F290189

General Info

Members Datasets Scaffolds Average Seq Length
188 178 123 550

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2984580707|2984582302
Length 587
Sequence ELRGHPRRGAIAWSAPQWSGKARSTMGSLDIQGVSYTLPDGRPLLDEVTFRVGAGSTTALIGQNGAGKTTLLRIIRGDAAAHGGVVQIDGGLGVMDQFVGHGGAGETVHDLLISVAPERVRRAARELDDAENAVIASDELDTQMRYAAAIADYADAGGYEYETVWDTCTTAALGVPFERARYRELTTLSGGEQKRLALEALLRGPDEVLLLDEPDNYLDVPGKRWLEERLRETAKTVLLVSHDRELLARAADRIVTLEAGGAGSTAWVHGGGFETYHRARDERMARLDELRRRWDEEHAKLKRFVADMKAKAAASDEFASRYRAAQTRLRRFEEAGPPEERPPEQNLELRLRGSRTGKRAVVADGLELTGLMRPFDLEVWFGDRVAVLGSNGSGKSHFLRLLAAGGTEPDALLGHVTAVGSALEPVAHAGTVTLGARVVPGWFAQTHRHPEFTGRTLLEILHRGDDRRVGIPRDAASSALDRYGLVRQAEQTFDSLSGGQQARFQVLLLELSGATLLLLDEPTDNLDLMSAEALERALAAFEGTVLAVTHDRWFARSFDRFVVFGGDGRVYESSEAVWDEQRVARAR

Samples

Sample ID Description Type Environment
1 2508501039 Frankia saprophytica CN3 Isolate Nodule
2 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
3 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
4 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
5 2643221548 Streptomyces sp. Root55 Isolate Unclassified
6 2643221549 Agromyces sp. Root1464 Isolate Unclassified
7 2643221553 Microbacterium sp. Root553 Isolate Unclassified
8 2643221566 Microbacterium sp. Root166 Isolate Unclassified
9 2643221572 Leifsonia sp. Root60 Isolate Unclassified
10 2643221578 Streptomyces sp. Root63 Isolate Unclassified
11 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
12 2643221619 Agromyces sp. Root81 Isolate Unclassified
13 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
14 2643221641 Nocardioides sp. Root122 Isolate Unclassified
15 2643221649 Leifsonia sp. Root4 Isolate Unclassified
16 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
17 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
18 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
19 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
20 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
21 2739367898 Nocardioides sp. CF479 Isolate Unclassified
22 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
23 2773857759 Microbacterium sp. 1294 Isolate Unclassified
24 2808606372 Agromyces sp. 23-23 Isolate Unclassified
25 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
26 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
27 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
28 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
29 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
30 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
31 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
32 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
33 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
34 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
35 2873314349 Sphaerisporangium siamense DSM 45784 Isolate Rhizosphere
36 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
37 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
38 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
39 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
40 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
41 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
42 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
43 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
44 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
45 2908811453 Rhodococcus sp. 1R11 Isolate Unclassified
46 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
47 2919069694 Microbacterium sp. 1154 Isolate Unclassified
48 2919395869 Microbacterium resistens 2980 Isolate Unclassified
49 2919420072 Rhodococcus fascians 3241 Isolate Rhizosphere
50 2919432681 Rhodococcus sp. 3258 Isolate Rhizosphere
51 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
52 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
53 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
54 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
55 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
56 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
57 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
58 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
59 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
60 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
61 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
62 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
63 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
64 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
65 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
66 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
67 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
68 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
69 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
70 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
71 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
72 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
73 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
74 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
75 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
76 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
77 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
78 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
79 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
80 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
81 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
82 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
83 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
84 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
85 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
86 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
87 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
99 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
100 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
101 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
102 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
103 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
104 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
105 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
106 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
107 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
110 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
111 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
112 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
113 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
114 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
115 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
116 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
117 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
118 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
119 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
120 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
121 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
122 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
123 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
124 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
125 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
126 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
127 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
128 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
129 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
130 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
131 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
132 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
133 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
134 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
135 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
136 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
137 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
138 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
139 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
140 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
141 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
142 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
143 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
144 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
145 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
146 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
147 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
148 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
149 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
150 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
151 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
152 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
153 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
154 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
155 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
156 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
157 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
158 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
159 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
160 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
161 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
162 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
163 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
164 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
165 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
166 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
167 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
168 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
170 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
171 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
172 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
173 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
174 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
175 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
176 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
177 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
178 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 65.43
Metatranscriptomes 0
Isolates 34.57

