F291388

General Info

Members Datasets Scaffolds Average Seq Length
189 128 378 560

Family's Representative Sequence

Representative Sequence 3300046472|Ga0495580_0030822|Ga0495580_0030822_1166_3049
Length 627
Sequence LILFQFYQILQGVLSRYDSSARAKAYVYTAGCRSLIPSAESYFRTRPAAWVFFFSEFGWGRVNSQALNFWGMSNMRTWTSLIVAVVFCSMPLAAQQRAVPTSGALEQVISKVTSREKQEMQMIRQHSPLVETYIQKVKVTENDGSWVPDGDHYFIGRADFAKGLEVKPLPSPGDDGIHHMVGNLTRLFDFGTEFLPQGFLQMIYMDNNGLDTQNYDFDYVRREFMGEVRTLVFDITPKKKAGKGRFIGRIWVEDQDFTIVRFNGSFTGHEFTNLNFHFDSWRVNAGPNLWLPAFIYSEQNASALPFSKGPGYKAQTRLWAYDAGQSRRQQELSQVIIESKSPVIDQAQKNNDTSPVEAQRDWFEQAQGNVIEKLEKAGLVAPKGEVDKILATVVNNIEVTNNLDVQPEIQCRVLTTSTIESFSIGHTIVLSRGLIDVLPDEASLAAMLAKEMGYVLTNQKPVDTRFAFFDRLQFDDKKIFQHFDFTRKPEEDAAASAKATELLKNSPYKDQLGTAEMFISELQDRGRQIPNLISPRVGDVALLKLPVAAKTQAADAARHIVALPLGGRIKMDPWDDSVALLKSKPVGTVTDREKLPFEVTPFVIYLTRVGSDVPKASQLATPQHSGN

Samples

Sample ID Description Type Environment
1 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
2 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
3 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
4 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
5 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
16 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
17 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
23 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
24 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
25 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
26 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
27 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
31 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
32 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
33 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300019161 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA2 metaT (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
39 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
40 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
41 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
42 3300023672 Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
43 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
44 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
45 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
60 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
63 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
64 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
65 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
66 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
67 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
68 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
69 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
70 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
71 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
72 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
73 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
74 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
75 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
76 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
77 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
78 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
79 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
82 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
83 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
86 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
87 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
