F295109

General Info

Members Datasets Scaffolds Average Seq Length
192 149 384 236

Family's Representative Sequence

Representative Sequence 3300005334|Ga0068869_100277286|Ga0068869_1002772862
Length 257
Sequence VALEDREYTGQSRVSIARKKRAAADSRVAVVTGANRGIGFETCRLLAKAGINVVLTSRDAAKGEAACKALVADGLPVFYHQLDVTGAASVQALADFMADEFGRCDVLVNNAGVMKDRRGAPFLESSVETFRETLEINTLGPLQVTQALLPIMLRQRYGRIVNVSSGLGQLSGMGSDKPAYRMSKTALNALTRIVASESRHANILVNAASPGWVKTDMGGPDAPLSAAEGADTIVWLATLPDDGPTGGYFRDRKPIPW

Samples

Sample ID Description Type Environment
1 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
2 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
3 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
29 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
32 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
56 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
57 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
58 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
85 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
89 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
90 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
91 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
92 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
93 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
94 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
95 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
96 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
97 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
98 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
99 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
100 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
101 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
102 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
103 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
104 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
105 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
106 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
107 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
108 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
109 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
110 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
111 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
112 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
113 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
114 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
115 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
116 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
117 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
118 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
130 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
131 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
132 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
133 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
134 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
135 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
136 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
137 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
138 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
139 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
140 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
142 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
143 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
144 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
145 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
146 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
147 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
148 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
149 2901300506 Cupriavidus sp. UYMSc13B Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.44
Metatranscriptomes 0.52
Isolates 1.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.65
Nodule 0
Rhizoplane 2.08
Rhizosphere 92.71
Stem 0
Stem Tuber 0
Unclassified 3.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_100277286 3300005334 Bacteria 1347
2 Ga0068869_100004242 3300005334 Bacteria 8893
3 Ga0068869_100140825 3300005334 Bacteria 1862
4 Ga0068868_100002281 3300005338 Bacteria 13257
5 Ga0068868_100711842 3300005338 Bacteria 899
6 Ga0070660_100219614 3300005339 Bacteria 1544