Biome Distribution

Category Percentage (%)
Aerial Root 1.06
Bulb 0
Endosphere 3.19
Nodule 0.53
Rhizoplane 4.79
Rhizosphere 64.36
Stem 0
Stem Tuber 0
Unclassified 26.06

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100129460 3300005329 Bacteria 2388
2 Ga0068869_100037767 3300005334 Bacteria 3435
3 Ga0070675_100006947 3300005354 Bacteria 8694
4 Ga0070700_100014575 3300005441 Bacteria 4440
5 Ga0070662_100006051 3300005457 Bacteria 7768
6 Ga0070681_10029150 3300005458 Bacteria 5541
7 Ga0070698_100028398 3300005471 Bacteria 5810
8 Ga0070664_100001843 3300005564 Bacteria 16991
9 Ga0068857_100038672 3300005577 Bacteria 4225
10 Ga0068852_100030177 3300005616 Bacteria 4461
11 Ga0068861_100039492 3300005719 Bacteria 3523
12 Ga0068862_100009191 3300005844 Bacteria 8184
13 Ga0081455_10123605 3300005937 Bacteria 2035
14 Ga0081539_10000109 3300005985 Bacteria 193696
15 Ga0070717_10122043 3300006028 Bacteria 2233
16 Ga0075368_10002078 3300006042 Bacteria 6474
17 Ga0075363_100031939 3300006048 Bacteria 2732
18 Ga0075364_10076411 3300006051 Bacteria 2210
19 Ga0075429_100026400 3300006880 Bacteria 5042
20 Ga0111539_10018897 3300009094 Bacteria 8525
21 Ga0114129_10005056 3300009147 Bacteria 18560
22 Ga0105248_10005293 3300009177 Bacteria 14202
23 Ga0163162_10051721 3300013306 Bacteria 4123
24 Ga0157372_10089667 3300013307 Bacteria 3494
25 Ga0157377_10003941 3300014745 Bacteria 6765
26 Ga0207426_1016110 3300025302 Bacteria 2694
27 Ga0207655_1006296 3300025728 Bacteria 7893
28 Ga0207649_10018565 3300025920 Bacteria 3958
29 Ga0207690_10028613 3300025932 Bacteria 3533
30 Ga0207706_10014221 3300025933 Bacteria 7214
31 Ga0207689_10009163 3300025942 Bacteria 8562
32 Ga0207661_10020823 3300025944 Bacteria 4908
33 Ga0207679_10003555 3300025945 Bacteria 9656
34 Ga0207639_10046775 3300026041 Bacteria 3266
35 Ga0207708_10050655 3300026075 Bacteria 3161
36 Ga0207674_10003200 3300026116 Bacteria 20160
37 Ga0207675_100009167 3300026118 Bacteria 9283
38 Ga0207675_100059719 3300026118 Bacteria 3559
39 Ga0316576_10046157 3300031727 Bacteria 3152
40 Ga0307412_10009136 3300031911 Bacteria 5680
41 Ga0307409_100041357 3300031995 Bacteria 3442
42 Ga0307409_100101997 3300031995 Bacteria 2383
43 Ga0307415_100004360 3300032126 Bacteria 7331
44 Ga0316574_0061862 3300035398 Bacteria 2352
45 Ga0373935_0050352 3300035692 Bacteria 2643
46 Ga0373947_0040266 3300035725 Bacteria 2782
47 Ga0395898_0071555 3300037466 Bacteria 3351
48 Ga0395905_0175124 3300037471 Bacteria 2014
49 Ga0436364_0998009 3300037853 Bacteria 7508
50 Ga0395901_0037700 3300038443 Bacteria 4999
51 Ga0439436_0004483 3300041404 Bacteria 4282
52 Ga0439457_003636 3300042014 Bacteria 4173
53 Ga0466966_0015403 3300044684 Bacteria 5055
54 Ga0466959_0101445 3300045049 Bacteria 2060
55 Ga0466967_0123110 3300045976 Bacteria 2399
56 Ga0495603_0010793 3300046455 Bacteria 5541
57 Ga0495651_0002063 3300046462 Bacteria 15529
58 Ga0495653_0013086 3300046463 Bacteria 6764
59 Ga0495580_0005827 3300046472 Bacteria 10107