88 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
89 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
90 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
91 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
92 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
93 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
94 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
95 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
96 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
97 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
98 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
99 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
100 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
101 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
102 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
103 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
104 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
105 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
106 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
107 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
108 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
109 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
110 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
111 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
112 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
113 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
114 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
115 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
116 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
117 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
118 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
119 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
120 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
121 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
122 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
123 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
124 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
125 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
126 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
127 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
128 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.3
Metatranscriptomes 3.7
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 4.23
Rhizosphere 93.12
Stem 0
Stem Tuber 0
Unclassified 17.46

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495580_0030822 3300046472 Bacteria 3880
2 Ga0070680_100059313 3300005336 Bacteria 3130
3 Ga0070709_10011591 3300005434 Bacteria 4917
4 Ga0070709_10015281 3300005434 Unclassified 4365
5 Ga0070713_100007356 3300005436 Bacteria 7718
6 Ga0070711_100005456 3300005439 Bacteria 7606
7 Ga0070711_100105006 3300005439 Bacteria 2062
8 Ga0070694_100005301 3300005444 Bacteria 7799
9 Ga0070708_100005069 3300005445 Bacteria 10426
10 Ga0070708_100017248 3300005445 Bacteria 6016
11 Ga0070708_100073721 3300005445 Unclassified 3077
12 Ga0070708_100117347 3300005445 Bacteria 2451
13 Ga0070681_10127182 3300005458 Bacteria 2481
14 Ga0070706_100016869 3300005467 Bacteria 6745
15 Ga0070706_100032576 3300005467 Bacteria 4807
16 Ga0070707_100002439 3300005468 Bacteria 17713
17 Ga0070707_100003064 3300005468 Bacteria 15836
18 Ga0070707_100004730 3300005468 Bacteria 12760
19 Ga0070707_100106157 3300005468 Bacteria 2724
20 Ga0070698_100023778 3300005471 Bacteria 6399
