F294646

General Info

Members Datasets Scaffolds Average Seq Length
191 157 382 464

Family's Representative Sequence

Representative Sequence 3300048921|Ga0496118_0018621|Ga0496118_0018621_327_1940
Length 531
Sequence LTDPAGCRLSVSDKRADDWFLINACGSVNFFCLGGGSRSGAIRNARPLLEECAMAKLDQGGERLPAQSRLSRRALLRGAQAGAFSLLTARTMPLAHAQNATNEPADYKIRIAPTSLEIAPGKVIRTTAYNGTVPGPALRVKEGKPVRIEVTNDSGYPNLIHSHGLMIPSDQDGATEEGSPIIEPGKSLTYSYVAKPSGTRWYHSHAMAMTNLNKSTYSGEFGFLIVEPAAGDPGSYDREVLLAAHHWDGHWVSLQDIKKGPPPDNGLEVMYHAATLGDRMLGHGDPIRVRQGERVLFRVLNASGNMGISLALPGHRFKVLALDGNPVPNAATVDVLKLDVAERADVIVEMNNPGVWVFGSTDDEDRNMGMGVVVEYANRSGEPTWSAPARSKWDYTLFGRSAPGTTEPDETISLKFEKVPGGRGGYNRWTINGKSWPATNPLFTVTEGRRYRLLLNNNSGDEHPVHLHRHSFEITKVGDKQTSGVIKDTISMPRYSTAEVDFVADDPGPTFFHCHHQDHMDEGFAGLIIYR

Samples

Sample ID Description Type Environment
1 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
44 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
73 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
74 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
75 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
76 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
77 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
78 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
79 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
80 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
81 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
82 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
83 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
84 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
85 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
86 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
87 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
90 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
91 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
92 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
93 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
94 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
95 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
96 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
97 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
98 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
99 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
100 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
101 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
102 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
103 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
104 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
105 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
106 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
107 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
108 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
109 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
110 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
113 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
114 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
115 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
116 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
117 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
118 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
119 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
120 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
121 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
122 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
123 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
124 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
125 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
126 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
127 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
128 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
131 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
132 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
133 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
134 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
135 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
136 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
137 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
138 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
139 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
140 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
141 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
142 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
143 2524023210 Bradyrhizobium sp. Ai1a-2 Isolate Nodule
144 2824600985 Bradyrhizobium sp.HAMBI 2135 Isolate Unclassified
145 2824609381 Bradyrhizobium sp. HAMBI 2134 Isolate Unclassified
146 2876761206 Bradyrhizobium centrolobii BR 10245 Isolate Nodule
147 2888419890 Bradyrhizobium sp. 1(2017) 63S1MB Isolate Unclassified
148 2935675223 Bradyrhizobium sp. LA2.1 Isolate Nodule
149 2935684952 Bradyrhizobium sp. LA3.X Isolate Nodule
150 2935694250 Bradyrhizobium sp. LA6.1 Isolate Nodule
151 2935713505 Bradyrhizobium sp. LA6.12 Isolate Nodule
152 2935722832 Bradyrhizobium sp. LA6.3 Isolate Nodule
153 2935732158 Bradyrhizobium sp. LA6.4 Isolate Nodule
154 2935741537 Bradyrhizobium sp. LA6.7 Isolate Nodule
155 2935750917 Bradyrhizobium sp. LA6.8 Isolate Nodule
156 2940556831 Bradyrhizobium sp. LA8.1 Isolate Nodule
157 8056681323 Bradyrhizobium cenepequi CNPSo 4026 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 90.58
Metatranscriptomes 1.57
Isolates 7.85

