F294234

General Info

Members Datasets Scaffolds Average Seq Length
191 151 382 404

Family's Representative Sequence

Representative Sequence 3300031456|Ga0307513_10000788|Ga0307513_1000078831
Length 436
Sequence MPSRAAAGSFDLVPATSVDLYQVEGYEARARVIASVTDTFLATADGVRHAAYRSLTTAGPIHWQRFPSGATGWLVTGYEAARSALSDPRLAKGGPGDGPYANDIRPDVAAAIDSHLLALDPPDHTRLRRLLTAAFTRRRSELLAPRIQELTDNLLDAMTERFATSDEPVDLITAFAYPLPIAVICELLGVPEDDRADFRAWTGPLVAGGMAGFEAYSNAATALVDYVHELLARKRREPAEDLLSALVAVRDQGDRLTENELTAMVYLLLIAGHETTVNLIANGIRALLMHPDQLAVLRAEPDRMAAAVEELLRYDGPLQSAIPMVTVAPLEIGGAQLDAGELVVISLLAANRDPARHPEADRLDVTRPETAHLAFGHGIHRCVGAPLAQVEGRIAIGSLIRRFERLELAVPATDLARTPGLLMNSLVTLPVRLSAE

Samples

Sample ID Description Type Environment
1 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
35 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
36 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
37 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
38 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
39 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
41 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
42 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
54 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
55 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
59 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
85 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
88 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
89 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
90 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
91 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
92 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
93 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
94 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
95 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
96 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
97 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
98 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
99 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
100 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
101 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
102 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
103 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
104 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
105 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
106 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
107 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
108 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
109 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
110 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
111 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
112 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
113 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
119 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
120 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
121 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
122 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
123 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
124 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
125 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
126 3300049667 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control Metagenome Rhizosphere
127 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
128 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
129 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
130 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
131 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
