F290101

General Info

Members Datasets Scaffolds Average Seq Length
188 174 71 820

Family's Representative Sequence

Representative Sequence 3300053125|Ga0500618_000007|Ga0500618_000007_21571_24288
Length 905
Sequence MRKDRIPMNSPVSNHTARFEPLTIPVEGMHCASCVRRVETGAAKLAGVTSSAVNFATKKLTVETAEGFDPELLEKTIRKLGYEVPEGAMDHALREAGMVSADFDVGDGPSSAYRHLLAAGGAKDASRDLSTRSEIEQGTSPLPVRAERARVRGSTEDAVHNEHHAHSTTIAQNHASHTHHGEQPALKRDLAIAFILTLPLFVLEMTGHIYAPFHHVLMGVIDTQNLYYLYFILSTAVIFWPGWRFLKIGLPALVRGYPEMNSLVAVGVLAAYGYSLVTTFAPGLLPETARYVYYEAATVIVTLILFGRLMEARATGRTGAAIEKLAGLQAKTARIDRDGREIDVPTSEVVPGDIVIIRPGERIPVDGTVIDGASHVDESMMSGEPLPVQKSAGSTVIGGTVNTTGTLRFTAQKVGRDTMLSGIIRMVEQAQGAKLPIQTLVDRVTAWFVPAVIGLAVVTFAVWYLIGPDPKITHALISAVAVLIIACPCAMGLAVPVSIVVGGGRAAELGVLFRKGDALQGLSDVTTVVVDKTGTITKGRPELTDFIPAGGFDEAEALALIAAVEARSEHPIANAIVKAAEARGLVVSGATDFRSVTGYGIRAIVEGRDIAIGADRYMQQLGASVDIFADAASRLGDEGKTPFYAAIDGKLAAIIAVADPLKPSSVTAIHTLKSMGIDVVMVTGDNRRTAHAIARQVGIDHVVAEVLPAGKVEAIHALRLGEAARPLPNPSPQGGGTSSAAPSGTRSATVFTKERGAGHLSSPPLWGRCRQAEGDFGRHGPRKLAFVGDGINDAPALAEADVGIAIGTGTDVAIESADVVLVGGELSGVVAAIAVSRATMRNIRQNLFWAFGYNVALIPLAAGVLYPAFGLTLSPMIGAAAMAMSSTFVLANALRLKTFKSEETS