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.81
Nodule 6.28
Rhizoplane 8.38
Rhizosphere 72.25
Stem 0
Stem Tuber 0
Unclassified 7.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496118_0018621 3300048921 Bacteria 6249
2 rootH2_10114734 3300003320 Bacteria 2960
3 rootL2_10049879 3300003322 Bacteria 4758
4 Ga0070658_10039433 3300005327 Unclassified 3810
5 Ga0070690_100035360 3300005330 Bacteria 3135
6 Ga0070680_100081216 3300005336 Bacteria 2675
7 Ga0070689_100016241 3300005340 Bacteria 5444
8 Ga0070675_100021777 3300005354 Bacteria 5120
9 Ga0070688_100049857 3300005365 Bacteria 2607
10 Ga0070714_100001296 3300005435 Bacteria 18082
11 Ga0070713_100141022 3300005436 Unclassified 2135
12 Ga0070710_10023199 3300005437 Bacteria 3258
13 Ga0070711_100004499 3300005439 Bacteria 8238
14 Ga0070711_100175618 3300005439 Unclassified 1636
15 Ga0070708_100135768 3300005445 Bacteria 2278
16 Ga0070662_100034626 3300005457 Bacteria 3562
17 Ga0070706_100095715 3300005467 Bacteria 2756
18 Ga0070684_100073883 3300005535 Bacteria 3005
19 Ga0068855_100031344 3300005563 Bacteria 6349
20 Ga0068852_100022868 3300005616 Bacteria 5022
21 Ga0068859_100096712 3300005617 Bacteria 3005
22 Ga0068864_100014660 3300005618 Bacteria 6511
23 Ga0068863_100025390 3300005841 Bacteria 5649
24 Ga0068858_100015026 3300005842 Bacteria 7283
25 Ga0081455_10002130 3300005937 Bacteria 23594
26 Ga0081455_10003735 3300005937 Bacteria 17394
27 Ga0081540_1018907 3300005983 Bacteria 4208
28 Ga0075365_10036646 3300006038 Bacteria 3179
29 Ga0097621_100015356 3300006237 Bacteria 5760
30 Ga0075428_100204295 3300006844 Bacteria 2135
31 Ga0075430_100045443 3300006846 Bacteria 3710
32 Ga0075431_100191005 3300006847 Unclassified 2098
33 Ga0068865_100023709 3300006881 Bacteria 4021
34 Ga0097620_100096716 3300006931 Bacteria 3005
35 Ga0105240_10271149 3300009093 Bacteria 1954
36 Ga0111539_10048331 3300009094 Bacteria 5080
37 Ga0111539_10097867 3300009094 Bacteria 3447
38 Ga0111539_10169568 3300009094 Bacteria 2550
39 Ga0105245_10028447 3300009098 Bacteria 4931
40 Ga0105247_10010783 3300009101 Bacteria 5519
41 Ga0105243_10050965 3300009148 Bacteria 3272
42 Ga0105237_10284325 3300009545 Bacteria 1657
43 Ga0157374_10000387 3300013296 Bacteria 40397
44 Ga0163162_10013466 3300013306 Bacteria 7983
45 Ga0157372_10029457 3300013307 Bacteria 5995
46 Ga0163163_10001209 3300014325 Bacteria 21835
47 Ga0182008_10022715 3300014497 Bacteria 3211
48 Ga0157379_10031816 3300014968 Bacteria 4700
49 Ga0157376_10011610 3300014969 Bacteria 6503
50 Ga0209677_101629 3300025253 Bacteria 9462
51 Ga0207688_10007864 3300025901 Bacteria 5803
52 Ga0207647_10093667 3300025904 Bacteria 1790
53 Ga0207645_10013748 3300025907 Bacteria 5434
54 Ga0207643_10003275 3300025908 Bacteria 8747
55 Ga0207705_10009874 3300025909 Bacteria 6951
56 Ga0207684_10067199 3300025910 Bacteria 3046
57 Ga0207663_10196712 3300025916 Unclassified 1451
58 Ga0207662_10002192 3300025918 Bacteria 9730
59 Ga0207659_10008290 3300025926 Bacteria 6443
60 Ga0207700_10180113 3300025928 Unclassified 1769
61 Ga0207664_10001865 3300025929 Bacteria 13873
62 Ga0207664_10003594 3300025929 Bacteria 10370
63 Ga0207644_10009528 3300025931 Bacteria 6379
64 Ga0207644_10012022 3300025931 Bacteria 5741
65 Ga0207690_10147756 3300025932 Bacteria 1739
66 Ga0207706_10034881 3300025933 Bacteria 4476
67 Ga0207711_10040269 3300025941 Bacteria 3975
