F290488

General Info

Members Datasets Scaffolds Average Seq Length
189 118 378 1133

Family's Representative Sequence

Representative Sequence 3300005406|Ga0070703_10001552|Ga0070703_100015523
Length 1254
Sequence MRKLQSVGLSILCAMLLALLCGANAAWAQDVTATITGTITDPSGAPIVGATVTAHDTDRGTAWTSVTNEAGIYNIIRVPIGNYDLKVEAKGFQTAVHAPFTLVLNQTARIDVAMTIGAVSATVEVKGDAPLLQTESTEVSSIVDAHTITTLPLAARNYVQLSLLSPGATTVNPSSLSQPQLMTGAGRPDINGNREQAVGFLLDGIVNQEKKNDEVAYMPNVDAIQEFNIVTQNPGADFGNYAGGVISVSIKSGTNSFHGDVFEFLRNDFMNSNSKTSAWATGKVQPTPTLRYNMFGGTVGGPIIKDKLFFFGDYQGMRIPSSSTQHAQLFTQRERAGDFGQLCTQLPAASGPGTFNGAGICSNPAGQLVDPKNGNAPIPFNKMSNSTLAESAFATALFADTKNYPLPTSDLAYGDNSSFSAGNHFNSDQGDLKIDYKPSDKDSVFGRFSKFDTSQAVFTGLPFANAGAAEGTDQPGWSASANWTHALTHTILNEARVGVNVFRFNQNQTPTTSLGNISEQLGIAGANAQAPGLVQISIPTGPGGNASLGLINLWQIFRDTEIQAEDNLIISRGRHTFKTGFQFIRERNNYVYPGNEGVLGNIAISSATGVNGANIILPNATAPCGGGCQTGLADFWAGITTSGGFRDSGSATVQGLRGSVFGGYFQDDWKIKPTITLNLGIRFEDHTPQYEDHNHVVNFGLQSGAIQTVVPGASGYSDRALYNNYTGLGDWNPRIGVAWSPRFMHGKTVVRAAYGSSSYMEGGGSNEELSLNLPFGNFESTYPTGIGSLGQPWQSAPPCPAPQFSCYAGSRIRIFDQNFRPALIQQWNLTIQQQFSNTLTFQIGYVGQKGSHLLNFEDVAQREGLNAAGTLALPGQQIVAEAAGPFLGGLGGPCTFNQKGGGVFGTPTAGTVTYAGTWNCGTAGSLYQADSGGNGFSSFGALAGANMSNSNQRYDGLQAVLKERGYHGLDGQLAYTYSKCLSNSPGYFGTGWGSTGAQSSGGQPGWENIYNPQADWGPCYYDQTHIFTGYFTYQLPIGRGKQFGHDANPVVNAIIGNWQISGILTLHSGNALTLNDFGGWSAYGDHSGTNSIGPYTLANLPNCNGPIAIDNKFVPFSGGVPAHIQWFNTSNISPVPNANVLTTYTNTGTVAAPIAGALIGSPATGGGSFGTCSVGNIRGPWTKILDTSLQKDISIGEKRTIQFRLDALNAFNHPIWTFSGGPAGGSFDSGSASLGQITGSQGARQLQLALKFIF