132 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
133 3300049708 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control Metagenome Rhizosphere
134 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
135 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
137 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
138 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
139 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
140 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
141 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
144 2547132424 Nocardia nova SH22a Isolate Unclassified
145 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
146 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
147 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
148 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
149 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
150 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
151 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.81
Metatranscriptomes 0
Isolates 4.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.57
Nodule 0
Rhizoplane 6.81
Rhizosphere 88.48
Stem 0
Stem Tuber 0
Unclassified 10.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307513_10000788 3300031456 Bacteria 46013
2 JGI25407J50210_10001229 3300003373 Bacteria 5721
3 Ga0065715_10103461 3300005293 Bacteria 3032
4 Ga0070658_10122834 3300005327 Bacteria 2159
5 Ga0070683_100055157 3300005329 Unclassified 3687
6 Ga0070670_100295558 3300005331 Unclassified 1416
7 Ga0068869_100037446 3300005334 Bacteria 3449
8 Ga0068868_100080247 3300005338 Bacteria 2614
9 Ga0070689_100140946 3300005340 Bacteria 1939
10 Ga0070668_100004082 3300005347 Bacteria 10812
11 Ga0070669_100243081 3300005353 Bacteria 1431
12 Ga0070659_100020981 3300005366 Bacteria 4968
13 Ga0070659_100181278 3300005366 Bacteria 1729
14 Ga0070714_100361698 3300005435 Bacteria 1364
15 Ga0070700_100013576 3300005441 Bacteria 4578
16 Ga0070708_100192848 3300005445 Bacteria 1906
17 Ga0070663_100014335 3300005455 Bacteria 5086
18 Ga0070685_10058905 3300005466 Bacteria 2240
19 Ga0070698_100185940 3300005471 Bacteria 2015
20 Ga0070684_100043243 3300005535 Unclassified 3889
21 Ga0068853_100064370 3300005539 Bacteria 3179
22 Ga0070686_100063664 3300005544 Bacteria 2390
23 Ga0070665_100063596 3300005548 Bacteria 3700
24 Ga0070664_100168769 3300005564 Bacteria 1940
25 Ga0068857_100047959 3300005577 Bacteria 3793
26 Ga0068856_100119686 3300005614 Bacteria 2634
27 Ga0070702_100039010 3300005615 Bacteria 2649
28 Ga0068852_100121842 3300005616 Unclassified 2389
29 Ga0068852_100127081 3300005616 Bacteria 2343
30 Ga0068859_100272878 3300005617 Bacteria 1783
31 Ga0068859_100278207 3300005617 Bacteria 1766
32 Ga0068864_100004076 3300005618 Bacteria 11996
33 Ga0068864_100007523 3300005618 Bacteria 8973
34 Ga0068870_10024689 3300005840 Bacteria 2976
35 Ga0068858_100209080 3300005842 Bacteria 1847
36 Ga0068860_100001088 3300005843 Bacteria 29946
37 Ga0068860_100272728 3300005843 Bacteria 1651
38 Ga0068862_100078310 3300005844 Bacteria 2864
39 Ga0081455_10003266 3300005937 Bacteria 18760
40 Ga0081538_10000798 3300005981 Bacteria 34203
41 Ga0081539_10010513 3300005985 Bacteria 7503
42 Ga0081539_10011422 3300005985 Bacteria 7019
43 Ga0070717_10265775 3300006028 Unclassified 1518
44 Ga0070712_100294481 3300006175 Bacteria 1311
45 Ga0097621_100025657 3300006237 Unclassified 4613
46 Ga0075428_100000242 3300006844 Bacteria 53310
47 Ga0075430_100116408 3300006846 Bacteria 2227
48 Ga0075431_100015075 3300006847 Bacteria 7827
49 Ga0075431_100024890 3300006847 Bacteria 6138
50 Ga0097620_100272875 3300006931 Bacteria 1783