68 Ga0207689_10041440 3300025942 Bacteria 3810
69 Ga0207658_10225701 3300025986 Bacteria 1578
70 Ga0207639_10059155 3300026041 Bacteria 2951
71 Ga0207641_10055898 3300026088 Bacteria 3352
72 Ga0207676_10052937 3300026095 Bacteria 3175
73 Ga0207674_10167765 3300026116 Bacteria 2149
74 Ga0207675_100042791 3300026118 Bacteria 4229
75 Ga0207683_10021522 3300026121 Bacteria 5523
76 Ga0268266_10006122 3300028379 Bacteria 11077
77 Ga0268264_10018205 3300028381 Bacteria 5746
78 Ga0307511_10072859 3300030521 Bacteria 2491
79 Ga0265762_1002067 3300030760 Bacteria 3659
80 Ga0265760_10001321 3300031090 Bacteria 7264
81 Ga0265760_10028581 3300031090 Bacteria 1637
82 Ga0265320_10032856 3300031240 Bacteria 2653
83 Ga0265325_10001628 3300031241 Bacteria 15648
84 Ga0265331_10020751 3300031250 Bacteria 3368
85 Ga0307509_10001966 3300031507 Bacteria 33940
86 Ga0265342_10029582 3300031712 Bacteria 3400
87 Ga0373943_0038859 3300035170 Bacteria 2290
88 Ga0373943_0106856 3300035170 Bacteria 1471
89 Ga0373946_0002240 3300035171 Bacteria 6828
90 Ga0373935_0007842 3300035692 Bacteria 6403
91 Ga0373935_0053107 3300035692 Bacteria 2578
92 Ga0373927_0076221 3300035695 Unclassified 2172
93 Ga0373933_0051575 3300035724 Bacteria 2460
94 Ga0373947_0014195 3300035725 Bacteria 4568
95 Ga0373947_0057237 3300035725 Bacteria 2358
96 Ga0373947_0097299 3300035725 Bacteria 1844
97 Ga0373937_0006822 3300036401 Bacteria 9852
98 Ga0373925_0007697 3300037068 Bacteria 7847
99 Ga0395905_0035487 3300037471 Bacteria 4683
100 Ga0436364_1558480 3300037853 Unclassified 3078
101 Ga0436360_0124889 3300039438 Bacteria 5631
102 Ga0436360_0579052 3300039438 Bacteria 10454
103 Ga0436360_0660830 3300039438 Bacteria 7892
104 Ga0436361_0091170 3300039447 Bacteria 13989
105 Ga0436361_0302313 3300039447 Bacteria 8765
106 Ga0436361_0381218 3300039447 Bacteria 12158
107 Ga0436361_0411805 3300039447 Unclassified 1601
108 Ga0436362_0945948 3300039453 Unclassified 1921
109 Ga0466959_0120757 3300045049 Unclassified 1863
110 Ga0466958_0188433 3300045836 Unclassified 1311
111 Ga0495603_0011865 3300046455 Bacteria 5273
112 Ga0495603_0031745 3300046455 Bacteria 3180
113 Ga0495629_0145979 3300046459 Bacteria 1645
114 Ga0495638_0018477 3300046460 Bacteria 4629
115 Ga0495580_0049300 3300046472 Bacteria 2980
116 Ga0495582_0027585 3300046473 Bacteria 3114
117 Ga0495582_0051921 3300046473 Bacteria 2261
118 Ga0495584_0055841 3300046491 Bacteria 1987
119 Ga0495594_0001128 3300046499 Bacteria 13934
120 Ga0495594_0034993 3300046499 Bacteria 2735
121 Ga0495643_0043702 3300046522 Bacteria 2437
122 Ga0495644_0000226 3300046523 Bacteria 26695
123 Ga0495652_0059126 3300046529 Unclassified 3244
124 Ga0495652_0153874 3300046529 Bacteria 1793
125 Ga0495640_0068780 3300046533 Bacteria 2382
126 Ga0495587_0158910 3300046536 Bacteria 1287
127 Ga0495659_0027526 3300046664 Bacteria 1962
128 Ga0495588_0051329 3300046674 Bacteria 2124
129 Ga0495669_0006047 3300046684 Bacteria 5051
130 Ga0495624_0029244 3300046690 Bacteria 3596
131 Ga0495674_0021645 3300047319 Bacteria 5944
132 Ga0495674_0080355 3300047319 Bacteria 2798
133 Ga0495672_0014645 3300047320 Bacteria 5358
134 Ga0495672_0045058 3300047320 Bacteria 2643
135 Ga0495676_0040207 3300047321 Bacteria 3862
136 Ga0495676_0042366 3300047321 Bacteria 3738
137 Ga0496100_0032890 3300048903 Bacteria 3239
138 Ga0496102_0340443 3300048905 Bacteria 1412