Samples

Sample ID Description Type Environment
1 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
2 3300000546 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Metagenome Rhizosphere
3 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
19 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
20 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
33 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
34 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
35 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
36 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
37 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
56 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
60 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
61 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
62 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
87 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
89 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
90 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
91 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
92 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
93 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
94 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
95 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
96 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
97 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
98 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
101 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
102 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
110 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
111 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
112 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
113 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
116 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
117 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
118 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.3
Metatranscriptomes 3.7
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.17
Rhizosphere 94.71
Stem 0
Stem Tuber 0
Unclassified 2.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070703_10001552 3300005406 Bacteria 6839
2 LJNas_1000148 3300000546 Bacteria 11211
3 Ga0058861_11866821 3300004800 Bacteria 3723
4 Ga0070670_100004401 3300005331 Bacteria 11794
5 Ga0068869_100002316 3300005334 Bacteria 11460
6 Ga0068868_100012445 3300005338 Bacteria 6221
7 Ga0070661_100017537 3300005344 Bacteria 5081
8 Ga0070713_100000051 3300005436 Bacteria 73697
9 Ga0070713_100029529 3300005436 Bacteria 4344
10 Ga0070711_100000266 3300005439 Bacteria 26896
11 Ga0070711_100001498 3300005439 Bacteria 12834
12 Ga0070711_100010728 3300005439 Bacteria 5678
13 Ga0070705_100000567 3300005440 Bacteria 21398
14 Ga0070708_100000297 3300005445 Bacteria 37367
15 Ga0070708_100013929 3300005445 Bacteria 6605
16 Ga0070706_100001561 3300005467 Bacteria 23916
17 Ga0070707_100002360 3300005468 Bacteria 18011
18 Ga0070698_100000150 3300005471 Bacteria 63199
19 Ga0070698_100000490 3300005471 Bacteria 42081
20 Ga0070699_100000419 3300005518 Bacteria 40730
21 Ga0070699_100002958 3300005518 Bacteria 15099
22 Ga0070679_100033259 3300005530 Bacteria 5105
23 Ga0070697_100000781 3300005536 Bacteria 23901
24 Ga0070697_100001771 3300005536 Bacteria 16482
25 Ga0070695_100001439 3300005545 Bacteria 13203
26 Ga0070696_100000455 3300005546 Bacteria 25623
27 Ga0070693_100000054 3300005547 Bacteria 43910
28 Ga0070665_100006351 3300005548 Bacteria 12058
29 Ga0070704_100007609 3300005549 Bacteria 6456
30 Ga0068855_100000882 3300005563 Bacteria 37173
31 Ga0068855_100003555 3300005563 Bacteria 19055
32 Ga0068855_100017271 3300005563 Bacteria 8684
33 Ga0068855_100023455 3300005563 Bacteria 7391
34 Ga0068854_100011642 3300005578 Bacteria 5737
35 Ga0068856_100000440 3300005614 Bacteria 45782
36 Ga0068856_100000879 3300005614 Bacteria 32149