60 Ga0495662_0000390 3300046476 Bacteria 19590
61 Ga0495664_0003456 3300046477 Bacteria 8593
62 Ga0495608_0006616 3300046511 Bacteria 8228
63 Ga0495630_0038944 3300046517 Bacteria 3555
64 Ga0495652_0030673 3300046529 Bacteria 4712
65 Ga0495665_0011264 3300046531 Bacteria 4842
66 Ga0495640_0010828 3300046533 Bacteria 7035
67 Ga0495586_0016566 3300046535 Bacteria 3921
68 Ga0495587_0005716 3300046536 Bacteria 8104
69 Ga0495645_0003715 3300046543 Bacteria 10377
70 Ga0495645_0037468 3300046543 Bacteria 3535
71 Ga0495645_0061274 3300046543 Bacteria 2726
72 Ga0495667_0008797 3300046559 Bacteria 6864
73 Ga0495634_0061971 3300046642 Bacteria 2484
74 Ga0495635_0012485 3300046663 Bacteria 5950
75 Ga0495657_0033029 3300046675 Bacteria 3606
76 Ga0495599_0005565 3300046678 Bacteria 7556
77 Ga0495623_0007953 3300046679 Bacteria 6891
78 Ga0495646_0008190 3300046680 Bacteria 6642
79 Ga0495669_0001009 3300046684 Bacteria 11749
80 Ga0495613_0003696 3300046689 Bacteria 11475
81 Ga0495613_0018672 3300046689 Bacteria 5170
82 Ga0495600_0002560 3300046809 Bacteria 10482
83 Ga0495581_0026390 3300047315 Bacteria 3367
84 Ga0495604_0000113 3300047317 Bacteria 68389
85 Ga0495674_0014322 3300047319 Bacteria 7426
86 Ga0495676_0055903 3300047321 Bacteria 3125
87 Ga0495675_0002112 3300047444 Bacteria 11852
88 Ga0495684_0011762 3300047471 Bacteria 6755
89 Ga0495593_0003677 3300047673 Bacteria 9157
90 Ga0495602_0015786 3300048088 Bacteria 7606
91 Ga0495614_0004359 3300048089 Bacteria 6373
92 Ga0496100_0019940 3300048903 Bacteria 4011
93 Ga0496101_0007892 3300048904 Bacteria 6927
94 Ga0496103_0053784 3300048906 Bacteria 2495
95 Ga0496105_0044851 3300048908 Bacteria 3647
96 Ga0496107_0069878 3300048910 Bacteria 2549
97 Ga0496109_0080219 3300048912 Bacteria 3006
98 Ga0496111_0014767 3300048914 Bacteria 5345
99 Ga0496112_0062667 3300048915 Bacteria 3668
100 Ga0496115_0022373 3300048918 Bacteria 4897
101 Ga0496119_0000251 3300048922 Bacteria 75958
102 Ga0496119_0002632 3300048922 Bacteria 19477
103 Ga0496120_0011571 3300048923 Bacteria 6060
104 Ga0496122_0001054 3300048925 Bacteria 48096
105 Ga0496123_0001017 3300048926 Bacteria 42804
106 Ga0496124_0001625 3300048927 Bacteria 32229
107 Ga0496124_0096115 3300048927 Bacteria 2407
108 Ga0496125_0000209 3300048928 Bacteria 122267
109 Ga0501043_0171218 3300049579 Bacteria 1694
110 Ga0501068_0009047 3300049584 Bacteria 5559
111 Ga0501070_0031376 3300049586 Bacteria 4452
112 Ga0501071_0058773 3300049587 Bacteria 2781
113 Ga0501071_0179769 3300049587 Bacteria 1585
114 Ga0501072_0006470 3300049588 Bacteria 8920
115 Ga0501076_0017550 3300049592 Bacteria 5441
116 Ga0501035_0166307 3300049822 Bacteria 1907
117 Ga0501045_0011507 3300049824 Bacteria 6214
118 nmdc:mga00v17_73945_c1 3300050491 Bacteria 2117
119 nmdc:mga05p37_173448_c1 3300050507 Bacteria 2629
120 nmdc:mga08y16_12704_c1 3300050511 Bacteria 8860
121 Ga0495601_0001806 3300053077 Bacteria 11880
122 Ga0495601_0005598 3300053077 Bacteria 7326
123 Ga0500643_001121 3300053087 Bacteria 16019