139 Ga0496103_0002124 3300048906 Bacteria 12611
140 Ga0496103_0002783 3300048906 Bacteria 10886
141 Ga0496104_0002700 3300048907 Bacteria 15272
142 Ga0496104_0030439 3300048907 Bacteria 5015
143 Ga0496105_0010826 3300048908 Bacteria 7181
144 Ga0496105_0044729 3300048908 Bacteria 3652
145 Ga0496106_0031090 3300048909 Bacteria 3978
146 Ga0496109_0014797 3300048912 Bacteria 6788
147 Ga0496109_0039675 3300048912 Bacteria 4262
148 Ga0496111_0011306 3300048914 Bacteria 6008
149 Ga0496113_0001058 3300048916 Bacteria 14850
150 Ga0496114_0087764 3300048917 Bacteria 2638
151 Ga0496114_0108154 3300048917 Bacteria 2380
152 Ga0496115_0094087 3300048918 Bacteria 2451
153 Ga0496121_0039174 3300048924 Bacteria 4182
154 Ga0496121_0111380 3300048924 Bacteria 2087
155 Ga0496122_0062411 3300048925 Bacteria 2728
156 Ga0501047_0205458 3300049581 Bacteria 1829
157 nmdc:mga0yw44_104748_c1 3300050492 Bacteria 1806
158 nmdc:mga0yw44_46353_c1 3300050492 Bacteria 2610
159 nmdc:mga06r32_249675_c1 3300050510 Bacteria 1762
160 nmdc:mga0n895_22773_c1 3300050512 Bacteria 5877
161 nmdc:mga0a205_19763_c1 3300050515 Bacteria 6356
162 Ga0495601_0004980 3300053077 Bacteria 7711
163 Ga0495601_0040006 3300053077 Bacteria 2936
164 Ga0495601_0082644 3300053077 Bacteria 2062
165 Ga0495612_0010493 3300053078 Unclassified 3742
166 Ga0495619_0002790 3300053085 Bacteria 11402
167 Ga0495619_0039995 3300053085 Bacteria 3063
168 Ga0500578_0058599 3300053086 Bacteria 2461
169 Ga0500651_0010126 3300053093 Bacteria 5636
170 Ga0500641_0069574 3300053096 Bacteria 1479
171 Ga0500595_000176 3300053119 Bacteria 42910
172 Ga0500642_0043558 3300053130 Bacteria 1950
173 Ga0500616_0000225 3300053153 Bacteria 88286
174 Ga0500616_0024146 3300053153 Bacteria 3383
175 Ga0500622_0000277 3300053156 Bacteria 52401
176 Ga0500637_0003598 3300053178 Bacteria 7194
177 2524464132 2524023210 Bacteria 9029266
178 2824602243 2824600985 Bacteria 8488197
179 2824610231 2824609381 Bacteria 8672835
180 2876766996 2876761206 Bacteria 10111113
181 2888423432 2888419890 Bacteria 7857137
182 2935680054 2935675223 Bacteria 9928132
183 2935693867 2935684952 Bacteria 9590419
184 2935700693 2935694250 Bacteria 9291695
185 2935721989 2935713505 Bacteria 9608509
186 2935731366 2935722832 Bacteria 9608746
187 2935741066 2935732158 Bacteria 9706831
188 2935750442 2935741537 Bacteria 9707219
189 2935759697 2935750917 Bacteria 9590372
190 2940565602 2940556831 Bacteria 9590747
191 8056687479 8056681323 Bacteria 8472857
192 Ga0496118_0018621
193 rootH2_10114734
194 rootL2_10049879
195 Ga0070658_10039433
196 Ga0070690_100035360
197 Ga0070680_100081216
198 Ga0070689_100016241
199 Ga0070675_100021777
200 Ga0070688_100049857
201 Ga0070714_100001296
202 Ga0070713_100141022
203 Ga0070710_10023199
204 Ga0070711_100004499
205 Ga0070711_100175618
206 Ga0070708_100135768
207 Ga0070662_100034626
208 Ga0070706_100095715
209 Ga0070684_100073883
210 Ga0068855_100031344
211 Ga0068852_100022868
212 Ga0068859_100096712
213 Ga0068864_100014660
214 Ga0068863_100025390
215 Ga0068858_100015026
216 Ga0081455_10002130
217 Ga0081455_10003735
218 Ga0081540_1018907
219 Ga0075365_10036646
220 Ga0097621_100015356
221 Ga0075428_100204295
222 Ga0075430_100045443
223 Ga0075431_100191005
224 Ga0068865_100023709
225 Ga0097620_100096716
226 Ga0105240_10271149
227 Ga0111539_10048331
228 Ga0111539_10097867
