F291772
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 189 | 156 | 378 | 350 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|8047710418|8047718185 |
| Length | 344 |
| Sequence | LLSEAPLLVAARGGTPSRTPVWFMRQAGRSLPEYRKLREGTAMLDACMDPEMVCEITMQPVRRHDVDAAILFSDIVVPLKAAGVDLDIVPGVGPVVANPVRTAADVAALPVLRVEQVQPVLDAIGLLLKELGGVPLIGFAGAPFTLASYLVEGGPSRNHEKTKALMHGDPELWHALLGRIADLTAEFLRAQVEAGVSAVQLFDSWAGALSERDYREFVLPHSTRVLSSISGVPRIHFGVGTGELLPAMREAGADVVGVDWRIPLDEAVRRLREAAPELPVPVVQGNLDPALLFAGVPALEREVERIVGEGKAAAGHIFNLGHGVLPDTDPEMITKAVELVHAAG |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 2 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 3 | 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Metagenome | Rhizosphere |
| 4 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Metagenome | Rhizosphere |
| 6 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 8 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 9 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 10 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 11 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 12 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 13 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 14 | 3300006042 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 | Metagenome | Endosphere |
| 15 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 16 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 17 | 3300006177 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 | Metagenome | Endosphere |
| 18 | 3300006178 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Metagenome | Endosphere |
| 19 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 20 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 21 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 22 | 3300007076 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Metagenome | Rhizosphere |
| 23 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 25 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 27 | 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 28 | 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 46 | 3300030731 | Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 | Metagenome | Rhizosphere |
| 47 | 3300030732 | Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 | Metagenome | Rhizosphere |
| 48 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 49 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 50 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 51 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 52 | 3300035118 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 | Metagenome | Rhizosphere |
| 53 | 3300035119 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 | Metagenome | Rhizosphere |
| 54 | 3300035172 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 | Metagenome | Rhizosphere |
| 55 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 56 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 57 | 3300035725 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 | Metagenome | Rhizosphere |
| 58 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 59 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 60 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 61 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 62 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 63 | 3300042146 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 | Metagenome | Rhizosphere |