21 Ga0070698_100030495 3300005471 Bacteria 5590
22 Ga0070699_100048394 3300005518 Bacteria 3680
23 Ga0070679_100016451 3300005530 Bacteria 7135
24 Ga0070697_100003365 3300005536 Bacteria 12291
25 Ga0070697_100003551 3300005536 Bacteria 11978
26 Ga0070697_100010017 3300005536 Bacteria 7394
27 Ga0070697_100027036 3300005536 Bacteria 4588
28 Ga0070695_100000288 3300005545 Bacteria 25405
29 Ga0070696_100019646 3300005546 Unclassified 4577
30 Ga0070693_100000260 3300005547 Bacteria 24782
31 Ga0070665_100007679 3300005548 Bacteria 10957
32 Ga0070704_100000550 3300005549 Bacteria 17981
33 Ga0068863_100123850 3300005841 Bacteria 2466
34 Ga0068860_100006993 3300005843 Bacteria 11304
35 Ga0070716_100001942 3300006173 Bacteria 9396
36 Ga0075434_100013652 3300006871 Bacteria 7742
37 Ga0075436_100001265 3300006914 Bacteria 17164
38 Ga0075436_100005626 3300006914 Bacteria 8600
39 Ga0075435_100165123 3300007076 Unclassified 1867
40 Ga0099794_10001229 3300007265 Bacteria 8825
41 Ga0099794_10004011 3300007265 Bacteria 5721
42 Ga0099794_10017770 3300007265 Bacteria 3176
43 Ga0099794_10019378 3300007265 Bacteria 3064
44 Ga0099794_10060936 3300007265 Bacteria 1833
45 Ga0099795_10009261 3300007788 Unclassified 2849
46 Ga0105240_10037042 3300009093 Bacteria 6270
47 Ga0111539_10154806 3300009094 Bacteria 2682
48 Ga0105245_10016480 3300009098 Bacteria 6448
49 Ga0105248_10025581 3300009177 Bacteria 6563
50 Ga0105237_10176863 3300009545 Bacteria 2134
51 Ga0099796_10007861 3300010159 Bacteria 2810
52 Ga0157369_10212541 3300013105 Bacteria 2027
53 Ga0157374_10026814 3300013296 Bacteria 5189
54 Ga0157374_10150048 3300013296 Bacteria 2266
55 Ga0157378_10000044 3300013297 Bacteria 106822
56 Ga0157378_10001034 3300013297 Bacteria 25395
57 Ga0157378_10002584 3300013297 Bacteria 16106
58 Ga0157372_10167142 3300013307 Unclassified 2544
59 Ga0184602_128051 3300019161 Bacteria 1926
60 Ga0206350_10103180 3300020080 Bacteria 3008
61 Ga0213876_10021603 3300021384 Unclassified 3404
62 Ga0213875_10016540 3300021388 Bacteria 3574
63 Ga0247553_100127 3300023672 Unclassified 2235
64 Ga0224572_1000784 3300024225 Bacteria 4189
65 Ga0228598_1000338 3300024227 Bacteria 9225
66 Ga0207699_10006122 3300025906 Bacteria 5801
67 Ga0207699_10011931 3300025906 Unclassified 4404
68 Ga0207684_10015116 3300025910 Bacteria 6646
69 Ga0207684_10018864 3300025910 Bacteria 5899
70 Ga0207693_10149304 3300025915 Unclassified 1838
71 Ga0207660_10043838 3300025917 Bacteria 3145
72 Ga0207652_10011806 3300025921 Bacteria 7049
73 Ga0207646_10000548 3300025922 Bacteria 49427
74 Ga0207646_10000572 3300025922 Bacteria 48197
75 Ga0207646_10001603 3300025922 Bacteria 27608
76 Ga0207646_10036590 3300025922 Bacteria 4430
77 Ga0207646_10072247 3300025922 Unclassified 3082
78 Ga0207646_10127028 3300025922 Bacteria 2293
79 Ga0207700_10030507 3300025928 Bacteria 3820
80 Ga0207665_10000023 3300025939 Bacteria 104745
81 Ga0207711_10044966 3300025941 Unclassified 3772
82 Ga0207641_10188950 3300026088 Bacteria 1892
83 Ga0209588_1001839 3300027671 Bacteria 5653
84 Ga0265354_1000455 3300028016 Bacteria 7103
85 Ga0265354_1002367 3300028016 Bacteria 2354
86 Ga0268266_10000444 3300028379 Bacteria 61604
87 Ga0268264_10004923 3300028381 Bacteria 11317
88 Ga0265338_10044277 3300028800 Bacteria 4112
89 Ga0265770_1000511 3300030878 Bacteria 5403
90 Ga0265760_10004699 3300031090 Bacteria 3910
91 Ga0265760_10006908 3300031090 Bacteria 3254
92 Ga0265760_10008102 3300031090 Bacteria 3002
93 Ga0265325_10002372 3300031241 Bacteria 12736
94 Ga0265325_10010974 3300031241 Bacteria 5218