51 Ga0097620_100278220 3300006931 Bacteria 1766
52 Ga0111539_10002446 3300009094 Bacteria 24690
53 Ga0111539_10069229 3300009094 Bacteria 4167
54 Ga0105245_10075562 3300009098 Unclassified 3068
55 Ga0114129_10023946 3300009147 Bacteria 8652
56 Ga0114129_10423088 3300009147 Bacteria 1751
57 Ga0105243_10042579 3300009148 Bacteria 3555
58 Ga0105248_10001537 3300009177 Bacteria 25681
59 Ga0105248_10009450 3300009177 Bacteria 10736
60 Ga0105248_10077519 3300009177 Bacteria 3736
61 Ga0105237_10084235 3300009545 Bacteria 3170
62 Ga0105237_10223133 3300009545 Bacteria 1885
63 Ga0105238_10080586 3300009551 Bacteria 3245
64 Ga0105249_10025430 3300009553 Bacteria 5330
65 Ga0105239_10030043 3300010375 Bacteria 5976
66 Ga0105239_10132771 3300010375 Bacteria 2770
67 Ga0105246_10035514 3300011119 Bacteria 3332
68 Ga0157369_10190102 3300013105 Unclassified 2158
69 Ga0157378_10000234 3300013297 Bacteria 54066
70 Ga0157378_10001834 3300013297 Bacteria 19075
71 Ga0157375_10017577 3300013308 Bacteria 6457
72 Ga0163163_10002102 3300014325 Bacteria 16816
73 Ga0157377_10022329 3300014745 Bacteria 3339
74 Ga0207688_10009451 3300025901 Bacteria 5307
75 Ga0207680_10044174 3300025903 Bacteria 2619
76 Ga0207645_10012756 3300025907 Bacteria 5697
77 Ga0207643_10006492 3300025908 Bacteria 6265
78 Ga0207693_10070547 3300025915 Unclassified 2734
79 Ga0207693_10080062 3300025915 Bacteria 2557
80 Ga0207693_10245604 3300025915 Bacteria 1405
81 Ga0207662_10022557 3300025918 Bacteria 3610
82 Ga0207646_10052620 3300025922 Bacteria 3644
83 Ga0207659_10135449 3300025926 Bacteria 1906
84 Ga0207687_10049905 3300025927 Bacteria 2911
85 Ga0207664_10151806 3300025929 Bacteria 1968
86 Ga0207670_10023845 3300025936 Bacteria 3815
87 Ga0207665_10037268 3300025939 Unclassified 3236
88 Ga0207711_10005577 3300025941 Bacteria 10643
89 Ga0207689_10007599 3300025942 Bacteria 9495
90 Ga0207689_10102963 3300025942 Bacteria 2346
91 Ga0207661_10007995 3300025944 Bacteria 7541
92 Ga0207679_10071726 3300025945 Bacteria 2614
93 Ga0207668_10003635 3300025972 Bacteria 9061
94 Ga0207658_10057986 3300025986 Bacteria 2880
95 Ga0207677_10006416 3300026023 Bacteria 6451
96 Ga0207703_10204046 3300026035 Bacteria 1758
97 Ga0207678_10016478 3300026067 Bacteria 6490
98 Ga0207678_10032364 3300026067 Bacteria 4557
99 Ga0207676_10030221 3300026095 Bacteria 4064
100 Ga0207676_10131244 3300026095 Bacteria 2130
101 Ga0207674_10033645 3300026116 Bacteria 5365
102 Ga0207674_10196116 3300026116 Bacteria 1969
103 Ga0207675_100004063 3300026118 Bacteria 14170
104 Ga0207698_10036478 3300026142 Bacteria 3609
105 Ga0207428_10003966 3300027907 Bacteria 14197
106 Ga0268265_10008410 3300028380 Bacteria 6966
107 Ga0268265_10061910 3300028380 Bacteria 2873
108 Ga0268264_10002340 3300028381 Bacteria 16754
109 Ga0307515_10010077 3300028794 Bacteria 18175
110 Ga0307515_10186147 3300028794 Bacteria 2005
111 Ga0307408_100030778 3300031548 Bacteria 3729
112 Ga0307405_10012627 3300031731 Bacteria 4482
113 Ga0307405_10031183 3300031731 Bacteria 3135
114 Ga0307406_10017088 3300031901 Bacteria 4223
115 Ga0307416_100112341 3300032002 Bacteria 2404
116 Ga0307414_10005618 3300032004 Bacteria 6916
117 Ga0307415_100000420 3300032126 Bacteria 18169
118 Ga0307415_100065649 3300032126 Bacteria 2529
119 Ga0307415_100197308 3300032126 Bacteria 1594
120 Ga0373942_0000402 3300035207 Bacteria 12042
121 Ga0373962_0000588 3300035242 Bacteria 8216
122 Ga0373924_0000003 3300035410 Bacteria 72690
123 Ga0373935_0164171 3300035692 Unclassified 1516
124 Ga0436365_0843074 3300039437 Bacteria 2484
125 Ga0466972_0014683 3300044658 Bacteria 3920
126 Ga0466965_0095306 3300044683 Bacteria 1517
127 Ga0466968_0002098 3300044735 Bacteria 7259