| 64 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 65 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 66 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 67 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 68 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 69 | 3300044719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R | Metagenome | Rhizosphere |
| 70 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 71 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 72 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 73 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 74 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 75 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 76 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 77 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300046461 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300046463 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 82 | 3300046475 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 84 | 3300046511 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300046514 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere | Metagenome | Rhizosphere |
| 86 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300046531 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300046533 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere | Metagenome | Rhizosphere |
| 91 | 3300046535 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere | Metagenome | Rhizosphere |
| 92 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300046642 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300046675 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300046678 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300046680 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 101 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300046690 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300047471 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300047673 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300048089 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 109 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 110 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 111 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 112 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 113 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 114 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 115 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 116 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 117 | 3300050490 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation | Metagenome | Endosphere |
| 118 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 119 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 120 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 121 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 122 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 123 | 3300050513 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation | Metagenome | Rhizosphere |
| 124 | 3300050514 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation | Metagenome | Rhizosphere |
| 125 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 126 | 3300053078 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere | Metagenome | Rhizosphere |
| 127 | 3300053084 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 129 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 130 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 131 | 8047710418 | Umezawaea endophytica DSM 103496 | Isolate | Unclassified |
| 132 | 2547132424 | Nocardia nova SH22a | Isolate | Unclassified |
| 133 | 2551306166 | Nocardia tenerifensis NBRC 101015 | Isolate | Rhizosphere |
| 134 | 2643221615 | Nocardioides sp. Root224 | Isolate | Unclassified |
| 135 | 2643221657 | Nocardioides sp. Root1257 | Isolate | Unclassified |
| 136 | 2643221679 | Angustibacter sp. Root456 | Isolate | Unclassified |
| 137 | 2643221711 | Terrabacter sp. Root85 | Isolate | Unclassified |
| 138 | 2675903058 | Actinopolymorpha cephalotaxi CPCC 202808 | Isolate | Rhizosphere |
| 139 | 2738543011 | Rhodococcus sp. OK611 | Isolate | Unclassified |
| 140 | 2795385472 | Herbihabitans rhizosphaerae DSM 101727 | Isolate | Rhizosphere |
| 141 | 2818991318 | Humibacillus xanthopallidus SLBN-155 | Isolate | Unclassified |
| 142 | 2818991458 | Terrabacter sp. 3211 | Isolate | Rhizosphere |
| 143 | 2818991462 | Terrabacter sp. 3264 | Isolate | Rhizosphere |
| 144 | 2818991469 | Terrabacter lapilli 3265 | Isolate | Rhizosphere |
| 145 | 2827628540 | Actinopolymorpha cephalotaxi DSM 45117 | Isolate | Rhizosphere |
| 146 | 2855386786 | Nocardioides ferulae EGI 63112 | Isolate | Unclassified |
| 147 | 2857710386 | Brevibacterium sp. R-73093 | Isolate | Unclassified |
| 148 | 2889300758 | Rhodococcus sp. PvR099 | Isolate | Rhizosphere |
| 149 | 2891326441 | Actinokineospora pegani TRM65233 | Isolate | Unclassified |
| 150 | 2928142448 | Prescottella equi DPS 2018 | Isolate | Unclassified |
| 151 | 2939743619 | Rhodococcus sp. PvR044 | Isolate | Rhizosphere |
| 152 | 2974315732 | Rhodococcus sp. SORGH_AS 301 | Isolate | Unclassified |
| 153 | 2984523437 | Rhodococcus sp. SORGH_AS303 | Isolate | Aerial Root |
| 154 | 3001889506 | Janibacter sp. YIM B02568 | Isolate | Unclassified |
| 155 | 8054472261 | Pseudonocardia terrae RS11V-5 | Isolate | Rhizosphere |
| 156 | 8056060235 | Nocardiopsis endophytica RSe5-2 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 85.71 |
| Metatranscriptomes | 0.53 |
| Isolates | 13.76 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0.53 |
| Bulb | 0 |
| Endosphere | 12.7 |
| Nodule | 0 |
| Rhizoplane | 1.59 |
| Rhizosphere | 75.13 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070668_100028044 | 3300005347 | Bacteria | 4274 |
| 2 | Ga0070714_100001830 | 3300005435 | Bacteria | 15473 |
| 3 | Ga0070710_10000436 | 3300005437 | Bacteria | 19538 |
| 4 | Ga0070662_100069343 | 3300005457 | Bacteria | 2594 |
| 5 | Ga0070685_10023430 | 3300005466 | Bacteria | 3380 |
| 6 | Ga0070665_100286783 | 3300005548 | Bacteria | 1648 |
| 7 | Ga0068855_100249751 | 3300005563 | Bacteria | 1979 |
| 8 | Ga0068856_100061928 | 3300005614 | Bacteria | 3696 |
| 9 | Ga0068852_100281061 | 3300005616 | Bacteria | 1604 |
| 10 | Ga0068851_10103504 | 3300005834 | Bacteria | 1513 |
| 11 | Ga0068860_100001073 | 3300005843 | Bacteria | 30143 |
| 12 | Ga0081539_10084245 | 3300005985 | Bacteria | 1662 |
| 13 | Ga0075365_10037816 | 3300006038 | Bacteria | 3134 |
| 14 | Ga0075365_10093929 | 3300006038 | Bacteria | 2046 |
| 15 | Ga0075365_10219279 | 3300006038 | Bacteria | 1334 |
| 16 | Ga0075368_10000529 | 3300006042 | Bacteria | 11406 |
| 17 | Ga0075368_10001240 | 3300006042 | Bacteria | 8061 |
| 18 | Ga0075363_100015163 | 3300006048 | Bacteria | 3782 |
| 19 | Ga0075364_10010760 | 3300006051 | Bacteria | 5535 |
| 20 | Ga0075364_10042151 | 3300006051 | Bacteria | 2965 |
| 21 | Ga0075364_10045780 | 3300006051 | Bacteria | 2847 |
| 22 | Ga0075362_10002170 | 3300006177 | Bacteria | 6500 |