95 Ga0265339_10011631 3300031249 Bacteria 5408
96 Ga0265316_10116426 3300031344 Unclassified 2020
97 Ga0265314_10022748 3300031711 Unclassified 4797
98 Ga0373926_0001221 3300035083 Bacteria 7729
99 Ga0373926_0021011 3300035083 Bacteria 2258
100 Ga0373923_0008598 3300035111 Bacteria 3651
101 Ga0373953_0020630 3300035117 Unclassified 2464
102 Ga0373954_0000903 3300035118 Bacteria 11536
103 Ga0373956_0008844 3300035119 Bacteria 4080
104 Ga0373957_0000820 3300035120 Bacteria 8123
105 Ga0373955_0000159 3300035172 Bacteria 27173
106 Ga0373955_0006046 3300035172 Bacteria 5493
107 Ga0373935_0018218 3300035692 Unclassified 4270
108 Ga0373927_0000264 3300035695 Bacteria 41466
109 Ga0373927_0034148 3300035695 Bacteria 3309
110 Ga0373933_0001856 3300035724 Bacteria 12223
111 Ga0373933_0003942 3300035724 Bacteria 8194
112 Ga0373947_0022251 3300035725 Bacteria 3674
113 Ga0373937_0000173 3300036401 Bacteria 63077
114 Ga0373937_0002092 3300036401 Bacteria 16701
115 Ga0373937_0006518 3300036401 Bacteria 10077
116 Ga0373937_0048254 3300036401 Unclassified 3897
117 Ga0373925_0000415 3300037068 Bacteria 43312
118 Ga0373925_0053679 3300037068 Bacteria 3013
119 Ga0436364_1209908 3300037853 Bacteria 7598
120 Ga0436365_0460715 3300039437 Bacteria 8106
121 Ga0436363_0936353 3300039450 Bacteria 5367
122 Ga0451577_0009518 3300042876 Bacteria 9351
123 Ga0451577_0123875 3300042876 Bacteria 2316
124 Ga0453683_0001078 3300044673 Bacteria 25202
125 Ga0453683_0003722 3300044673 Bacteria 11134
126 Ga0453683_0003753 3300044673 Bacteria 11083
127 Ga0453684_0024681 3300044712 Bacteria 8769
128 Ga0466957_0053734 3300044842 Unclassified 2457
129 Ga0451576_0035538 3300045051 Bacteria 5285
130 Ga0495592_0061829 3300046454 Bacteria 2751
131 Ga0495629_0008485 3300046459 Bacteria 7566
132 Ga0495651_0063148 3300046462 Bacteria 2831
133 Ga0495653_0001584 3300046463 Bacteria 17859
134 Ga0495580_0006257 3300046472 Bacteria 9735
135 Ga0495580_0010799 3300046472 Bacteria 7092
136 Ga0495582_0021594 3300046473 Unclassified 3521
137 Ga0495594_0015750 3300046499 Unclassified 3976
138 Ga0495608_0025164 3300046511 Unclassified 4063
139 Ga0495628_0009997 3300046516 Bacteria 8073
140 Ga0495628_0108246 3300046516 Bacteria 2140
141 Ga0495630_0019926 3300046517 Bacteria 4937
142 Ga0495630_0027139 3300046517 Bacteria 4245
143 Ga0495666_0017180 3300046526 Bacteria 3603
144 Ga0495652_0016020 3300046529 Bacteria 6707
145 Ga0495652_0050587 3300046529 Bacteria 3552
146 Ga0495640_0016969 3300046533 Bacteria 5436
147 Ga0495640_0034342 3300046533 Unclassified 3598
148 Ga0495586_0000188 3300046535 Bacteria 41011
149 Ga0495587_0000053 3300046536 Bacteria 99889
150 Ga0495587_0010235 3300046536 Bacteria 5979
151 Ga0495645_0006657 3300046543 Bacteria 8026
152 Ga0495667_0002758 3300046559 Bacteria 11732
153 Ga0495667_0103844 3300046559 Unclassified 1838
154 Ga0495635_0022846 3300046663 Unclassified 4359
155 Ga0495623_0009383 3300046679 Bacteria 6355
156 Ga0495646_0001579 3300046680 Bacteria 13589
157 Ga0495647_0032563 3300046681 Bacteria 1943
158 Ga0495658_0010173 3300046683 Unclassified 4702
159 Ga0495613_0031946 3300046689 Unclassified 3910
160 Ga0495613_0067168 3300046689 Bacteria 2617
161 Ga0495624_0028811 3300046690 Bacteria 3625
162 Ga0495624_0061142 3300046690 Bacteria 2361
163 Ga0495600_0029688 3300046809 Bacteria 3541
164 Ga0495604_0013754 3300047317 Bacteria 6452
165 Ga0495604_0014431 3300047317 Bacteria 6301
166 Ga0495604_0092272 3300047317 Bacteria 2244
167 Ga0495674_0065099 3300047319 Bacteria 3167