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046476 Ga0495662_0000390 Ga0495662_0000390_12_1553 452
2 3300046517 Ga0495630_0038944 Ga0495630_0038944_2003_3544 452
3 3300046642 Ga0495634_0061971 Ga0495634_0061971_12_1553 452
4 3300049587 Ga0501071_0179769 Ga0501071_0179769_44_1519 452
5 3300049579 Ga0501043_0171218 Ga0501043_0171218_171_1676 462
6 3300048908 Ga0496105_0044851 Ga0496105_0044851_2091_3635 473
7 3300041404 Ga0439436_0004483 Ga0439436_0004483_2459_4087 483
8 3300042014 Ga0439457_003636 Ga0439457_003636_2294_3922 483
9 iso_pu_bacteria 2675903060 2676490274 483
10 3300031995 Ga0307409_100101997 Ga0307409_1001019972 484
11 3300026118 Ga0207675_100009167 Ga0207675_1000091672 488
12 3300005937 Ga0081455_10123605 Ga0081455_101236052 491
13 3300049822 Ga0501035_0166307 Ga0501035_0166307_144_1763 491
14 iso_pu_bacteria 2585427649 2586060445 493
15 iso_pu_bacteria 2856741275 2856743898 494
16 iso_pu_bacteria 2873314349 2873316123 494
17 iso_pu_bacteria 2884693830 2884704101 494
18 iso_pu_bacteria 2891395885 2891401073 494
19 iso_pu_bacteria 2891554331 2891560072 494
20 iso_pu_bacteria 2895427314 2895431876 494
21 iso_pu_bacteria 2895442618 2895448544 494
22 iso_pu_bacteria 8055066027 8055069734 494
23 iso_pu_bacteria 8055172936 8055180644 494
24 3300037466 Ga0395898_0071555 Ga0395898_0071555_832_2523 495
25 3300037471 Ga0395905_0175124 Ga0395905_0175124_152_1843 495
26 3300038443 Ga0395901_0037700 Ga0395901_0037700_790_2481 495
27 iso_pu_bacteria 2508501039 2508674955 496
28 iso_pu_bacteria 2917736166 2917743176 496
29 iso_pu_bacteria 8054160619 8054165563 496
30 iso_pu_bacteria 2643221601 2644014424 497
31 iso_pu_bacteria 2643221631 2644175861 497
32 iso_pu_bacteria 2818991472 2819742287 497
33 3300005471 Ga0070698_100028398 Ga0070698_1000283983 498
34 3300006028 Ga0070717_10122043 Ga0070717_101220431 498
35 3300035692 Ga0373935_0050352 Ga0373935_0050352_349_1956 498
36 3300035725 Ga0373947_0040266 Ga0373947_0040266_238_1845 498
37 iso_pu_bacteria 2643221548 2643764730 499
38 iso_pu_bacteria 2643221682 2644462115 499
39 iso_pu_bacteria 2966598605 2966601415 499
40 3300009177 Ga0105248_10005293 Ga0105248_1000529313 500
41 3300013307 Ga0157372_10089667 Ga0157372_100896671 500
42 3300044684 Ga0466966_0015403 Ga0466966_0015403_2878_4605 500
43 3300045049 Ga0466959_0101445 Ga0466959_0101445_252_1979 500
44 3300046455 Ga0495603_0010793 Ga0495603_0010793_1023_2651 500
45 3300046462 Ga0495651_0002063 Ga0495651_0002063_5280_6965 500
46 3300046463 Ga0495653_0013086 Ga0495653_0013086_3927_5612 500
47 3300046472 Ga0495580_0005827 Ga0495580_0005827_7076_8761 500
48 3300046477 Ga0495664_0003456 Ga0495664_0003456_3790_5475 500
49 3300046511 Ga0495608_0006616 Ga0495608_0006616_1265_2950 500
50 3300046529 Ga0495652_0030673 Ga0495652_0030673_1153_2838 500
51 3300046531 Ga0495665_0011264 Ga0495665_0011264_2530_4215 500
52 3300046533 Ga0495640_0010828 Ga0495640_0010828_2111_3796 500
53 3300046535 Ga0495586_0016566 Ga0495586_0016566_557_2242 500
54 3300046536 Ga0495587_0005716 Ga0495587_0005716_1967_3652 500
55 3300046543 Ga0495645_0003715 Ga0495645_0003715_6701_8386 500
56 3300046543 Ga0495645_0061274 Ga0495645_0061274_808_2469 500
57 3300046559 Ga0495667_0008797 Ga0495667_0008797_500_2185 500
58 3300046663 Ga0495635_0012485 Ga0495635_0012485_1025_2710 500
59 3300046675 Ga0495657_0033029 Ga0495657_0033029_1060_2745 500
60 3300046678 Ga0495599_0005565 Ga0495599_0005565_4851_6536 500
61 3300046679 Ga0495623_0007953 Ga0495623_0007953_4217_5902 500
62 3300046680 Ga0495646_0008190 Ga0495646_0008190_2991_4676 500