| 23 | Ga0075367_10011853 | 3300006178 | Bacteria | 4629 |
| 24 | Ga0075370_10006141 | 3300006353 | Bacteria | 6025 |
| 25 | Ga0075370_10035700 | 3300006353 | Bacteria | 2791 |
| 26 | Ga0075370_10036622 | 3300006353 | Bacteria | 2756 |
| 27 | Ga0075436_100036366 | 3300006914 | Bacteria | 3398 |
| 28 | Ga0097620_100136489 | 3300006931 | Bacteria | 2526 |
| 29 | Ga0075435_100013582 | 3300007076 | Bacteria | 6063 |
| 30 | Ga0105238_10581552 | 3300009551 | Bacteria | 1126 |
| 31 | Ga0105239_10146420 | 3300010375 | Bacteria | 2634 |
| 32 | Ga0163161_10102051 | 3300017792 | Bacteria | 2136 |
| 33 | Ga0206353_10048507 | 3300020082 | Bacteria | 1347 |
| 34 | Ga0207692_10000140 | 3300025898 | Bacteria | 22277 |
| 35 | Ga0207688_10009418 | 3300025901 | Bacteria | 5318 |
| 36 | Ga0207657_10177465 | 3300025919 | Bacteria | 1723 |
| 37 | Ga0207687_10010899 | 3300025927 | Bacteria | 5940 |
| 38 | Ga0207664_10039946 | 3300025929 | Bacteria | 3644 |
| 39 | Ga0207664_10081890 | 3300025929 | Bacteria | 2628 |
| 40 | Ga0207706_10048930 | 3300025933 | Bacteria | 3738 |
| 41 | Ga0207669_10204666 | 3300025937 | Bacteria | 1436 |
| 42 | Ga0207689_10043432 | 3300025942 | Bacteria | 3716 |
| 43 | Ga0207712_10023215 | 3300025961 | Bacteria | 4091 |
| 44 | Ga0207668_10005677 | 3300025972 | Bacteria | 7347 |
| 45 | Ga0207678_10042851 | 3300026067 | Bacteria | 3919 |
| 46 | Ga0207708_10137327 | 3300026075 | Bacteria | 1915 |
| 47 | Ga0207702_10236626 | 3300026078 | Bacteria | 1709 |
| 48 | Ga0207674_10028240 | 3300026116 | Bacteria | 5924 |
| 49 | Ga0207675_100015500 | 3300026118 | Bacteria | 7110 |
| 50 | Ga0207683_10072260 | 3300026121 | Bacteria | 3051 |
| 51 | Ga0268266_10026726 | 3300028379 | Bacteria | 4911 |
| 52 | Ga0268264_10000687 | 3300028381 | Bacteria | 39363 |
| 53 | Ga0268264_10074086 | 3300028381 | Bacteria | 2891 |
| 54 | Ga0307515_10000146 | 3300028794 | Bacteria | 170674 |
| 55 | Ga0316177_1080919 | 3300030731 | Bacteria | 2394 |
| 56 | Ga0316176_1211531 | 3300030732 | Bacteria | 8563 |
| 57 | Ga0265340_10006764 | 3300031247 | Bacteria | 6273 |
| 58 | Ga0307413_10038727 | 3300031824 | Bacteria | 2766 |
| 59 | Ga0307413_10082139 | 3300031824 | Bacteria | 2069 |
| 60 | Ga0307407_10092352 | 3300031903 | Bacteria | 1859 |
| 61 | Ga0307510_10046272 | 3300033180 | Bacteria | 4681 |
| 62 | Ga0373954_0045120 | 3300035118 | Bacteria | 2058 |
| 63 | Ga0373956_0001517 | 3300035119 | Bacteria | 9594 |
| 64 | Ga0373955_0042545 | 3300035172 | Bacteria | 2439 |
| 65 | Ga0373935_0075729 | 3300035692 | Bacteria | 2177 |
| 66 | Ga0373933_0028210 | 3300035724 | Bacteria | 3236 |
| 67 | Ga0373947_0186483 | 3300035725 | Bacteria | 1352 |
| 68 | Ga0373925_0128160 | 3300037068 | Bacteria | 1976 |
| 69 | Ga0395899_0014711 | 3300037312 | Bacteria | 5972 |
| 70 | Ga0395899_0113940 | 3300037312 | Bacteria | 1942 |
| 71 | Ga0395898_0036019 | 3300037466 | Bacteria | 4917 |
| 72 | Ga0436364_1197709 | 3300037853 | Bacteria | 38602 |
| 73 | Ga0395901_0004754 | 3300038443 | Bacteria | 13702 |
| 74 | Ga0450907_006797 | 3300042146 | Bacteria | 1910 |
| 75 | Ga0466969_0012160 | 3300044656 | Bacteria | 4547 |
| 76 | Ga0466972_0003003 | 3300044658 | Bacteria | 8361 |
| 77 | Ga0466972_0008383 | 3300044658 | Bacteria | 5180 |
| 78 | Ga0466965_0000757 | 3300044683 | Bacteria | 12139 |
| 79 | Ga0466965_0003258 | 3300044683 | Bacteria | 7102 |
| 80 | Ga0466965_0040204 | 3300044683 | Bacteria | 2301 |
| 81 | Ga0466965_0044586 | 3300044683 | Bacteria | 2192 |
| 82 | Ga0466966_0007561 | 3300044684 | Bacteria | 7198 |
| 83 | Ga0466966_0009619 | 3300044684 | Bacteria | 6398 |