229 Ga0111539_10169568
230 Ga0105245_10028447
231 Ga0105247_10010783
232 Ga0105243_10050965
233 Ga0105237_10284325
234 Ga0157374_10000387
235 Ga0163162_10013466
236 Ga0157372_10029457
237 Ga0163163_10001209
238 Ga0182008_10022715
239 Ga0157379_10031816
240 Ga0157376_10011610
241 Ga0209677_101629
242 Ga0207688_10007864
243 Ga0207647_10093667
244 Ga0207645_10013748
245 Ga0207643_10003275
246 Ga0207705_10009874
247 Ga0207684_10067199
248 Ga0207663_10196712
249 Ga0207662_10002192
250 Ga0207659_10008290
251 Ga0207700_10180113
252 Ga0207664_10001865
253 Ga0207664_10003594
254 Ga0207644_10009528
255 Ga0207644_10012022
256 Ga0207690_10147756
257 Ga0207706_10034881
258 Ga0207711_10040269
259 Ga0207689_10041440
260 Ga0207658_10225701
261 Ga0207639_10059155
262 Ga0207641_10055898
263 Ga0207676_10052937
264 Ga0207674_10167765
265 Ga0207675_100042791
266 Ga0207683_10021522
267 Ga0268266_10006122
268 Ga0268264_10018205
269 Ga0307511_10072859
270 Ga0265762_1002067
271 Ga0265760_10001321
272 Ga0265760_10028581
273 Ga0265320_10032856
274 Ga0265325_10001628
275 Ga0265331_10020751
276 Ga0307509_10001966
277 Ga0265342_10029582
278 Ga0373943_0038859
279 Ga0373943_0106856
280 Ga0373946_0002240
281 Ga0373935_0007842
282 Ga0373935_0053107
283 Ga0373927_0076221
284 Ga0373933_0051575
285 Ga0373947_0014195
286 Ga0373947_0057237
287 Ga0373947_0097299
288 Ga0373937_0006822
289 Ga0373925_0007697
290 Ga0395905_0035487
291 Ga0436364_1558480
292 Ga0436360_0124889
293 Ga0436360_0579052
294 Ga0436360_0660830
295 Ga0436361_0091170
296 Ga0436361_0302313
297 Ga0436361_0381218
298 Ga0436361_0411805
299 Ga0436362_0945948
300 Ga0466959_0120757
301 Ga0466958_0188433
302 Ga0495603_0011865
303 Ga0495603_0031745
304 Ga0495629_0145979
305 Ga0495638_0018477
306 Ga0495580_0049300
307 Ga0495582_0027585
308 Ga0495582_0051921
309 Ga0495584_0055841
310 Ga0495594_0001128
311 Ga0495594_0034993
312 Ga0495643_0043702
313 Ga0495644_0000226
314 Ga0495652_0059126
315 Ga0495652_0153874
316 Ga0495640_0068780
317 Ga0495587_0158910
318 Ga0495659_0027526
319 Ga0495588_0051329
320 Ga0495669_0006047
321 Ga0495624_0029244
322 Ga0495674_0021645
323 Ga0495674_0080355
324 Ga0495672_0014645
325 Ga0495672_0045058
326 Ga0495676_0040207
327 Ga0495676_0042366
328 Ga0496100_0032890
329 Ga0496102_0340443
330 Ga0496103_0002124
331 Ga0496103_0002783
332 Ga0496104_0002700
333 Ga0496104_0030439
334 Ga0496105_0010826
335 Ga0496105_0044729
336 Ga0496106_0031090
337 Ga0496109_0014797
338 Ga0496109_0039675
339 Ga0496111_0011306
340 Ga0496113_0001058
341 Ga0496114_0087764
342 Ga0496114_0108154
343 Ga0496115_0094087
344 Ga0496121_0039174
345 Ga0496121_0111380
346 Ga0496122_0062411
347 Ga0501047_0205458
348 nmdc:mga0yw44_104748_c1
349 nmdc:mga0yw44_46353_c1
350 nmdc:mga06r32_249675_c1
351 nmdc:mga0n895_22773_c1
352 nmdc:mga0a205_19763_c1
353 Ga0495601_0004980
354 Ga0495601_0040006
355 Ga0495601_0082644
356 Ga0495612_0010493
357 Ga0495619_0002790
358 Ga0495619_0039995
359 Ga0500578_0058599
360 Ga0500651_0010126
361 Ga0500641_0069574
362 Ga0500595_000176
363 Ga0500642_0043558
364 Ga0500616_0000225
365 Ga0500616_0024146
366 Ga0500622_0000277
367 Ga0500637_0003598
368 2524464132
369 2824602243
370 2824610231
371 2876766996
372 2888423432
373 2935680054
374 2935693867
375 2935700693
376 2935721989
377 2935731366
378 2935741066
379 2935750442
380 2935759697
381 2940565602
382 8056687479