7 Ga0070691_10094633 3300005341 Bacteria 1477
8 Ga0070661_100046220 3300005344 Bacteria 3184
9 Ga0070669_100063699 3300005353 Bacteria 2714
10 Ga0070675_100397237 3300005354 Bacteria 1229
11 Ga0070671_100006639 3300005355 Bacteria 9248
12 Ga0070671_100813000 3300005355 Bacteria 814
13 Ga0070673_100025222 3300005364 Bacteria 4372
14 Ga0070673_100444688 3300005364 Bacteria 1165
15 Ga0070688_100616094 3300005365 Bacteria 832
16 Ga0070659_100203077 3300005366 Bacteria 1632
17 Ga0070713_100051115 3300005436 Bacteria 3418
18 Ga0070708_100584759 3300005445 Bacteria 1053
19 Ga0068867_100008662 3300005459 Bacteria 7183
20 Ga0068867_100026104 3300005459 Bacteria 4193
21 Ga0068867_100145215 3300005459 Bacteria 1858
22 Ga0070706_100031139 3300005467 Bacteria 4920
23 Ga0070699_100161623 3300005518 Unclassified 1982
24 Ga0070697_100548986 3300005536 Bacteria 1013
25 Ga0070672_100198431 3300005543 Bacteria 1677
26 Ga0070696_100178479 3300005546 Bacteria 1574
27 Ga0070665_100031041 3300005548 Bacteria 5378
28 Ga0070704_100685147 3300005549 Bacteria 908
29 Ga0070664_100076717 3300005564 Bacteria 2872
30 Ga0068852_100000657 3300005616 Bacteria 22644
31 Ga0068852_100893349 3300005616 Bacteria 905
32 Ga0068859_100006120 3300005617 Bacteria 12223
33 Ga0068858_100277269 3300005842 Bacteria 1596
34 Ga0068862_100188242 3300005844 Bacteria 1856
35 Ga0081455_10005886 3300005937 Bacteria 13323
36 Ga0081538_10008383 3300005981 Bacteria 8782
37 Ga0081540_1001811 3300005983 Bacteria 17938
38 Ga0081540_1017143 3300005983 Bacteria 4496
39 Ga0081539_10021244 3300005985 Bacteria 4345
40 Ga0075368_10161721 3300006042 Bacteria 938
41 Ga0075364_10158828 3300006051 Bacteria 1526
42 Ga0075367_10126670 3300006178 Bacteria 1576
43 Ga0097621_100071918 3300006237 Unclassified 2860
44 Ga0097621_100078999 3300006237 Bacteria 2734
45 Ga0068871_100007836 3300006358 Bacteria 7651
46 Ga0075428_100737584 3300006844 Bacteria 1048
47 Ga0075434_100404636 3300006871 Bacteria 1386
48 Ga0068865_100077910 3300006881 Bacteria 2370
49 Ga0068865_100478990 3300006881 Bacteria 1034
50 Ga0097620_100006120 3300006931 Bacteria 12223
51 Ga0075435_100872303 3300007076 Bacteria 784
52 Ga0111539_10025076 3300009094 Bacteria 7309
53 Ga0105245_10738374 3300009098 Bacteria 1020
54 Ga0105245_10797512 3300009098 Bacteria 982
55 Ga0114129_11205137 3300009147 Bacteria 943
56 Ga0105243_10068765 3300009148 Bacteria 2855
57 Ga0105241_10190005 3300009174 Bacteria 1709
58 Ga0105242_10209783 3300009176 Bacteria 1735
59 Ga0105242_10334134 3300009176 Unclassified 1394
60 Ga0105248_10008221 3300009177 Bacteria 11464
61 Ga0105237_10081814 3300009545 Bacteria 3220
62 Ga0105249_10252397 3300009553 Bacteria 1749
63 Ga0105249_10645408 3300009553 Bacteria 1116
64 Ga0105239_11169573 3300010375 Bacteria 886
65 Ga0105246_10327722 3300011119 Bacteria 1247
66 Ga0157378_10067917 3300013297 Bacteria 3196
67 Ga0163162_10232876 3300013306 Bacteria 1972
68 Ga0157375_10118370 3300013308 Bacteria 2755
69 Ga0157375_10193026 3300013308 Bacteria 2191
70 Ga0157380_10095814 3300014326 Bacteria 2459
71 Ga0157379_10013724 3300014968 Bacteria 7100
72 Ga0157376_10040639 3300014969 Bacteria 3802
73 Ga0209051_1019829 3300025303 Bacteria 2921
74 Ga0207684_10035640 3300025910 Bacteria 4225
75 Ga0207649_10206945 3300025920 Bacteria 1390
76 Ga0207650_10001127 3300025925 Bacteria 19637
77 Ga0207706_10747326 3300025933 Bacteria 833
78 Ga0207686_10077889 3300025934 Unclassified 2154
79 Ga0207669_10109247 3300025937 Bacteria 1849
80 Ga0207704_10059159 3300025938 Bacteria 2364
81 Ga0207704_10172851 3300025938 Bacteria 1552
82 Ga0207691_10001444 3300025940 Bacteria 23682
83 Ga0207711_10022480 3300025941 Bacteria 5273
84 Ga0207689_10001266 3300025942 Bacteria 24364
85 Ga0207689_10152175 3300025942 Bacteria 1907
86 Ga0207689_10179545 3300025942 Bacteria 1746
87 Ga0207661_10007156 3300025944 Bacteria 7926
88 Ga0207679_10001704 3300025945 Bacteria 13702
89 Ga0207651_10492940 3300025960 Bacteria 1058
90 Ga0207712_10130489 3300025961 Bacteria 1914
91 Ga0207640_10176028 3300025981 Bacteria 1599
92 Ga0207677_10249355 3300026023 Bacteria 1441
93 Ga0207677_10655501 3300026023 Bacteria 927
94 Ga0207703_10194555 3300026035 Bacteria 1798
95 Ga0207639_10321632 3300026041 Bacteria 1374
96 Ga0207708_10003311 3300026075 Bacteria 11856
97 Ga0207708_10133658 3300026075 Bacteria 1941
98 Ga0207648_10055038 3300026089 Bacteria 3474
99 Ga0207648_10071228 3300026089 Bacteria 3029