| 84 | Ga0466961_0006735 | 3300044693 | Bacteria | 7311 |
| 85 | Ga0466961_0052828 | 3300044693 | Bacteria | 2594 |
| 86 | Ga0466971_0016110 | 3300044719 | Bacteria | 3294 |
| 87 | Ga0466971_0113594 | 3300044719 | Bacteria | 1251 |
| 88 | Ga0466968_0042774 | 3300044735 | Bacteria | 1916 |
| 89 | Ga0466970_0025874 | 3300044765 | Bacteria | 3074 |
| 90 | Ga0466970_0075446 | 3300044765 | Bacteria | 1816 |
| 91 | Ga0466957_0056151 | 3300044842 | Bacteria | 2407 |
| 92 | Ga0466960_0008679 | 3300044901 | Bacteria | 4169 |
| 93 | Ga0466960_0013042 | 3300044901 | Bacteria | 3521 |
| 94 | Ga0466959_0002776 | 3300045049 | Bacteria | 11263 |
| 95 | Ga0466959_0015736 | 3300045049 | Bacteria | 5516 |
| 96 | Ga0466958_0037080 | 3300045836 | Bacteria | 2920 |
| 97 | Ga0466958_0047513 | 3300045836 | Bacteria | 2591 |
| 98 | Ga0466967_0031830 | 3300045976 | Bacteria | 4447 |
| 99 | Ga0466967_0065771 | 3300045976 | Bacteria | 3228 |
| 100 | Ga0495629_0009485 | 3300046459 | Bacteria | 7116 |
| 101 | Ga0495641_0077658 | 3300046461 | Bacteria | 1488 |
| 102 | Ga0495651_0009123 | 3300046462 | Bacteria | 7613 |
| 103 | Ga0495653_0116503 | 3300046463 | Bacteria | 1910 |
| 104 | Ga0495582_0020797 | 3300046473 | Bacteria | 3593 |
| 105 | Ga0495639_0017256 | 3300046475 | Bacteria | 3135 |
| 106 | Ga0495664_0054514 | 3300046477 | Bacteria | 2377 |
| 107 | Ga0495608_0092559 | 3300046511 | Bacteria | 1953 |
| 108 | Ga0495618_0047868 | 3300046514 | Bacteria | 2698 |
| 109 | Ga0495628_0131878 | 3300046516 | Bacteria | 1910 |
| 110 | Ga0495630_0112428 | 3300046517 | Bacteria | 2062 |
| 111 | Ga0495652_0141991 | 3300046529 | Bacteria | 1887 |
| 112 | Ga0495665_0102022 | 3300046531 | Bacteria | 1505 |
| 113 | Ga0495640_0033643 | 3300046533 | Bacteria | 3640 |
| 114 | Ga0495586_0096350 | 3300046535 | Bacteria | 1638 |
| 115 | Ga0495645_0099031 | 3300046543 | Bacteria | 2074 |
| 116 | Ga0495667_0119431 | 3300046559 | Bacteria | 1702 |
| 117 | Ga0495634_0058988 | 3300046642 | Bacteria | 2557 |
| 118 | Ga0495635_0146637 | 3300046663 | Bacteria | 1606 |
| 119 | Ga0495657_0022595 | 3300046675 | Bacteria | 4502 |
| 120 | Ga0495599_0023568 | 3300046678 | Bacteria | 3848 |
| 121 | Ga0495623_0060734 | 3300046679 | Bacteria | 2371 |
| 122 | Ga0495646_0079939 | 3300046680 | Bacteria | 1907 |
| 123 | Ga0495658_0007791 | 3300046683 | Bacteria | 5302 |
| 124 | Ga0495613_0140828 | 3300046689 | Bacteria | 1723 |
| 125 | Ga0495624_0086711 | 3300046690 | Bacteria | 1933 |
| 126 | Ga0495581_0134445 | 3300047315 | Bacteria | 1441 |
| 127 | Ga0495674_0137550 | 3300047319 | Bacteria | 2054 |
| 128 | Ga0495684_0073598 | 3300047471 | Bacteria | 2595 |
| 129 | Ga0495593_0003032 | 3300047673 | Bacteria | 10118 |
| 130 | Ga0495614_0046431 | 3300048089 | Bacteria | 1862 |
| 131 | Ga0496108_0281556 | 3300048911 | Bacteria | 1448 |
| 132 | Ga0496109_0185831 | 3300048912 | Bacteria | 1953 |
| 133 | Ga0496109_0211391 | 3300048912 | Bacteria | 1824 |
| 134 | Ga0496124_0018311 | 3300048927 | Bacteria | 6563 |
| 135 | Ga0501067_0042177 | 3300049583 | Bacteria | 2533 |
| 136 | Ga0501072_0096849 | 3300049588 | Bacteria | 2345 |
| 137 | Ga0501073_0058207 | 3300049589 | Bacteria | 2701 |
| 138 | Ga0501073_0139197 | 3300049589 | Bacteria | 1682 |
| 139 | Ga0501075_0114474 | 3300049591 | Bacteria | 2051 |
| 140 | Ga0501035_0306523 | 3300049822 | Bacteria | 1337 |
| 141 | Ga0501045_0138552 | 3300049824 | Bacteria | 1809 |
| 142 | nmdc:mga03n38_186623_c1 | 3300050490 | Bacteria | 1066 |
| 143 | nmdc:mga03n38_25896_c1 | 3300050490 | Bacteria | 2416 |