63 3300046689 Ga0495613_0003696 Ga0495613_0003696_8741_10369 500
64 3300046689 Ga0495613_0018672 Ga0495613_0018672_229_1914 500
65 3300046809 Ga0495600_0002560 Ga0495600_0002560_6580_8265 500
66 3300047315 Ga0495581_0026390 Ga0495581_0026390_1157_2842 500
67 3300047317 Ga0495604_0000113 Ga0495604_0000113_10317_12002 500
68 3300047319 Ga0495674_0014322 Ga0495674_0014322_2485_4170 500
69 3300047321 Ga0495676_0055903 Ga0495676_0055903_187_1815 500
70 3300047444 Ga0495675_0002112 Ga0495675_0002112_9306_10991 500
71 3300047471 Ga0495684_0011762 Ga0495684_0011762_1634_3319 500
72 3300047673 Ga0495593_0003677 Ga0495593_0003677_2816_4501 500
73 3300048088 Ga0495602_0015786 Ga0495602_0015786_3257_4942 500
74 3300048089 Ga0495614_0004359 Ga0495614_0004359_1041_2669 500
75 3300053077 Ga0495601_0001806 Ga0495601_0001806_360_2033 500
76 3300053077 Ga0495601_0005598 Ga0495601_0005598_1305_2990 500
77 iso_pu_bacteria 2818991463 2819695196 500
78 3300046684 Ga0495669_0001009 Ga0495669_0001009_9478_11097 502
79 3300053087 Ga0500643_001121 Ga0500643_001121_4396_6015 502
80 3300025302 Ga0207426_1016110 Ga0207426_10161101 503
81 3300005616 Ga0068852_100030177 Ga0068852_1000301773 504
82 3300026041 Ga0207639_10046775 Ga0207639_100467752 504
83 3300048922 Ga0496119_0000251 Ga0496119_0000251_53279_54892 504
84 3300048923 Ga0496120_0011571 Ga0496120_0011571_3116_4729 504
85 3300005985 Ga0081539_10000109 Ga0081539_1000010987 505
86 iso_pu_bacteria 2739367898 2740168012 508
87 3300037853 Ga0436364_0998009 Ga0436364_0998009_2227_3921 510
88 3300006880 Ga0075429_100026400 Ga0075429_1000264002 511
89 3300009147 Ga0114129_10005056 Ga0114129_1000505616 511
90 3300050507 nmdc:mga05p37_173448_c1 nmdc:mga05p37_173448_c1_789_2480 511
91 iso_pu_bacteria 2873314349 2873320610 511
92 iso_pu_bacteria 2643221553 2643783529 512
93 3300031911 Ga0307412_10009136 Ga0307412_100091362 513
94 iso_pu_bacteria 2643221578 2643899575 515
95 iso_pu_bacteria 2643221673 2644410113 515
96 iso_pu_bacteria 2837268691 2837269047 515
97 iso_pu_bacteria 2868088558 2868090493 515
98 iso_pu_bacteria 2643221572 2643876391 516
99 iso_pu_bacteria 2643221641 2644229190 516
100 iso_pu_bacteria 2643221669 2644383446 516
101 iso_pu_bacteria 2895660088 2895660565 516
102 iso_pu_bacteria 2551306166 2552112321 517
103 iso_pu_bacteria 2585428094 2587863714 517
104 iso_pu_bacteria 2643221549 2643768565 517
105 iso_pu_bacteria 2643221566 2643847847 517
106 iso_pu_bacteria 2643221619 2644111943 517
107 iso_pu_bacteria 2643221649 2644277738 517
108 iso_pu_bacteria 2738543034 2739362150 517
109 iso_pu_bacteria 2773857758 2774378828 517
110 iso_pu_bacteria 2773857759 2774383430 517
111 iso_pu_bacteria 2808606372 2808901086 517
112 iso_pu_bacteria 2816332119 2816421128 517
113 iso_pu_bacteria 2857720070 2857722180 517
114 iso_pu_bacteria 2857723135 2857724665 517
115 iso_pu_bacteria 2862993130 2862993569 517
116 iso_pu_bacteria 2904765812 2904770059 517
117 iso_pu_bacteria 2904770941 2904771092 517
118 iso_pu_bacteria 2908678064 2908678497 517
119 iso_pu_bacteria 2908811453 2908815136 517
120 iso_pu_bacteria 2919069694 2919070818 517
121 iso_pu_bacteria 2919395869 2919397767 517
122 iso_pu_bacteria 2919420072 2919424381 517
123 iso_pu_bacteria 2919432681 2919436774 517
124 iso_pu_bacteria 2919443155 2919445605 517
125 iso_pu_bacteria 2928090899 2928090943 517
126 iso_pu_bacteria 2935409751 2935412171 517
127 iso_pu_bacteria 2964326757 2964328523 517
128 iso_pu_bacteria 2974315732 2974319707 517
129 iso_pu_bacteria 2977251589 2977252074 517