37 Ga0068856_100001553 3300005614 Bacteria 24037
38 Ga0068856_100033292 3300005614 Bacteria 5045
39 Ga0068856_100038254 3300005614 Bacteria 4709
40 Ga0068852_100020502 3300005616 Bacteria 5258
41 Ga0068859_100029549 3300005617 Bacteria 5500
42 Ga0068864_100001597 3300005618 Bacteria 18682
43 Ga0068863_100004052 3300005841 Bacteria 14468
44 Ga0068858_100006077 3300005842 Bacteria 11776
45 Ga0068858_100008168 3300005842 Bacteria 10063
46 Ga0068860_100013348 3300005843 Bacteria 8054
47 Ga0081540_1005086 3300005983 Bacteria 9865
48 Ga0070717_10001129 3300006028 Bacteria 18066
49 Ga0070717_10004891 3300006028 Bacteria 9748
50 Ga0070717_10038540 3300006028 Unclassified 3886
51 Ga0070715_10000127 3300006163 Bacteria 18050
52 Ga0070716_100000368 3300006173 Bacteria 18532
53 Ga0070716_100000457 3300006173 Bacteria 16917
54 Ga0070712_100000011 3300006175 Bacteria 127295
55 Ga0070712_100005606 3300006175 Bacteria 7772
56 Ga0070712_100017052 3300006175 Bacteria 4696
57 Ga0097621_100000084 3300006237 Bacteria 50322
58 Ga0097621_100007240 3300006237 Bacteria 7922
59 Ga0068871_100011871 3300006358 Bacteria 6407
60 Ga0068871_100016372 3300006358 Bacteria 5583
61 Ga0075433_10020000 3300006852 Bacteria 5592
62 Ga0075434_100000884 3300006871 Bacteria 23983
63 Ga0075434_100002232 3300006871 Bacteria 16919
64 Ga0075434_100049178 3300006871 Unclassified 4185
65 Ga0068865_100005157 3300006881 Bacteria 7907
66 Ga0097620_100029550 3300006931 Bacteria 5500
67 Ga0099794_10005268 3300007265 Bacteria 5174
68 Ga0099794_10008553 3300007265 Bacteria 4259
69 Ga0105240_10035637 3300009093 Bacteria 6410
70 Ga0105240_10065046 3300009093 Bacteria 4528
71 Ga0105245_10015887 3300009098 Bacteria 6559
72 Ga0105245_10029284 3300009098 Bacteria 4863
73 Ga0114129_10053150 3300009147 Bacteria 5681
74 Ga0105241_10001492 3300009174 Bacteria 17937
75 Ga0105241_10025201 3300009174 Bacteria 4420
76 Ga0105241_10026999 3300009174 Bacteria 4273
77 Ga0105241_10027663 3300009174 Bacteria 4223
78 Ga0105242_10005400 3300009176 Bacteria 9884
79 Ga0105248_10011280 3300009177 Bacteria 9857
80 Ga0105248_10014126 3300009177 Bacteria 8789
81 Ga0105237_10013147 3300009545 Bacteria 8685
82 Ga0105237_10033398 3300009545 Bacteria 5212
83 Ga0105238_10000750 3300009551 Bacteria 33737
84 Ga0105239_10004439 3300010375 Bacteria 16770
85 Ga0105239_10026851 3300010375 Bacteria 6337
86 Ga0105239_10040771 3300010375 Bacteria 5087
87 Ga0157369_10010628 3300013105 Bacteria 10477
88 Ga0157374_10000712 3300013296 Bacteria 29149
89 Ga0157374_10006128 3300013296 Bacteria 10182
90 Ga0157374_10042033 3300013296 Bacteria 4215
91 Ga0157378_10000106 3300013297 Bacteria 79497
92 Ga0157378_10000358 3300013297 Bacteria 44918
93 Ga0157378_10000647 3300013297 Bacteria 32754
94 Ga0157378_10001897 3300013297 Bacteria 18769
95 Ga0157378_10016983 3300013297 Bacteria 6381
96 Ga0157378_10019154 3300013297 Bacteria 6014
97 Ga0163162_10008372 3300013306 Bacteria 10083
98 Ga0157372_10000068 3300013307 Bacteria 111270
99 Ga0157372_10000457 3300013307 Bacteria 44852
100 Ga0157372_10036262 3300013307 Bacteria 5434
101 Ga0157372_10059020 3300013307 Bacteria 4290
102 Ga0157375_10002577 3300013308 Bacteria 15745
103 Ga0206352_10292813 3300020078 Bacteria 4837
104 Ga0206350_10800908 3300020080 Bacteria 3465
105 Ga0213872_10002322 3300021361 Bacteria 11321
106 Ga0207656_10001904 3300025321 Bacteria 6946
107 Ga0207647_10013107 3300025904 Bacteria 5759
108 Ga0207645_10007500 3300025907 Bacteria 7698
109 Ga0207684_10000486 3300025910 Bacteria 50899
110 Ga0207684_10001504 3300025910 Bacteria 24985
111 Ga0207654_10000513 3300025911 Bacteria 22210
112 Ga0207654_10012988 3300025911 Bacteria 4275
113 Ga0207695_10000166 3300025913 Bacteria 195439
114 Ga0207695_10013927 3300025913 Bacteria 9560
115 Ga0207695_10036934 3300025913 Bacteria 5275
116 Ga0207695_10044368 3300025913 Bacteria 4729
117 Ga0207693_10000008 3300025915 Bacteria 171049
