8052176296
376 8054470476
377 8054800309
378 8055637606
379 8056539142
380 8057473436
381 8057475886
382 8057635636
383 8057737267
384 8057977588

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00133

tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

57

606

0.97

PF08264

Anticodon_1

Anticodon-binding domain of tRNA ligase

649

797

0.93

PF10458

Val_tRNA-synt_C

Valyl tRNA synthetase tRNA binding arm

855

912

0.9

PF13603

tRNA-synt_1_2

Leucyl-tRNA synthetase, editing domain

275

359

0.87

PF09334

tRNA-synt_1g

tRNA synthetases class I (M)

79

238

0.79

PF09334

tRNA-synt_1g

tRNA synthetases class I (M)

507

625

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wka-assembly1.cif.gz_A structural basis for non-cognate amino acid discrimination by the valyl-trna synthetase editing domain 0.9667 201 342
1wka-assembly1.cif.gz_A structural basis for non-cognate amino acid discrimination by the valyl-trna synthetase editing domain 0.9535 201 342
4xkz-assembly1.cif.gz_A crystal structure of the c-terminal anticodon loop binding domain of a valyl-trna synthetase from pseudomonas aeruginosa 0.9335 576 811
4k48-assembly1.cif.gz_A structure of the streptococcus pneumoniae leucyl-trna synthetase editing domain 0.9084 203 335
7pqk-assembly1.cif.gz_A co-crystal structure of m. tuberculosis leurs in complex with the adduct formed by prodrug cmpd1 with adenosine-monophosphate 0.9039 203 335
ID Description Score Start End Superfamily
af_Q2FXR8_200_287_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9947 205 292 3.90.740.10
af_Q2FXR8_517_743_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.992 523 747 1.10.730.10
af_A0A0P0XWD3_309_435_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9869 209 332 3.90.740.10
af_Q2FXR8_200_287_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9836 205 292 3.90.740.10
af_A0A0R0FN16_22_167_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9815 199 342 3.90.740.10
ID Description Score Start End GO Terms
AF-A0A351TXW3-F1-model_v4 valine--tRNA ligase (EC 6.1.1.9) (Valyl-tRNA synthetase) 0.9896 217 347 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438
AF-A0A351TXW3-F1-model_v4 valine--tRNA ligase (EC 6.1.1.9) (Valyl-tRNA synthetase) 0.9605 217 347 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438
AF-A0A7S1HK68-F1-model_v4 valine--tRNA ligase (EC 6.1.1.9) (Valyl-tRNA synthetase) 0.957 227 369 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438
AF-A0A3D0S0S0-F1-model_v4 valine--tRNA ligase (EC 6.1.1.9) (Valyl-tRNA synthetase) 0.956 201 305 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438
AF-A0A656K7X9-F1-model_v4 deleted 0.9555 148 482

Map