128 Ga0466968_0060426 3300044735 Bacteria 1634
129 Ga0466967_0009878 3300045976 Bacteria 7117
130 Ga0495623_0016662 3300046679 Bacteria 4747
131 Ga0496100_0069141 3300048903 Unclassified 2351
132 Ga0496102_0190753 3300048905 Bacteria 1931
133 Ga0496108_0000034 3300048911 Bacteria 157614
134 Ga0496108_0044960 3300048911 Bacteria 3687
135 Ga0496108_0053840 3300048911 Bacteria 3376
136 Ga0496108_0083528 3300048911 Bacteria 2709
137 Ga0496109_0002923 3300048912 Bacteria 14283
138 Ga0496109_0185032 3300048912 Bacteria 1957
139 Ga0496110_0006870 3300048913 Bacteria 9046
140 Ga0496111_0022286 3300048914 Bacteria 4432
141 Ga0496112_0193022 3300048915 Bacteria 1997
142 Ga0496112_0255338 3300048915 Unclassified 1703
143 Ga0501292_007873 3300049515 Unclassified 1547
144 Ga0501298_007403 3300049521 Bacteria 1819
145 Ga0501036_0016246 3300049572 Bacteria 6217
146 Ga0501038_0228517 3300049574 Bacteria 1482
147 Ga0501040_0075638 3300049576 Bacteria 2327
148 Ga0501041_0075009 3300049577 Bacteria 2079
149 Ga0501048_0033468 3300049582 Unclassified 3713
150 Ga0501076_0075559 3300049592 Unclassified 2701
151 Ga0501077_0088694 3300049593 Bacteria 1960
152 Ga0501077_0113788 3300049593 Bacteria 1716
153 Ga0501198_003440 3300049649 Bacteria 2163
154 Ga0501202_000631 3300049652 Bacteria 5167
155 Ga0501216_001243 3300049660 Bacteria 3394
156 Ga0501216_003413 3300049660 Bacteria 2313
157 Ga0501217_007597 3300049661 Bacteria 2327
158 Ga0501224_001324 3300049664 Bacteria 3273
159 Ga0501224_007020 3300049664 Unclassified 1638
160 Ga0501227_000322 3300049665 Bacteria 10031
161 Ga0501230_002290 3300049667 Bacteria 2426
162 Ga0501233_004859 3300049668 Bacteria 2482
163 Ga0501235_004645 3300049669 Bacteria 2969
164 Ga0501242_005048 3300049674 Unclassified 1476
165 Ga0501249_014362 3300049679 Bacteria 1687
166 Ga0501229_001560 3300049706 Bacteria 2681
167 Ga0501234_000496 3300049707 Bacteria 6026
168 Ga0501245_006874 3300049708 Bacteria 1599
169 Ga0501283_006740 3300049779 Unclassified 1617
170 Ga0501045_0043730 3300049824 Bacteria 3262
171 Ga0501226_002291 3300049853 Bacteria 2350
172 nmdc:mga05p37_520064_c1 3300050507 Bacteria 1361
173 nmdc:mga05p37_58158_c1 3300050507 Bacteria 4761
174 nmdc:mga06r32_10266_c1 3300050510 Bacteria 8448
175 nmdc:mga06r32_19917_c1 3300050510 Bacteria 6167
176 nmdc:mga06r32_56769_c1 3300050510 Bacteria 3759
177 nmdc:mga08y16_1041_c1 3300050511 Bacteria 27179
178 nmdc:mga08y16_28740_c1 3300050511 Bacteria 5860
179 Ga0500555_001907 3300053103 Bacteria 6188
180 Ga0500616_0000752 3300053153 Bacteria 37274
181 Ga0500616_0002281 3300053153 Bacteria 16248
182 Ga0501084_0050274 3300054114 Bacteria 3489
183 Ga0501082_0093702 3300060353 Unclassified 2595
184 2548692272 2547132424 Bacteria 8348532
185 2793976826 2791355406 Bacteria 11364898
186 8001787118 8001781756 Bacteria 9586736
187 8047898017 8047893842 Bacteria 11723082
188 8048360876 8048356638 Bacteria 11044339
189 8048374980 8048369669 Bacteria 11666822
190 8048383226 8048379754 Bacteria 11877923
191 8053952339 8053945823 Bacteria 8962862
192 Ga0307513_10000788
193 JGI25407J50210_10001229
194 Ga0065715_10103461
195 Ga0070658_10122834
196 Ga0070683_100055157
197 Ga0070670_100295558
198 Ga0068869_100037446
199 Ga0068868_100080247
200 Ga0070689_100140946
201 Ga0070668_100004082
202 Ga0070669_100243081
203 Ga0070659_100020981
204 Ga0070659_100181278
205 Ga0070714_100361698
206 Ga0070700_100013576
207 Ga0070708_100192848
208 Ga0070663_100014335
209 Ga0070685_10058905
210 Ga0070698_100185940
211 Ga0070684_100043243
212 Ga0068853_100064370
213 Ga0070686_100063664
214 Ga0070665_100063596
215 Ga0070664_100168769
216 Ga0068857_100047959
217 Ga0068856_100119686
218 Ga0070702_100039010