168 Ga0495674_0072671 3300047319 Unclassified 2966
169 Ga0495674_0109732 3300047319 Bacteria 2340
170 Ga0495680_0000879 3300047322 Bacteria 33399
171 Ga0495675_0001322 3300047444 Bacteria 15015
172 Ga0495684_0000152 3300047471 Bacteria 51013
173 Ga0495593_0001130 3300047673 Bacteria 15532
174 Ga0495602_0000304 3300048088 Bacteria 45402
175 Ga0495602_0022000 3300048088 Bacteria 6253
176 Ga0495602_0034104 3300048088 Unclassified 4766
177 Ga0496100_0041585 3300048903 Unclassified 2931
178 Ga0496101_0027368 3300048904 Unclassified 3972
179 Ga0496102_0017882 3300048905 Bacteria 6217
180 Ga0496103_0026391 3300048906 Bacteria 3517
181 Ga0496104_0102307 3300048907 Bacteria 2744
182 Ga0496106_0100701 3300048909 Unclassified 2240
183 Ga0496112_0165855 3300048915 Bacteria 2175
184 Ga0496115_0081999 3300048918 Unclassified 2627
185 nmdc:mga0n895_4898_c1 3300050512 Bacteria 11095
186 nmdc:mga08x19_2231_c1 3300050514 Bacteria 11833
187 nmdc:mga08x19_267_c1 3300050514 Bacteria 39505
188 nmdc:mga08x19_386_c1 3300050514 Bacteria 30958
189 Ga0495612_0006310 3300053078 Unclassified 4887
190 Ga0495580_0030822
191 Ga0070680_100059313
192 Ga0070709_10011591
193 Ga0070709_10015281
194 Ga0070713_100007356
195 Ga0070711_100005456
196 Ga0070711_100105006
197 Ga0070694_100005301
198 Ga0070708_100005069
199 Ga0070708_100017248
200 Ga0070708_100073721
201 Ga0070708_100117347
202 Ga0070681_10127182
203 Ga0070706_100016869
204 Ga0070706_100032576
205 Ga0070707_100002439
206 Ga0070707_100003064
207 Ga0070707_100004730
208 Ga0070707_100106157
209 Ga0070698_100023778
210 Ga0070698_100030495
211 Ga0070699_100048394
212 Ga0070679_100016451
213 Ga0070697_100003365
214 Ga0070697_100003551
215 Ga0070697_100010017
216 Ga0070697_100027036
217 Ga0070695_100000288
218 Ga0070696_100019646
219 Ga0070693_100000260
220 Ga0070665_100007679
221 Ga0070704_100000550
222 Ga0068863_100123850
223 Ga0068860_100006993
224 Ga0070716_100001942
225 Ga0075434_100013652
226 Ga0075436_100001265
227 Ga0075436_100005626
228 Ga0075435_100165123
229 Ga0099794_10001229
230 Ga0099794_10004011
231 Ga0099794_10017770
232 Ga0099794_10019378
233 Ga0099794_10060936
234 Ga0099795_10009261
235 Ga0105240_10037042
236 Ga0111539_10154806
237 Ga0105245_10016480
238 Ga0105248_10025581
239 Ga0105237_10176863
240 Ga0099796_10007861
241 Ga0157369_10212541
242 Ga0157374_10026814
243 Ga0157374_10150048
244 Ga0157378_10000044
245 Ga0157378_10001034
246 Ga0157378_10002584
247 Ga0157372_10167142
248 Ga0184602_128051
249 Ga0206350_10103180
250 Ga0213876_10021603
251 Ga0213875_10016540
252 Ga0247553_100127
253 Ga0224572_1000784
254 Ga0228598_1000338
255 Ga0207699_10006122
256 Ga0207699_10011931
257 Ga0207684_10015116
258 Ga0207684_10018864
259 Ga0207693_10149304
260 Ga0207660_10043838
261 Ga0207652_10011806
262 Ga0207646_10000548
263 Ga0207646_10000572
264 Ga0207646_10001603
265 Ga0207646_10036590
266 Ga0207646_10072247
267 Ga0207646_10127028
268 Ga0207700_10030507
269 Ga0207665_10000023
270 Ga0207711_10044966
271 Ga0207641_10188950
272 Ga0209588_1001839
273 Ga0265354_1000455
274 Ga0265354_1002367
275 Ga0268266_10000444
276 Ga0268264_10004923
277 Ga0265338_10044277
278 Ga0265770_1000511
279 Ga0265760_10004699
280 Ga0265760_10006908
281 Ga0265760_10008102
282 Ga0265325_10002372
283 Ga0265325_10010974
284 Ga0265339_10011631
285 Ga0265316_10116426
286 Ga0265314_10022748
287 Ga0373926_0001221
288 Ga0373926_0021011
289 Ga0373923_0008598
290 Ga0373953_0020630
291 Ga0373954_0000903
292 Ga0373956_0008844
293 Ga0373957_0000820
294 Ga0373955_0000159
295 Ga0373955_0006046