118 Ga0207693_10020025 3300025915 Bacteria 5322
119 Ga0207663_10000188 3300025916 Bacteria 27447
120 Ga0207663_10002424 3300025916 Bacteria 8955
121 Ga0207649_10018327 3300025920 Bacteria 3979
122 Ga0207646_10001046 3300025922 Bacteria 35279
123 Ga0207646_10001896 3300025922 Bacteria 25176
124 Ga0207694_10000123 3300025924 Bacteria 82152
125 Ga0207694_10036524 3300025924 Bacteria 3771
126 Ga0207700_10000072 3300025928 Bacteria 62470
127 Ga0207665_10000061 3300025939 Bacteria 70024
128 Ga0207665_10000509 3300025939 Bacteria 26239
129 Ga0207665_10015649 3300025939 Bacteria 4978
130 Ga0207665_10026894 3300025939 Bacteria 3800
131 Ga0207711_10009174 3300025941 Bacteria 8264
132 Ga0207689_10000188 3300025942 Bacteria 53702
133 Ga0207667_10002887 3300025949 Bacteria 21331
134 Ga0207667_10003624 3300025949 Bacteria 19055
135 Ga0207667_10010373 3300025949 Bacteria 10888
136 Ga0207667_10058376 3300025949 Bacteria 4047
137 Ga0207640_10008233 3300025981 Bacteria 5782
138 Ga0207703_10005707 3300026035 Bacteria 9984
139 Ga0207703_10007506 3300026035 Bacteria 8655
140 Ga0207639_10004767 3300026041 Bacteria 9139
141 Ga0207639_10006035 3300026041 Bacteria 8217
142 Ga0207702_10000757 3300026078 Bacteria 34330
143 Ga0207702_10001053 3300026078 Bacteria 28243
144 Ga0207702_10008466 3300026078 Bacteria 8675
145 Ga0207702_10032186 3300026078 Bacteria 4375
146 Ga0207641_10007442 3300026088 Bacteria 9108
147 Ga0207676_10005069 3300026095 Bacteria 9323
148 Ga0207683_10000515 3300026121 Bacteria 35701
149 Ga0207698_10000809 3300026142 Bacteria 18181
150 Ga0265354_1000024 3300028016 Bacteria 24424
151 Ga0268266_10021499 3300028379 Bacteria 5496
152 Ga0265762_1000363 3300030760 Bacteria 7750
153 Ga0265770_1000268 3300030878 Bacteria 6984
154 Ga0265760_10005402 3300031090 Unclassified 3667
155 Ga0265316_10014134 3300031344 Bacteria 7043
156 Ga0373954_0000945 3300035118 Bacteria 11331
157 Ga0436364_0497488 3300037853 Bacteria 10300
158 Ga0436365_0017210 3300039437 Bacteria 17141
159 Ga0436361_0696074 3300039447 Bacteria 5516
160 Ga0436361_1198733 3300039447 Bacteria 25448
161 Ga0436363_0353625 3300039450 Bacteria 6560
162 Ga0495580_0003044 3300046472 Bacteria 14356
163 Ga0495580_0007072 3300046472 Bacteria 9043
164 Ga0495580_0013789 3300046472 Bacteria 6155
165 Ga0495645_0008692 3300046543 Bacteria 7093
166 Ga0496112_0011309 3300048915 Bacteria 8144
167 Ga0496112_0017160 3300048915 Bacteria 6798
168 Ga0496112_0031427 3300048915 Bacteria 5149
169 Ga0496115_0001305 3300048918 Bacteria 17766
170 Ga0496115_0007939 3300048918 Bacteria 7831
171 Ga0496115_0028882 3300048918 Bacteria 4350
172 Ga0496126_0013117 3300048929 Bacteria 8452
173 Ga0501032_0010452 3300049569 Bacteria 6695
174 Ga0501036_0000631 3300049572 Bacteria 25707
175 Ga0501037_0003325 3300049573 Bacteria 11686
176 Ga0501038_0001956 3300049574 Bacteria 19011
177 Ga0501043_0002878 3300049579 Bacteria 14364
178 Ga0501046_0001484 3300049580 Bacteria 22472
179 Ga0501048_0005601 3300049582 Bacteria 9553
180 Ga0501068_0000175 3300049584 Bacteria 30038
181 Ga0501072_0002818 3300049588 Bacteria 13051
182 Ga0501077_0025390 3300049593 Bacteria 3763
183 Ga0501079_0001552 3300049741 Bacteria 16275
184 Ga0501080_0000754 3300049742 Bacteria 26219
185 nmdc:mga05p37_54564_c1 3300050507 Bacteria 4916
186 nmdc:mga0n895_1452_c1 3300050512 Bacteria 17719
187 nmdc:mga0a205_31889_c1 3300050515 Bacteria 5051
188 Ga0501084_0002448 3300054114 Bacteria 14934
189 Ga0587079_000427 3300059647 Unclassified 3646
190 Ga0070703_10001552
191 LJNas_1000148
192 Ga0058861_11866821
193 Ga0070670_100004401
194 Ga0068869_100002316
195 Ga0068868_100012445
196 Ga0070661_100017537
197 Ga0070713_100000051
198 Ga0070713_100029529
199 Ga0070711_100000266
200 Ga0070711_100001498
201 Ga0070711_100010728
202 Ga0070705_100000567
203 Ga0070708_100000297
204 Ga0070708_100013929
205 Ga0070706_100001561
206 Ga0070707_100002360
207 Ga0070698_100000150
208 Ga0070698_100000490