| 144 | nmdc:mga03n38_31556_c1 | 3300050490 | Bacteria | 2237 |
| 145 | nmdc:mga00v17_114680_c1 | 3300050491 | Bacteria | 1712 |
| 146 | nmdc:mga00v17_255750_c1 | 3300050491 | Bacteria | 1136 |
| 147 | nmdc:mga0yw44_13128_c1 | 3300050492 | Bacteria | 4349 |
| 148 | nmdc:mga0yw44_59563_c1 | 3300050492 | Bacteria | 2336 |
| 149 | nmdc:mga0yw44_87343_c1 | 3300050492 | Bacteria | 1966 |
| 150 | nmdc:mga0yw44_93540_c1 | 3300050492 | Bacteria | 1904 |
| 151 | nmdc:mga07m45_12255_c1 | 3300050496 | Bacteria | 4528 |
| 152 | nmdc:mga08y16_13487_c1 | 3300050511 | Bacteria | 8600 |
| 153 | nmdc:mga0n895_15551_c1 | 3300050512 | Bacteria | 6944 |
| 154 | nmdc:mga0rr50_10409_c1 | 3300050513 | Bacteria | 5899 |
| 155 | nmdc:mga0rr50_45170_c1 | 3300050513 | Bacteria | 3236 |
| 156 | nmdc:mga08x19_33155_c1 | 3300050514 | Bacteria | 3259 |
| 157 | Ga0495601_0026836 | 3300053077 | Bacteria | 3558 |
| 158 | Ga0495612_0003871 | 3300053078 | Bacteria | 6208 |
| 159 | Ga0495595_0052331 | 3300053084 | Bacteria | 1894 |
| 160 | Ga0495619_0057976 | 3300053085 | Bacteria | 2570 |
| 161 | Ga0501082_0018843 | 3300060353 | Bacteria | 5947 |
| 162 | Ga0501082_0223447 | 3300060353 | Bacteria | 1639 |
| 163 | Ga0466962_0013584 | 3300061719 | Bacteria | 3921 |
| 164 | 8047718185 | 8047710418 | Bacteria | 11023148 |
| 165 | 2548697519 | 2547132424 | Bacteria | 8348532 |
| 166 | 2552109127 | 2551306166 | Bacteria | 9731570 |
| 167 | 2644091540 | 2643221615 | Bacteria | 5487866 |
| 168 | 2644321343 | 2643221657 | Bacteria | 5490246 |
| 169 | 2644445338 | 2643221679 | Bacteria | 3839507 |
| 170 | 2644609530 | 2643221711 | Bacteria | 4865335 |
| 171 | 2676474861 | 2675903058 | Bacteria | 6822861 |
| 172 | 2739237174 | 2738543011 | Bacteria | 5731169 |
| 173 | 2795796310 | 2795385472 | Bacteria | 6627535 |
| 174 | 2819427337 | 2818991318 | Bacteria | 5266538 |
| 175 | 2819666364 | 2818991458 | Bacteria | 4794049 |
| 176 | 2819693211 | 2818991462 | Bacteria | 4320267 |
| 177 | 2819730147 | 2818991469 | Bacteria | 4644110 |
| 178 | 2827630971 | 2827628540 | Bacteria | 6858585 |
| 179 | 2855389536 | 2855386786 | Bacteria | 4752232 |
| 180 | 2857711540 | 2857710386 | Bacteria | 3186771 |
| 181 | 2889301399 | 2889300758 | Bacteria | 5690814 |
| 182 | 2891327647 | 2891326441 | Bacteria | 6439512 |
| 183 | 2928144709 | 2928142448 | Bacteria | 5288925 |
| 184 | 2939749013 | 2939743619 | Bacteria | 5762299 |
| 185 | 2974317458 | 2974315732 | Bacteria | 4602776 |
| 186 | 2984525668 | 2984523437 | Bacteria | 4508481 |
| 187 | 3001891314 | 3001889506 | Bacteria | 2975194 |
| 188 | 8054476412 | 8054472261 | Bacteria | 7464355 |
| 189 | 8056066636 | 8056060235 | Bacteria | 7259403 |
| 190 | Ga0070668_100028044 | |||
| 191 | Ga0070714_100001830 | |||
| 192 | Ga0070710_10000436 | |||
| 193 | Ga0070662_100069343 | |||
| 194 | Ga0070685_10023430 | |||
| 195 | Ga0070665_100286783 | |||
| 196 | Ga0068855_100249751 | |||
| 197 | Ga0068856_100061928 | |||
| 198 | Ga0068852_100281061 | |||
| 199 | Ga0068851_10103504 | |||
| 200 | Ga0068860_100001073 | |||
| 201 | Ga0081539_10084245 | |||
| 202 | Ga0075365_10037816 | |||
| 203 | Ga0075365_10093929 | |||
| 204 | Ga0075365_10219279 | |||
| 205 | Ga0075368_10000529 | |||
| 206 | Ga0075368_10001240 | |||
| 207 | Ga0075363_100015163 | |||
| 208 | Ga0075364_10010760 | |||
| 209 | Ga0075364_10042151 | |||
| 210 | Ga0075364_10045780 | |||
| 211 | Ga0075362_10002170 | |||
| 212 | Ga0075367_10011853 | |||
| 213 | Ga0075370_10006141 | |||
| 214 | Ga0075370_10035700 | |||