100 Ga0207648_10755043 3300026089 Unclassified 904
101 Ga0207676_10009887 3300026095 Bacteria 6787
102 Ga0207674_10150475 3300026116 Bacteria 2285
103 Ga0207675_100020960 3300026118 Bacteria 6095
104 Ga0207683_10000838 3300026121 Bacteria 28142
105 Ga0207698_10001250 3300026142 Bacteria 14873
106 Ga0207698_10816370 3300026142 Bacteria 936
107 Ga0209813_10102378 3300027866 Bacteria 976
108 Ga0268266_10128211 3300028379 Bacteria 2267
109 Ga0268265_10041476 3300028380 Bacteria 3407
110 Ga0268264_10399019 3300028381 Bacteria 1321
111 Ga0265325_10009202 3300031241 Bacteria 5783
112 Ga0265325_10091177 3300031241 Bacteria 1503
113 Ga0265327_10255049 3300031251 Bacteria 780
114 Ga0265316_10238904 3300031344 Bacteria 1336
115 Ga0316575_10105298 3300031665 Bacteria 1148
116 Ga0316579_10131538 3300031691 Bacteria 1205
117 Ga0316576_10049386 3300031727 Bacteria 3056
118 Ga0316576_10108188 3300031727 Bacteria 2083
119 Ga0316576_10171506 3300031727 Bacteria 1637
120 Ga0316576_10214792 3300031727 Bacteria 1447
121 Ga0316577_10018910 3300031733 Bacteria 3812
122 Ga0316583_10003629 3300032133 Bacteria 5451
123 Ga0316583_10071426 3300032133 Bacteria 1214
124 Ga0316580_10009173 3300032139 Bacteria 2973
125 Ga0316587_1027062 3300033529 Bacteria 1002
126 Ga0316574_0093914 3300035398 Bacteria 1915
127 Ga0316584_0007953 3300036712 Bacteria 7275
128 Ga0316584_0062095 3300036712 Bacteria 2798
129 Ga0316584_0082178 3300036712 Bacteria 2413
130 Ga0316584_0401641 3300036712 Bacteria 976
131 Ga0395899_0135474 3300037312 Bacteria 1756
132 Ga0395900_0846728 3300037418 Bacteria 840
133 Ga0395898_0802409 3300037466 Bacteria 881
134 Ga0395905_0044001 3300037471 Bacteria 4190
135 Ga0395905_0434845 3300037471 Bacteria 1209
136 Ga0395901_0100794 3300038443 Bacteria 3030
137 Ga0395901_0496626 3300038443 Bacteria 1243
138 Ga0451853_0281349 3300041512 Bacteria 2171
139 Ga0451577_0157683 3300042876 Bacteria 2043
140 Ga0453684_0000193 3300044712 Bacteria 266146
141 Ga0453684_0002064 3300044712 Bacteria 51054
142 Ga0466968_0002141 3300044735 Bacteria 7197
143 Ga0466957_0014910 3300044842 Unclassified 4533
144 Ga0451576_0000698 3300045051 Bacteria 68055
145 Ga0451576_0495678 3300045051 Bacteria 1283
146 Ga0495596_0018526 3300046500 Bacteria 2868
147 Ga0495628_0004322 3300046516 Bacteria 12614
148 Ga0495636_0030303 3300047318 Bacteria 2211
149 Ga0496101_0236176 3300048904 Bacteria 1422
150 Ga0496102_0297324 3300048905 Bacteria 1522
151 Ga0496107_0145580 3300048910 Bacteria 1752
152 Ga0496110_0004858 3300048913 Bacteria 10483
153 Ga0501033_0064385 3300049570 Bacteria 2698
154 Ga0501036_0021086 3300049572 Bacteria 5473
155 Ga0501037_0324133 3300049573 Bacteria 1066
156 Ga0501038_0612810 3300049574 Bacteria 822
157 Ga0501039_0039506 3300049575 Bacteria 3644
158 Ga0501040_0005819 3300049576 Bacteria 7976
159 Ga0501041_0054909 3300049577 Bacteria 2430
160 Ga0501041_0099868 3300049577 Bacteria 1796
161 Ga0501042_0006029 3300049578 Bacteria 7847
162 Ga0501043_0467422 3300049579 Bacteria 946
163 Ga0501046_0192662 3300049580 Bacteria 1520
164 Ga0501048_0011358 3300049582 Bacteria 6641
165 Ga0501068_0009063 3300049584 Bacteria 5553
166 Ga0501071_0004119 3300049587 Bacteria 9189
167 Ga0501073_0009188 3300049589 Bacteria 7290
168 Ga0501074_0023339 3300049590 Bacteria 4498
169 Ga0501074_0201503 3300049590 Bacteria 1418
170 Ga0501074_0499178 3300049590 Bacteria 862
171 Ga0501075_0003720 3300049591 Bacteria 10250
172 Ga0501075_0004535 3300049591 Bacteria 9409
173 Ga0501076_0001847 3300049592 Bacteria 14406
174 Ga0501079_0003156 3300049741 Bacteria 12085
175 Ga0501079_0118539 3300049741 Bacteria 2058
176 Ga0501080_0007975 3300049742 Bacteria 9595
177 Ga0501080_0020056 3300049742 Bacteria 6187
178 Ga0501080_0044181 3300049742 Bacteria 4148
179 Ga0501080_0669353 3300049742 Bacteria 917
180 Ga0501081_0002868 3300049743 Bacteria 10946
181 Ga0501083_0007469 3300049744 Bacteria 7746
182 Ga0501280_022130 3300049776 Bacteria 953
183 Ga0501035_0393981 3300049822 Bacteria 1153
184 Ga0501045_0008999 3300049824 Bacteria 6975
185 nmdc:mga00v17_308554_c1 3300050491 Bacteria 1028
186 nmdc:mga06z11_66700_c1 3300050494 Bacteria 1893
187 nmdc:mga06r32_268923_c1 3300050510 Bacteria 1692
188 Ga0501084_0143340 3300054114 Bacteria 2012
189 Ga0501082_0013348 3300060353 Bacteria 7065
190 Ga0530510_0000257 3300061734 Bacteria 33336
191 2858694462 2858688981 Bacteria 8184122
192 2901305911 2901300506 Bacteria 8463898