219 Ga0068852_100121842
220 Ga0068852_100127081
221 Ga0068859_100272878
222 Ga0068859_100278207
223 Ga0068864_100004076
224 Ga0068864_100007523
225 Ga0068870_10024689
226 Ga0068858_100209080
227 Ga0068860_100001088
228 Ga0068860_100272728
229 Ga0068862_100078310
230 Ga0081455_10003266
231 Ga0081538_10000798
232 Ga0081539_10010513
233 Ga0081539_10011422
234 Ga0070717_10265775
235 Ga0070712_100294481
236 Ga0097621_100025657
237 Ga0075428_100000242
238 Ga0075430_100116408
239 Ga0075431_100015075
240 Ga0075431_100024890
241 Ga0097620_100272875
242 Ga0097620_100278220
243 Ga0111539_10002446
244 Ga0111539_10069229
245 Ga0105245_10075562
246 Ga0114129_10023946
247 Ga0114129_10423088
248 Ga0105243_10042579
249 Ga0105248_10001537
250 Ga0105248_10009450
251 Ga0105248_10077519
252 Ga0105237_10084235
253 Ga0105237_10223133
254 Ga0105238_10080586
255 Ga0105249_10025430
256 Ga0105239_10030043
257 Ga0105239_10132771
258 Ga0105246_10035514
259 Ga0157369_10190102
260 Ga0157378_10000234
261 Ga0157378_10001834
262 Ga0157375_10017577
263 Ga0163163_10002102
264 Ga0157377_10022329
265 Ga0207688_10009451
266 Ga0207680_10044174
267 Ga0207645_10012756
268 Ga0207643_10006492
269 Ga0207693_10070547
270 Ga0207693_10080062
271 Ga0207693_10245604
272 Ga0207662_10022557
273 Ga0207646_10052620
274 Ga0207659_10135449
275 Ga0207687_10049905
276 Ga0207664_10151806
277 Ga0207670_10023845
278 Ga0207665_10037268
279 Ga0207711_10005577
280 Ga0207689_10007599
281 Ga0207689_10102963
282 Ga0207661_10007995
283 Ga0207679_10071726
284 Ga0207668_10003635
285 Ga0207658_10057986
286 Ga0207677_10006416
287 Ga0207703_10204046
288 Ga0207678_10016478
289 Ga0207678_10032364
290 Ga0207676_10030221
291 Ga0207676_10131244
292 Ga0207674_10033645
293 Ga0207674_10196116
294 Ga0207675_100004063
295 Ga0207698_10036478
296 Ga0207428_10003966
297 Ga0268265_10008410
298 Ga0268265_10061910
299 Ga0268264_10002340
300 Ga0307515_10010077
301 Ga0307515_10186147
302 Ga0307408_100030778
303 Ga0307405_10012627
304 Ga0307405_10031183
305 Ga0307406_10017088
306 Ga0307416_100112341
307 Ga0307414_10005618
308 Ga0307415_100000420
309 Ga0307415_100065649
310 Ga0307415_100197308
311 Ga0373942_0000402
312 Ga0373962_0000588
313 Ga0373924_0000003
314 Ga0373935_0164171
315 Ga0436365_0843074
316 Ga0466972_0014683
317 Ga0466965_0095306
318 Ga0466968_0002098
319 Ga0466968_0060426
320 Ga0466967_0009878
321 Ga0495623_0016662
322 Ga0496100_0069141
323 Ga0496102_0190753
324 Ga0496108_0000034
325 Ga0496108_0044960
326 Ga0496108_0053840
327 Ga0496108_0083528
328 Ga0496109_0002923
329 Ga0496109_0185032
330 Ga0496110_0006870
331 Ga0496111_0022286
332 Ga0496112_0193022
333 Ga0496112_0255338
334 Ga0501292_007873
335 Ga0501298_007403
336 Ga0501036_0016246
337 Ga0501038_0228517
338 Ga0501040_0075638
339 Ga0501041_0075009
340 Ga0501048_0033468
341 Ga0501076_0075559
342 Ga0501077_0088694
343 Ga0501077_0113788
344 Ga0501198_003440
345 Ga0501202_000631
346 Ga0501216_001243
347 Ga0501216_003413
348 Ga0501217_007597
349 Ga0501224_001324
350 Ga0501224_007020
351 Ga0501227_000322
352 Ga0501230_002290
353 Ga0501233_004859
354 Ga0501235_004645
355 Ga0501242_005048
356 Ga0501249_014362
357 Ga0501229_001560
358 Ga0501234_000496
359 Ga0501245_006874
360 Ga0501283_006740
361 Ga0501045_0043730
362 Ga0501226_002291
363 nmdc:mga05p37_520064_c1
364 nmdc:mga05p37_58158_c1
365 nmdc:mga06r32_10266_c1
366 nmdc:mga06r32_19917_c1
367 nmdc:mga06r32_56769_c1
368 nmdc:mga08y16_1041_c1
369 nmdc:mga08y16_28740_c1
370 Ga0500555_001907
371 Ga0500616_0000752
372 Ga0500616_0002281
373 Ga0501084_0050274
374 Ga0501082_0093702
375 2548692272
376 2793976826
377 8001787118
378 8047898017
379 8048360876
380 8048374980
381 8048383226
382 8053952339