209 Ga0070699_100000419
210 Ga0070699_100002958
211 Ga0070679_100033259
212 Ga0070697_100000781
213 Ga0070697_100001771
214 Ga0070695_100001439
215 Ga0070696_100000455
216 Ga0070693_100000054
217 Ga0070665_100006351
218 Ga0070704_100007609
219 Ga0068855_100000882
220 Ga0068855_100003555
221 Ga0068855_100017271
222 Ga0068855_100023455
223 Ga0068854_100011642
224 Ga0068856_100000440
225 Ga0068856_100000879
226 Ga0068856_100001553
227 Ga0068856_100033292
228 Ga0068856_100038254
229 Ga0068852_100020502
230 Ga0068859_100029549
231 Ga0068864_100001597
232 Ga0068863_100004052
233 Ga0068858_100006077
234 Ga0068858_100008168
235 Ga0068860_100013348
236 Ga0081540_1005086
237 Ga0070717_10001129
238 Ga0070717_10004891
239 Ga0070717_10038540
240 Ga0070715_10000127
241 Ga0070716_100000368
242 Ga0070716_100000457
243 Ga0070712_100000011
244 Ga0070712_100005606
245 Ga0070712_100017052
246 Ga0097621_100000084
247 Ga0097621_100007240
248 Ga0068871_100011871
249 Ga0068871_100016372
250 Ga0075433_10020000
251 Ga0075434_100000884
252 Ga0075434_100002232
253 Ga0075434_100049178
254 Ga0068865_100005157
255 Ga0097620_100029550
256 Ga0099794_10005268
257 Ga0099794_10008553
258 Ga0105240_10035637
259 Ga0105240_10065046
260 Ga0105245_10015887
261 Ga0105245_10029284
262 Ga0114129_10053150
263 Ga0105241_10001492
264 Ga0105241_10025201
265 Ga0105241_10026999
266 Ga0105241_10027663
267 Ga0105242_10005400
268 Ga0105248_10011280
269 Ga0105248_10014126
270 Ga0105237_10013147
271 Ga0105237_10033398
272 Ga0105238_10000750
273 Ga0105239_10004439
274 Ga0105239_10026851
275 Ga0105239_10040771
276 Ga0157369_10010628
277 Ga0157374_10000712
278 Ga0157374_10006128
279 Ga0157374_10042033
280 Ga0157378_10000106
281 Ga0157378_10000358
282 Ga0157378_10000647
283 Ga0157378_10001897
284 Ga0157378_10016983
285 Ga0157378_10019154
286 Ga0163162_10008372
287 Ga0157372_10000068
288 Ga0157372_10000457
289 Ga0157372_10036262
290 Ga0157372_10059020
291 Ga0157375_10002577
292 Ga0206352_10292813
293 Ga0206350_10800908
294 Ga0213872_10002322
295 Ga0207656_10001904
296 Ga0207647_10013107
297 Ga0207645_10007500
298 Ga0207684_10000486
299 Ga0207684_10001504
300 Ga0207654_10000513
301 Ga0207654_10012988
302 Ga0207695_10000166
303 Ga0207695_10013927
304 Ga0207695_10036934
305 Ga0207695_10044368
306 Ga0207693_10000008
307 Ga0207693_10020025
308 Ga0207663_10000188
309 Ga0207663_10002424
310 Ga0207649_10018327
311 Ga0207646_10001046
312 Ga0207646_10001896
313 Ga0207694_10000123
314 Ga0207694_10036524
315 Ga0207700_10000072
316 Ga0207665_10000061
317 Ga0207665_10000509
318 Ga0207665_10015649
319 Ga0207665_10026894
320 Ga0207711_10009174
321 Ga0207689_10000188
322 Ga0207667_10002887
323 Ga0207667_10003624
324 Ga0207667_10010373
325 Ga0207667_10058376
326 Ga0207640_10008233
327 Ga0207703_10005707
328 Ga0207703_10007506
329 Ga0207639_10004767
330 Ga0207639_10006035
331 Ga0207702_10000757
332 Ga0207702_10001053
333 Ga0207702_10008466
334 Ga0207702_10032186
335 Ga0207641_10007442
336 Ga0207676_10005069
337 Ga0207683_10000515
338 Ga0207698_10000809
339 Ga0265354_1000024
340 Ga0268266_10021499
341 Ga0265762_1000363
342 Ga0265770_1000268
343 Ga0265760_10005402
344 Ga0265316_10014134
345 Ga0373954_0000945
346 Ga0436364_0497488
347 Ga0436365_0017210
348 Ga0436361_0696074
349 Ga0436361_1198733
350 Ga0436363_0353625
351 Ga0495580_0003044
352 Ga0495580_0007072
353 Ga0495580_0013789
354 Ga0495645_0008692
355 Ga0496112_0011309
356 Ga0496112_0017160
357 Ga0496112_0031427
358 Ga0496115_0001305
359 Ga0496115_0007939
360 Ga0496115_0028882
361 Ga0496126_0013117
362 Ga0501032_0010452
363 Ga0501036_0000631
364 Ga0501037_0003325
365 Ga0501038_0001956
366 Ga0501043_0002878
367 Ga0501046_0001484
368 Ga0501048_0005601
369 Ga0501068_0000175
370 Ga0501072_0002818
371 Ga0501077_0025390
372 Ga0501079_0001552
373 Ga0501080_0000754
374 nmdc:mga05p37_54564_c1
375 nmdc:mga0n895_1452_c1
376 nmdc:mga0a205_31889_c1
377 Ga0501084_0002448
378 Ga0587079_000427