193 Ga0068869_100277286
194 Ga0068869_100004242
195 Ga0068869_100140825
196 Ga0068868_100002281
197 Ga0068868_100711842
198 Ga0070660_100219614
199 Ga0070691_10094633
200 Ga0070661_100046220
201 Ga0070669_100063699
202 Ga0070675_100397237
203 Ga0070671_100006639
204 Ga0070671_100813000
205 Ga0070673_100025222
206 Ga0070673_100444688
207 Ga0070688_100616094
208 Ga0070659_100203077
209 Ga0070713_100051115
210 Ga0070708_100584759
211 Ga0068867_100008662
212 Ga0068867_100026104
213 Ga0068867_100145215
214 Ga0070706_100031139
215 Ga0070699_100161623
216 Ga0070697_100548986
217 Ga0070672_100198431
218 Ga0070696_100178479
219 Ga0070665_100031041
220 Ga0070704_100685147
221 Ga0070664_100076717
222 Ga0068852_100000657
223 Ga0068852_100893349
224 Ga0068859_100006120
225 Ga0068858_100277269
226 Ga0068862_100188242
227 Ga0081455_10005886
228 Ga0081538_10008383
229 Ga0081540_1001811
230 Ga0081540_1017143
231 Ga0081539_10021244
232 Ga0075368_10161721
233 Ga0075364_10158828
234 Ga0075367_10126670
235 Ga0097621_100071918
236 Ga0097621_100078999
237 Ga0068871_100007836
238 Ga0075428_100737584
239 Ga0075434_100404636
240 Ga0068865_100077910
241 Ga0068865_100478990
242 Ga0097620_100006120
243 Ga0075435_100872303
244 Ga0111539_10025076
245 Ga0105245_10738374
246 Ga0105245_10797512
247 Ga0114129_11205137
248 Ga0105243_10068765
249 Ga0105241_10190005
250 Ga0105242_10209783
251 Ga0105242_10334134
252 Ga0105248_10008221
253 Ga0105237_10081814
254 Ga0105249_10252397
255 Ga0105249_10645408
256 Ga0105239_11169573
257 Ga0105246_10327722
258 Ga0157378_10067917
259 Ga0163162_10232876
260 Ga0157375_10118370
261 Ga0157375_10193026
262 Ga0157380_10095814
263 Ga0157379_10013724
264 Ga0157376_10040639
265 Ga0209051_1019829
266 Ga0207684_10035640
267 Ga0207649_10206945
268 Ga0207650_10001127
269 Ga0207706_10747326
270 Ga0207686_10077889
271 Ga0207669_10109247
272 Ga0207704_10059159
273 Ga0207704_10172851
274 Ga0207691_10001444
275 Ga0207711_10022480
276 Ga0207689_10001266
277 Ga0207689_10152175
278 Ga0207689_10179545
279 Ga0207661_10007156
280 Ga0207679_10001704
281 Ga0207651_10492940
282 Ga0207712_10130489
283 Ga0207640_10176028
284 Ga0207677_10249355
285 Ga0207677_10655501
286 Ga0207703_10194555
287 Ga0207639_10321632
288 Ga0207708_10003311
289 Ga0207708_10133658
290 Ga0207648_10055038
291 Ga0207648_10071228
292 Ga0207648_10755043
293 Ga0207676_10009887
294 Ga0207674_10150475
295 Ga0207675_100020960
296 Ga0207683_10000838
297 Ga0207698_10001250
298 Ga0207698_10816370
299 Ga0209813_10102378
300 Ga0268266_10128211
301 Ga0268265_10041476
302 Ga0268264_10399019
303 Ga0265325_10009202
304 Ga0265325_10091177
305 Ga0265327_10255049
306 Ga0265316_10238904
307 Ga0316575_10105298
308 Ga0316579_10131538
309 Ga0316576_10049386
310 Ga0316576_10108188
311 Ga0316576_10171506
312 Ga0316576_10214792
313 Ga0316577_10018910
314 Ga0316583_10003629
315 Ga0316583_10071426
316 Ga0316580_10009173
317 Ga0316587_1027062
318 Ga0316574_0093914
319 Ga0316584_0007953
320 Ga0316584_0062095
321 Ga0316584_0082178
322 Ga0316584_0401641
323 Ga0395899_0135474
324 Ga0395900_0846728
325 Ga0395898_0802409
326 Ga0395905_0044001
327 Ga0395905_0434845
328 Ga0395901_0100794
329 Ga0395901_0496626
330 Ga0451853_0281349
331 Ga0451577_0157683
332 Ga0453684_0000193
333 Ga0453684_0002064
334 Ga0466968_0002141
335 Ga0466957_0014910
336 Ga0451576_0000698
337 Ga0451576_0495678
338 Ga0495596_0018526
339 Ga0495628_0004322
340 Ga0495636_0030303
341 Ga0496101_0236176
342 Ga0496102_0297324
343 Ga0496107_0145580
344 Ga0496110_0004858
345 Ga0501033_0064385
346 Ga0501036_0021086
347 Ga0501037_0324133
348 Ga0501038_0612810
349 Ga0501039_0039506
350 Ga0501040_0005819
351 Ga0501041_0054909
352 Ga0501041_0099868
353 Ga0501042_0006029
354 Ga0501043_0467422
355 Ga0501046_0192662
356 Ga0501048_0011358
357 Ga0501068_0009063
358 Ga0501071_0004119
359 Ga0501073_0009188
360 Ga0501074_0023339
361 Ga0501074_0201503
362 Ga0501074_0499178
363 Ga0501075_0003720
364 Ga0501075_0004535
365 Ga0501076_0001847
366 Ga0501079_0003156
367 Ga0501079_0118539
368 Ga0501080_0007975
369 Ga0501080_0020056
370 Ga0501080_0044181
371 Ga0501080_0669353
372 Ga0501081_0002868
373 Ga0501083_0007469
374 Ga0501280_022130
375 Ga0501035_0393981
376 Ga0501045_0008999
377 nmdc:mga00v17_308554_c1
378 nmdc:mga06z11_66700_c1
379 nmdc:mga06r32_268923_c1
380 Ga0501084_0143340
381 Ga0501082_0013348
382 Ga0530510_0000257
383 2858694462
384 2901305911