| 215 | Ga0075370_10036622 | |||
| 216 | Ga0075436_100036366 | |||
| 217 | Ga0097620_100136489 | |||
| 218 | Ga0075435_100013582 | |||
| 219 | Ga0105238_10581552 | |||
| 220 | Ga0105239_10146420 | |||
| 221 | Ga0163161_10102051 | |||
| 222 | Ga0206353_10048507 | |||
| 223 | Ga0207692_10000140 | |||
| 224 | Ga0207688_10009418 | |||
| 225 | Ga0207657_10177465 | |||
| 226 | Ga0207687_10010899 | |||
| 227 | Ga0207664_10039946 | |||
| 228 | Ga0207664_10081890 | |||
| 229 | Ga0207706_10048930 | |||
| 230 | Ga0207669_10204666 | |||
| 231 | Ga0207689_10043432 | |||
| 232 | Ga0207712_10023215 | |||
| 233 | Ga0207668_10005677 | |||
| 234 | Ga0207678_10042851 | |||
| 235 | Ga0207708_10137327 | |||
| 236 | Ga0207702_10236626 | |||
| 237 | Ga0207674_10028240 | |||
| 238 | Ga0207675_100015500 | |||
| 239 | Ga0207683_10072260 | |||
| 240 | Ga0268266_10026726 | |||
| 241 | Ga0268264_10000687 | |||
| 242 | Ga0268264_10074086 | |||
| 243 | Ga0307515_10000146 | |||
| 244 | Ga0316177_1080919 | |||
| 245 | Ga0316176_1211531 | |||
| 246 | Ga0265340_10006764 | |||
| 247 | Ga0307413_10038727 | |||
| 248 | Ga0307413_10082139 | |||
| 249 | Ga0307407_10092352 | |||
| 250 | Ga0307510_10046272 | |||
| 251 | Ga0373954_0045120 | |||
| 252 | Ga0373956_0001517 | |||
| 253 | Ga0373955_0042545 | |||
| 254 | Ga0373935_0075729 | |||
| 255 | Ga0373933_0028210 | |||
| 256 | Ga0373947_0186483 | |||
| 257 | Ga0373925_0128160 | |||
| 258 | Ga0395899_0014711 | |||
| 259 | Ga0395899_0113940 | |||
| 260 | Ga0395898_0036019 | |||
| 261 | Ga0436364_1197709 | |||
| 262 | Ga0395901_0004754 | |||
| 263 | Ga0450907_006797 | |||
| 264 | Ga0466969_0012160 | |||
| 265 | Ga0466972_0003003 | |||
| 266 | Ga0466972_0008383 | |||
| 267 | Ga0466965_0000757 | |||
| 268 | Ga0466965_0003258 | |||
| 269 | Ga0466965_0040204 | |||
| 270 | Ga0466965_0044586 | |||
| 271 | Ga0466966_0007561 | |||
| 272 | Ga0466966_0009619 | |||
| 273 | Ga0466961_0006735 | |||
| 274 | Ga0466961_0052828 | |||
| 275 | Ga0466971_0016110 | |||
| 276 | Ga0466971_0113594 | |||
| 277 | Ga0466968_0042774 | |||
| 278 | Ga0466970_0025874 | |||
| 279 | Ga0466970_0075446 | |||
| 280 | Ga0466957_0056151 | |||
| 281 | Ga0466960_0008679 | |||
| 282 | Ga0466960_0013042 | |||
| 283 | Ga0466959_0002776 | |||
| 284 | Ga0466959_0015736 | |||
| 285 | Ga0466958_0037080 | |||
| 286 | Ga0466958_0047513 | |||
| 287 | Ga0466967_0031830 | |||
| 288 | Ga0466967_0065771 | |||
| 289 | Ga0495629_0009485 | |||
| 290 | Ga0495641_0077658 | |||
| 291 | Ga0495651_0009123 | |||
| 292 | Ga0495653_0116503 | |||
| 293 | Ga0495582_0020797 | |||
| 294 | Ga0495639_0017256 | |||
| 295 | Ga0495664_0054514 | |||
| 296 | Ga0495608_0092559 | |||
| 297 | Ga0495618_0047868 | |||
| 298 | Ga0495628_0131878 | |||
| 299 | Ga0495630_0112428 | |||
| 300 | Ga0495652_0141991 | |||
| 301 | Ga0495665_0102022 | |||
| 302 | Ga0495640_0033643 | |||
| 303 | Ga0495586_0096350 | |||
| 304 | Ga0495645_0099031 | |||
| 305 | Ga0495667_0119431 | |||
| 306 | Ga0495634_0058988 | |||
| 307 | Ga0495635_0146637 | |||
| 308 | Ga0495657_0022595 | |||
| 309 | Ga0495599_0023568 | |||
| 310 | Ga0495623_0060734 | |||
| 311 | Ga0495646_0079939 | |||
| 312 | Ga0495658_0007791 | |||
| 313 | Ga0495613_0140828 | |||
| 314 | Ga0495624_0086711 | |||
| 315 | Ga0495581_0134445 | |||
| 316 | Ga0495674_0137550 | |||
| 317 | Ga0495684_0073598 | |||
| 318 | Ga0495593_0003032 | |||
| 319 | Ga0495614_0046431 | |||
| 320 | Ga0496108_0281556 | |||
| 321 | Ga0496109_0185831 | |||
| 322 | Ga0496109_0211391 | |||
| 323 | Ga0496124_0018311 | |||