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00067

p450

Cytochrome P450

211

428

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
5gnl-assembly1.cif.gz_A cytochrome p450 vdh (cyp107br1) f106v mutant 0.9478 1 390
5gnm-assembly4.cif.gz_D cytochrome p450 vdh (cyp107br1) l348m mutant 0.9467 1 390
3a4g-assembly1.cif.gz_A structure of cytochrome p450 vdh from pseudonocardia autotrophica (trigonal crystal form) 0.9425 1 390
7wex-assembly1.cif.gz_A the crystal structure of substrate-free cyp107x1 from streptomyces avermitilis 0.9359 4 386
5l94-assembly2.cif.gz_B the 2.25 a crystal structure of cyp109e1 from bacillus megaterium in complex with testosterone 0.9339 4 388
ID Description Score Start End Superfamily
5ofqD00 Mainly Alpha;Orthogonal Bundle;Cytochrome p450;Cytochrome P450 0.9273 1 389 1.10.630.10
6gmfA00 Mainly Alpha;Orthogonal Bundle;Cytochrome p450;Cytochrome P450 0.921 1 391 1.10.630.10
5vwsA00 Mainly Alpha;Orthogonal Bundle;Cytochrome p450;Cytochrome P450 0.9201 4 389 1.10.630.10
5l92B00 Mainly Alpha;Orthogonal Bundle;Cytochrome p450;Cytochrome P450 0.9196 4 388 1.10.630.10
4rm4A00 Mainly Alpha;Orthogonal Bundle;Cytochrome p450;Cytochrome P450 0.9172 2 388 1.10.630.10
ID Description Score Start End GO Terms
AF-A0A534PBB6-F1-model_v4 Cytochrome P450 0.9792 219 391 GO:0004497
GO:0005506
GO:0016705
GO:0020037
AF-A0A499UEL5-F1-model_v4 Cytochrome P450 0.9703 268 389 GO:0005506
GO:0006707
GO:0008395
GO:0020037
GO:0036199
AF-A0A3D8WXR5-F1-model_v4 Cytochrome P450 0.9691 223 391 GO:0004497
GO:0005506
GO:0016705
GO:0020037
AF-A0A4R5BCH8-F1-model_v4 Cytochrome P450 0.9686 199 386 GO:0004497
GO:0005506
GO:0016705
GO:0020037
AF-E5WLF8-F1-model_v4 deleted 0.9662 205 391

Map