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

27

223

0.96

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

33

233

0.92

PF08659

KR

KR domain

28

207

0.86

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

29

214

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
3emk-assembly1.cif.gz_A 2.5a crystal structure of glucose/ribitol dehydrogenase from brucella melitensis 0.9449 4 194
3tfo-assembly1.cif.gz_C crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9443 3 186
3tfo-assembly1.cif.gz_D crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9423 4 191
7djs-assembly1.cif.gz_C crystal structure of isopiperitenol dehydrogenase from pseudomonas aeruginosa complexed with nad 0.9392 1 215
5k9z-assembly1.cif.gz_C crystal structure of putative short-chain dehydrogenase/reductase from burkholderia xenovorans lb400 0.9366 3 186
ID Description Score Start End Superfamily
af_K7MUD1_29_120_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.973 4 84 3.40.50.720
af_Q0JBH4_12_100_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.969 4 84 3.40.50.720
af_C6T421_12_106_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9649 4 76 3.40.50.720
af_Q6PKH6_18_219_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9515 4 184 3.40.50.720
af_Q0ISZ5_12_118_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.948 4 84 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A1G1JCT4-F1-model_v4 Short-chain dehydrogenase 0.9884 1 238 GO:0016616
AF-A0A0M9E410-F1-model_v4 Short-chain dehydrogenase 0.9875 1 238 GO:0016616
AF-D0LQI2-F1-model_v4 Short-chain dehydrogenase/reductase SDR 0.9854 6 238 GO:0016616
AF-A0A1G1JCT4-F1-model_v4 Short-chain dehydrogenase 0.9842 1 238 GO:0016616
AF-A0A0M9E410-F1-model_v4 Short-chain dehydrogenase 0.9834 1 238 GO:0016616

Map