Samples

Sample ID Description Type Environment
1 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
2 2509276019 Ensifer aridi TW10 Isolate Nodule
3 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
4 2512875026 Sinorhizobium medicae WSM1115 Isolate Nodule
5 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
6 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
7 2513237156 Sinorhizobium medicae WSM1369 Isolate Nodule
8 2534681786 Brucella suis 92/29 Isolate Unclassified
9 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
10 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
11 2558860100 Sinorhizobium sp. PC2 Isolate Nodule
12 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
13 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
14 2582581294 Rhizobium sp. CF394 Isolate Rhizosphere
15 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
16 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
17 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
18 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
19 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
20 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
21 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
22 2643221582 Rhizobium sp. Root651 Isolate Unclassified
23 2643221664 Massilia sp. Root418 Isolate Unclassified
24 2643221693 Rhizobium sp. Root491 Isolate Unclassified
25 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
26 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
27 2751185800 Brucella pituitosa AA2 Isolate Unclassified
28 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
29 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
30 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
31 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
32 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
33 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
34 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
35 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
36 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
37 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
38 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
39 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
40 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
41 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
42 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
43 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
44 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
45 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
46 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
47 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
48 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
49 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
50 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
51 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
52 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
53 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
54 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
55 2850079185 Ensifer aridi JNVU TP6 Isolate Unclassified
56 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
57 2854911287 Brucella lupini LUP21 Isolate Unclassified
58 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
59 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
60 2871444079 Mesorhizobium sp. M1A.F.Ca.IN.020.06.1.1 Isolate Nodule
61 2874102143 Mesorhizobium sp. M1A.F.Ca.IN.022.04.1.1 Isolate Nodule
62 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
63 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
64 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
65 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
66 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
67 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
68 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
69 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
70 2921244191 Sinorhizobium meliloti 2119 Isolate Nodule
71 2921282425 Sinorhizobium meliloti USDA1203 Isolate Nodule
72 2922158528 Mesorhizobium sp. M1A.F.Ca.IN.022.05.2.1 Isolate Nodule
73 2924144063 Sinorhizobium meliloti USDA1022 Isolate Nodule
74 2924150972 Sinorhizobium meliloti USDA1700 Isolate Nodule
75 2924158325 Sinorhizobium meliloti USDA1146 Isolate Nodule
76 2924200457 Sinorhizobium meliloti USDA1007 Isolate Nodule
77 2924726620 Mesorhizobium sp. M1A.F.Ca.IN.020.03.2.1 Isolate Nodule
78 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
79 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
80 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
81 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
82 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
83 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
84 2937098957 Sinorhizobium meliloti USDA1519 Isolate Nodule
85 2937891427 Mesorhizobium sp. M1A.F.Ca.IN.022.07.1.1 Isolate Nodule
86 2957464669 Sinorhizobium meliloti USDA1520 Isolate Nodule
87 2958122699 Mesorhizobium sp. M7A.F.Ca.US.001.04.2.1 Isolate Nodule
88 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
89 2964621998 Sinorhizobium meliloti USDA1235 Isolate Nodule
90 2964685014 Sinorhizobium meliloti USDA1232 Isolate Nodule
91 2967678726 Sinorhizobium meliloti USDA1467 Isolate Nodule
92 2967742019 Sinorhizobium meliloti USDA1676 Isolate Nodule
93 2967769361 Sinorhizobium meliloti USDA1005 Isolate Nodule
94 2968097103 Mesorhizobium sp. M1A.F.Ca.IN.020.30.1.1 Isolate Nodule
95 2970019648 Sinorhizobium meliloti USDA1603 Isolate Nodule
96 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
97 2970061556 Sinorhizobium meliloti USDA1810 Isolate Nodule
98 2970088815 Sinorhizobium meliloti USDA1819 Isolate Nodule
99 2970489779 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Isolate Nodule
100 2977551784 Sinorhizobium meliloti USDA1035 Isolate Nodule
101 2977558990 Sinorhizobium meliloti USDA1222 Isolate Nodule
102 2977872689 Mesorhizobium sp. M7A.F.Ca.US.001.04.1.1 Isolate Nodule
103 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
104 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
105 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
106 2979779861 Mesorhizobium sp. M1A.F.Ca.IN.022.02.1.1 Isolate Nodule
107 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
108 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
109 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
110 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
111 2996341866 Mesorhizobium sp. M1A.F.Ca.IN.020.32.1.1 Isolate Nodule
112 3004167301 Mesorhizobium loti 582 Isolate Unclassified
113 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
114 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
115 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
116 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
117 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
118 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
119 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
120 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
121 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
122 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
123 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
124 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
125 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
126 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
127 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
128 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
129 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
130 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
131 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
132 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
133 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
134 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
135 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
136 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
137 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
138 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
139 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
140 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
141 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
142 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
143 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
144 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
145 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
146 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
147 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
148 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
151 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
153 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
158 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
159 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
160 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
161 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
162 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
164 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
165 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
166 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
167 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
168 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
169 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
170 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
171 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
172 8005258706 Rhizobium sp. R693 Isolate Nodule
173 8054357960 Idiomarina rhizosphaerae M1R2S28 Isolate Rhizosphere
174 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 37.77
Metatranscriptomes 0
Isolates 62.23