296 Ga0373935_0018218
297 Ga0373927_0000264
298 Ga0373927_0034148
299 Ga0373933_0001856
300 Ga0373933_0003942
301 Ga0373947_0022251
302 Ga0373937_0000173
303 Ga0373937_0002092
304 Ga0373937_0006518
305 Ga0373937_0048254
306 Ga0373925_0000415
307 Ga0373925_0053679
308 Ga0436364_1209908
309 Ga0436365_0460715
310 Ga0436363_0936353
311 Ga0451577_0009518
312 Ga0451577_0123875
313 Ga0453683_0001078
314 Ga0453683_0003722
315 Ga0453683_0003753
316 Ga0453684_0024681
317 Ga0466957_0053734
318 Ga0451576_0035538
319 Ga0495592_0061829
320 Ga0495629_0008485
321 Ga0495651_0063148
322 Ga0495653_0001584
323 Ga0495580_0006257
324 Ga0495580_0010799
325 Ga0495582_0021594
326 Ga0495594_0015750
327 Ga0495608_0025164
328 Ga0495628_0009997
329 Ga0495628_0108246
330 Ga0495630_0019926
331 Ga0495630_0027139
332 Ga0495666_0017180
333 Ga0495652_0016020
334 Ga0495652_0050587
335 Ga0495640_0016969
336 Ga0495640_0034342
337 Ga0495586_0000188
338 Ga0495587_0000053
339 Ga0495587_0010235
340 Ga0495645_0006657
341 Ga0495667_0002758
342 Ga0495667_0103844
343 Ga0495635_0022846
344 Ga0495623_0009383
345 Ga0495646_0001579
346 Ga0495647_0032563
347 Ga0495658_0010173
348 Ga0495613_0031946
349 Ga0495613_0067168
350 Ga0495624_0028811
351 Ga0495624_0061142
352 Ga0495600_0029688
353 Ga0495604_0013754
354 Ga0495604_0014431
355 Ga0495604_0092272
356 Ga0495674_0065099
357 Ga0495674_0072671
358 Ga0495674_0109732
359 Ga0495680_0000879
360 Ga0495675_0001322
361 Ga0495684_0000152
362 Ga0495593_0001130
363 Ga0495602_0000304
364 Ga0495602_0022000
365 Ga0495602_0034104
366 Ga0496100_0041585
367 Ga0496101_0027368
368 Ga0496102_0017882
369 Ga0496103_0026391
370 Ga0496104_0102307
371 Ga0496106_0100701
372 Ga0496112_0165855
373 Ga0496115_0081999
374 nmdc:mga0n895_4898_c1
375 nmdc:mga08x19_2231_c1
376 nmdc:mga08x19_267_c1
377 nmdc:mga08x19_386_c1
378 Ga0495612_0006310

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ait-assembly1.cif.gz_C crystal structure of e. coli bepa 0.7302 283 479
6sar-assembly1.cif.gz_A e coli bepa/yfgc 0.7193 282 478
6ait-assembly1.cif.gz_F crystal structure of e. coli bepa 0.7075 284 478
6ait-assembly1.cif.gz_B crystal structure of e. coli bepa 0.6994 283 479
3c37-assembly1.cif.gz_A x-ray structure of the putative zn-dependent peptidase q74d82 at the resolution 1.7 a. northeast structural genomics consortium target gsr143a 0.6275 284 479
ID Description Score Start End Superfamily
4jiuA00 "Alpha Beta;2-Layer Sandwich;Zincin-like;Metalloproteases (""zincins""), catalytic domain" 0.556 314 434 3.30.2010.10
af_Q9Z108_194_270_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.5537 138 183 3.30.160.20
4jiuA00 "Alpha Beta;2-Layer Sandwich;Zincin-like;Metalloproteases (""zincins""), catalytic domain" 0.5293 314 434 3.30.2010.10
af_Q9VHB0_795_873_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.5211 141 166 3.30.160.20
af_Q4DE76_18_209_3.10.20.550 Alpha Beta;Roll;Ubiquitin-like (UB roll);ASAP complex, SAP18 subunit 0.5162 47 106 3.10.20.550
ID Description Score Start End GO Terms
AF-A0A2V9DBD6-F1-model_v4 Peptidase M48 domain-containing protein 0.8949 128 546 GO:0004222
GO:0006508
GO:0046872
AF-A0A2V9Q3B6-F1-model_v4 Peptidase M48 domain-containing protein 0.8942 30 541 GO:0004222
GO:0006508
GO:0046872
AF-A0A2V9YC67-F1-model_v4 Peptidase M48 domain-containing protein 0.89 32 541 GO:0004222
GO:0006508
GO:0046872
AF-A0A2V9RT20-F1-model_v4 Peptidase M48 domain-containing protein 0.8851 30 376
AF-A0A2V9GZ73-F1-model_v4 Peptidase M48 domain-containing protein 0.8709 159 566 GO:0004222
GO:0006508
GO:0046872

Map