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13620

CarboxypepD_reg

Carboxypeptidase regulatory-like domain

34

115

0.99

PF13715

CarbopepD_reg_2

CarboxypepD_reg-like domain

35

121

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
5aq0-assembly1.cif.gz_A the structure of the transthyretin-like domain of the first catalytic domain of the human carboxypeptidase d 0.865 33 115
4v4c-assembly3.cif.gz_F crystal structure of pyrogallol-phloroglucinol transhydroxylase from pelobacter acidigallici 0.8383 29 113
5aq0-assembly1.cif.gz_A the structure of the transthyretin-like domain of the first catalytic domain of the human carboxypeptidase d 0.8361 33 115
6fwv-assembly2.cif.gz_B the bacillus anthracis tie protein 0.818 29 114
6fwv-assembly1.cif.gz_A the bacillus anthracis tie protein 0.7894 29 114
ID Description Score Start End Superfamily
af_E7FFQ7_314_405_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.9073 33 115 2.60.40.1120
af_O94694_44_151_1.10.287.70 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.8931 48 94 1.10.287.70
af_O75976_383_462_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8797 33 115 2.60.40.1120
af_P42787_1224_1309_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8651 34 114 2.60.40.1120
af_O75976_383_462_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8595 33 115 2.60.40.1120
ID Description Score Start End GO Terms
AF-A0A7W1PAK6-F1-model_v4 TonB-dependent receptor 0.8813 395 1101 GO:0009279
GO:0015344
AF-A0A7W1PAK6-F1-model_v4 TonB-dependent receptor 0.8789 395 1101 GO:0009279
GO:0015344
AF-A0A2V9LXD9-F1-model_v4 TonB-dependent receptor-like beta-barrel domain-containing protein 0.8515 86 1101 GO:0005524
GO:0009279
GO:0015344
AF-A0A7X8UBJ4-F1-model_v4 TonB-dependent receptor 0.8512 203 1101 GO:0009279
GO:0015344
AF-A0A2V9LXD9-F1-model_v4 TonB-dependent receptor-like beta-barrel domain-containing protein 0.8498 86 1101 GO:0005524
GO:0009279
GO:0015344

Map