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07731

Cu-oxidase_2

Multicopper oxidase

411

531

0.93

PF00394

Cu-oxidase

Multicopper oxidase

264

377

0.91

PF07732

Cu-oxidase_3

Multicopper oxidase

111

231

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3gdc-assembly1.cif.gz_B crystal structure of multicopper oxidase 0.8685 54 326
1zpu-assembly1.cif.gz_A crystal structure of fet3p, a multicopper oxidase that functions in iron import 0.8473 53 477
3g5w-assembly2.cif.gz_F crystal structure of blue copper oxidase from nitrosomonas europaea 0.8396 53 326
6the-assembly1.cif.gz_A crystal structure of core domain of four-domain heme-cupredoxin-cu nitrite reductase from bradyrhizobium sp. ors 375 0.834 53 327
2qt6-assembly2.cif.gz_B crystal structure determination of a blue laccase from lentinus tigrinus 0.8266 54 478
ID Description Score Start End Superfamily
af_I6WZK7_37_181_2.60.40.420 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.9391 54 174 2.60.40.420
3gdcA01 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.903 54 178 2.60.40.420
af_A0A0B4KF30_585_779_2.60.40.420 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.8986 390 480 2.60.40.420
6evgA01 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.8985 54 173 2.60.40.420
4bdvA04 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.8957 376 480 2.60.40.420
ID Description Score Start End GO Terms
AF-A0A7W8MY99-F1-model_v4 deleted 0.9831 48 480
AF-A0A1B2EVN6-F1-model_v4 Plastocyanin-like domain-containing protein 0.9746 391 480 GO:0005507
GO:0016491
AF-A0A7G1I2D5-F1-model_v4 Multicopper oxidase family protein 0.9716 247 479 GO:0005507
GO:0016491
AF-A0A2U3K3X0-F1-model_v4 Laccase 0.9681 61 479 GO:0005507
GO:0016491
AF-A0A7W8MY99-F1-model_v4 deleted 0.9676 48 480

Map