| 324 | Ga0501067_0042177 | |||
| 325 | Ga0501072_0096849 | |||
| 326 | Ga0501073_0058207 | |||
| 327 | Ga0501073_0139197 | |||
| 328 | Ga0501075_0114474 | |||
| 329 | Ga0501035_0306523 | |||
| 330 | Ga0501045_0138552 | |||
| 331 | nmdc:mga03n38_186623_c1 | |||
| 332 | nmdc:mga03n38_25896_c1 | |||
| 333 | nmdc:mga03n38_31556_c1 | |||
| 334 | nmdc:mga00v17_114680_c1 | |||
| 335 | nmdc:mga00v17_255750_c1 | |||
| 336 | nmdc:mga0yw44_13128_c1 | |||
| 337 | nmdc:mga0yw44_59563_c1 | |||
| 338 | nmdc:mga0yw44_87343_c1 | |||
| 339 | nmdc:mga0yw44_93540_c1 | |||
| 340 | nmdc:mga07m45_12255_c1 | |||
| 341 | nmdc:mga08y16_13487_c1 | |||
| 342 | nmdc:mga0n895_15551_c1 | |||
| 343 | nmdc:mga0rr50_10409_c1 | |||
| 344 | nmdc:mga0rr50_45170_c1 | |||
| 345 | nmdc:mga08x19_33155_c1 | |||
| 346 | Ga0495601_0026836 | |||
| 347 | Ga0495612_0003871 | |||
| 348 | Ga0495595_0052331 | |||
| 349 | Ga0495619_0057976 | |||
| 350 | Ga0501082_0018843 | |||
| 351 | Ga0501082_0223447 | |||
| 352 | Ga0466962_0013584 | |||
| 353 | 8047718185 | |||
| 354 | 2548697519 | |||
| 355 | 2552109127 | |||
| 356 | 2644091540 | |||
| 357 | 2644321343 | |||
| 358 | 2644445338 | |||
| 359 | 2644609530 | |||
| 360 | 2676474861 | |||
| 361 | 2739237174 | |||
| 362 | 2795796310 | |||
| 363 | 2819427337 | |||
| 364 | 2819666364 | |||
| 365 | 2819693211 | |||
| 366 | 2819730147 | |||
| 367 | 2827630971 | |||
| 368 | 2855389536 | |||
| 369 | 2857711540 | |||
| 370 | 2889301399 | |||
| 371 | 2891327647 | |||
| 372 | 2928144709 | |||
| 373 | 2939749013 | |||
| 374 | 2974317458 | |||
| 375 | 2984525668 | |||
| 376 | 3001891314 | |||
| 377 | 8054476412 | |||
| 378 | 8056066636 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 4wsh-assembly1.cif.gz_A | crystal structure of probable uroporphyrinogen decarboxylase (upd) (uro-d) from pseudomonas aeruginosa | 0.9556 | 26 | 357 |
| 3cyv-assembly1.cif.gz_A-2 | crystal structure of uroporphyrinogen decarboxylase from shigella flexineri: new insights into its catalytic mechanism | 0.9551 | 23 | 357 |
| 1r3s-assembly1.cif.gz_A | uroporphyrinogen decarboxylase single mutant d86g in complex with coproporphyrinogen-i | 0.9504 | 23 | 357 |
| 1r3q-assembly1.cif.gz_A | uroporphyrinogen decarboxylase in complex with coproporphyrinogen-i | 0.9501 | 23 | 357 |
| 1r3r-assembly1.cif.gz_A-2 | uroporphyrinogen decarboxylase with mutation d86n | 0.95 | 23 | 357 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P9WFE1_2_357_3.20.20.210 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9776 | 18 | 356 | 3.20.20.210 |
| af_P32347_4_362_3.20.20.210 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9505 | 22 | 357 | 3.20.20.210 |
| 1r3sA00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9504 | 23 | 357 | 3.20.20.210 |
| 2infD00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9461 | 23 | 357 | 3.20.20.210 |
| 2ejaB00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9399 | 25 | 358 | 3.20.20.210 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A6G3VGF9-F1-model_v4 | deleted | 0.994 | 116 | 254 |
|
| AF-A0A3D0ZI14-F1-model_v4 | Uroporphyrinogen decarboxylase | 0.9926 | 59 | 217 |
GO:0004853
GO:0005829 GO:0006783 |
| AF-A0A829PX15-F1-model_v4 | Uroporphyrinogen decarboxylase (EC 4.1.1.37) | 0.9895 | 41 | 267 |
GO:0004853
GO:0005829 GO:0006783 |
| AF-A0A2L0UJ78-F1-model_v4 | uroporphyrinogen decarboxylase (EC 4.1.1.37) | 0.989 | 21 | 285 |
GO:0004853
GO:0005829 GO:0006782 |
| AF-X8CJJ3-F1-model_v4 | Uroporphyrinogen decarboxylase (EC 4.1.1.37) | 0.9887 | 47 | 229 |
GO:0004853
GO:0005829 GO:0006783 |