130 iso_pu_bacteria 2984523437 2984523575 517
131 iso_pu_bacteria 2821268502 2821269123 518
132 iso_pu_bacteria 2990044586 2990046372 519
133 3300031727 Ga0316576_10046157 Ga0316576_100461572 520
134 3300035398 Ga0316574_0061862 Ga0316574_0061862_10_1698 520
135 3300045976 Ga0466967_0123110 Ga0466967_0123110_233_1876 520
136 3300005458 Ga0070681_10029150 Ga0070681_100291505 521
137 3300006042 Ga0075368_10002078 Ga0075368_100020783 521
138 3300006048 Ga0075363_100031939 Ga0075363_1000319392 521
139 3300006051 Ga0075364_10076411 Ga0075364_100764112 521
140 3300013306 Ga0163162_10051721 Ga0163162_100517213 521
141 3300025728 Ga0207655_1006296 Ga0207655_10062965 521
142 3300032126 Ga0307415_100004360 Ga0307415_1000043601 521
143 3300046543 Ga0495645_0037468 Ga0495645_0037468_184_1872 521
144 3300048903 Ga0496100_0019940 Ga0496100_0019940_782_2470 521
145 3300048904 Ga0496101_0007892 Ga0496101_0007892_1200_2888 521
146 3300048906 Ga0496103_0053784 Ga0496103_0053784_269_1957 521
147 3300048910 Ga0496107_0069878 Ga0496107_0069878_782_2470 521
148 3300048912 Ga0496109_0080219 Ga0496109_0080219_69_1757 521
149 3300048914 Ga0496111_0014767 Ga0496111_0014767_462_2150 521
150 3300048915 Ga0496112_0062667 Ga0496112_0062667_1449_3137 521
151 3300048918 Ga0496115_0022373 Ga0496115_0022373_1056_2744 521
152 3300048922 Ga0496119_0002632 Ga0496119_0002632_2702_4390 521
153 3300048925 Ga0496122_0001054 Ga0496122_0001054_45271_46968 521
154 3300048926 Ga0496123_0001017 Ga0496123_0001017_19939_21636 521
155 3300048927 Ga0496124_0001625 Ga0496124_0001625_15513_17210 521
156 3300048927 Ga0496124_0096115 Ga0496124_0096115_410_2098 521
157 3300048928 Ga0496125_0000209 Ga0496125_0000209_91346_93034 521
158 3300049584 Ga0501068_0009047 Ga0501068_0009047_1229_2956 521
159 3300049586 Ga0501070_0031376 Ga0501070_0031376_25_1713 521
160 3300049587 Ga0501071_0058773 Ga0501071_0058773_254_1936 521
161 3300049588 Ga0501072_0006470 Ga0501072_0006470_4538_6220 521
162 3300049592 Ga0501076_0017550 Ga0501076_0017550_3341_5023 521
163 3300049824 Ga0501045_0011507 Ga0501045_0011507_4124_5806 521
164 3300050491 nmdc:mga00v17_73945_c1 nmdc:mga00v17_73945_c1_26_1714 521
165 iso_pu_bacteria 2984580707 2984582302 521
166 iso_pu_bacteria 8045830549 8045832304 521
167 3300005719 Ga0068861_100039492 Ga0068861_1000394923 523
168 3300025920 Ga0207649_10018565 Ga0207649_100185653 523
169 3300026118 Ga0207675_100059719 Ga0207675_1000597192 523
170 3300031995 Ga0307409_100041357 Ga0307409_1000413572 524
171 3300005329 Ga0070683_100129460 Ga0070683_1001294602 535
172 3300005334 Ga0068869_100037767 Ga0068869_1000377672 535
173 3300005354 Ga0070675_100006947 Ga0070675_1000069473 535
174 3300005441 Ga0070700_100014575 Ga0070700_1000145751 535
175 3300005457 Ga0070662_100006051 Ga0070662_1000060513 535
176 3300005564 Ga0070664_100001843 Ga0070664_1000018439 535
177 3300005577 Ga0068857_100038672 Ga0068857_1000386723 535
178 3300005844 Ga0068862_100009191 Ga0068862_1000091914 535
179 3300009094 Ga0111539_10018897 Ga0111539_100188973 535
180 3300014745 Ga0157377_10003941 Ga0157377_100039416 535
181 3300025932 Ga0207690_10028613 Ga0207690_100286133 535
182 3300025933 Ga0207706_10014221 Ga0207706_100142212 535
183 3300025942 Ga0207689_10009163 Ga0207689_100091633 535
184 3300025944 Ga0207661_10020823 Ga0207661_100208233 535
185 3300025945 Ga0207679_10003555 Ga0207679_100035553 535
186 3300026075 Ga0207708_10050655 Ga0207708_100506551 535
187 3300026116 Ga0207674_10003200 Ga0207674_1000320011 535
188 3300050511 nmdc:mga08y16_12704_c1 nmdc:mga08y16_12704_c1_2382_4094 535

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12848

ABC_tran_Xtn

ABC transporter

262

351

0.84

PF00005

ABC_tran

ABC transporter

45

216

0.8

PF00005

ABC_tran

ABC transporter

372

524

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ha8-assembly1.cif.gz_V cryo-em structure of the abcf protein vmlr bound to the bacillus subtilis ribosome 0.7995 1 531
8hps-assembly1.cif.gz_D lpqy-sugabc in state 5 0.7899 3 227
7lkz-assembly1.cif.gz_A structure of atp-bound human abca4 0.7894 4 225
7dd0-assembly1.cif.gz_A crystal structure of the n-terminal domain of tagh from bacillus subtilis 0.7877 4 240
3pux-assembly1.cif.gz_B crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-bef3 0.7841 3 233
ID Description Score Start End Superfamily
af_A0A1D8PJ75_3_299_1.20.1270.60 Mainly Alpha;Up-down Bundle;Substrate Binding Domain Of Dnak; Chain:A; Domain 2;Arfaptin homology (AH) domain/BAR domain 0.9175 232 292 1.20.1270.60
af_K7L5V3_28_179_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8921 2 63 3.40.50.300
af_A0A0R0IY12_408_566_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8839 2 63 3.40.50.300
af_A0A1D6P1I8_181_285_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8792 3 62 3.40.50.300
af_A0A0P0VBQ7_902_1031_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8664 2 63 3.40.50.300
ID Description Score Start End GO Terms
AF-Q6A9G7-F1-model_v4 ABC transporter ATP-binding protein 0.953 159 315 GO:0005524
AF-A0A846RQL2-F1-model_v4 ATPase subunit of ABC transporter with duplicated ATPase domains 0.9307 107 468 GO:0005524
GO:0016887
AF-A0A7W3QR46-F1-model_v4 ATPase subunit of ABC transporter with duplicated ATPase domains 0.917 286 535 GO:0005524
GO:0016887
AF-A0A7K0KWY9-F1-model_v4 ATP-binding cassette domain-containing protein 0.9102 220 535 GO:0005524
GO:0016887
AF-A0A7K0KWY9-F1-model_v4 ATP-binding cassette domain-containing protein 0.8932 220 535 GO:0005524
GO:0016887

Feature Viewer

pLDDT pTM Quality
88.99 0.87 High
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Predicted Structure (AlphaFold2)

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