Biome Distribution

Category Percentage (%)
Aerial Root 2.13
Bulb 0
Endosphere 6.38
Nodule 37.23
Rhizoplane 3.72
Rhizosphere 28.19
Stem 0
Stem Tuber 0
Unclassified 22.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055526_1000091 3300003771 Bacteria 82891
2 Ga0055524_1000856 3300003775 Bacteria 19905
3 Ga0058692_1001530 3300003856 Bacteria 8419
4 Ga0065165_1003540 3300005262 Bacteria 10809
5 Ga0065707_10083148 3300005295 Bacteria 10204
6 Ga0075365_10012834 3300006038 Bacteria 4991
7 Ga0075368_10003490 3300006042 Bacteria 5259
8 Ga0079104_1000010 3300006946 Bacteria 366021
9 Ga0099826_10000246 3300006948 Bacteria 23828
10 Ga0099826_10010488 3300006948 Bacteria 6944
11 Ga0105244_10000403 3300009036 Bacteria 40205
12 Ga0157371_10000073 3300013102 Bacteria 163215
13 Ga0157370_10000367 3300013104 Bacteria 56787
14 Ga0157369_10035368 3300013105 Bacteria 5478
15 Ga0214543_1000008 3300021327 Bacteria 385680
16 Ga0209564_1000017 3300025295 Bacteria 594063
17 Ga0209564_1000856 3300025295 Bacteria 40580
18 Ga0207655_1000331 3300025728 Bacteria 69149
19 Ga0209281_1000078 3300027111 Bacteria 261622
20 Ga0209371_1000021 3300027312 Bacteria 555864
21 Ga0209371_1000941 3300027312 Bacteria 22694
22 Ga0209282_1000135 3300027666 Bacteria 44288
23 Ga0209282_1024261 3300027666 Bacteria 3805
24 Ga0268256_1000020 3300030500 Bacteria 557873
25 Ga0495654_0000759 3300046530 Bacteria 24938
26 Ga0495681_0007805 3300047470 Bacteria 6777
27 Ga0495686_0000550 3300047472 Bacteria 53672
28 Ga0496111_0005407 3300048914 Bacteria 8180
29 Ga0496116_0027909 3300048919 Bacteria 4100
30 Ga0496117_0000002 3300048920 Bacteria 2483758
31 Ga0496118_0000245 3300048921 Bacteria 96235
32 Ga0496119_0010939 3300048922 Bacteria 7578
33 Ga0496119_0040717 3300048922 Bacteria 2968
34 Ga0496120_0000354 3300048923 Bacteria 75590
35 Ga0496121_0001423 3300048924 Bacteria 40492
36 Ga0496122_0000001 3300048925 Bacteria 1827766
37 Ga0496123_0000001 3300048926 Bacteria 1831497
38 Ga0496123_0004810 3300048926 Bacteria 13933
39 Ga0496124_0014751 3300048927 Bacteria 7540
40 Ga0496125_0002316 3300048928 Bacteria 25106
41 Ga0496126_0086739 3300048929 Bacteria 2759
42 Ga0501031_0000745 3300049568 Bacteria 19556
43 Ga0501032_0000298 3300049569 Bacteria 41726
44 Ga0501033_0011266 3300049570 Bacteria 6845
45 Ga0501034_0001226 3300049571 Bacteria 35065
46 Ga0501034_0001379 3300049571 Bacteria 32672
47 Ga0501034_0006661 3300049571 Bacteria 12387
48 Ga0501036_0000083 3300049572 Bacteria 58665
49 Ga0501036_0000909 3300049572 Bacteria 22186
50 Ga0501037_0051728 3300049573 Bacteria 3004
51 Ga0501038_0002871 3300049574 Bacteria 16057
52 Ga0501038_0049446 3300049574 Bacteria 3635
53 Ga0501040_0008824 3300049576 Bacteria 6552
54 Ga0501043_0052318 3300049579 Bacteria 3208
55 Ga0501047_0001360 3300049581 Bacteria 24002
56 Ga0501070_0006626 3300049586 Bacteria 9856
57 Ga0501077_0000103 3300049593 Bacteria 44618
58 Ga0501079_0006574 3300049741 Bacteria 8741
59 Ga0501081_0055606 3300049743 Bacteria 2734
60 Ga0501035_0002731 3300049822 Bacteria 17127
61 Ga0501044_0000424 3300049823 Bacteria 52233
62 Ga0501044_0002628 3300049823 Bacteria 20433
63 Ga0501044_0003038 3300049823 Bacteria 18990
64 Ga0501044_0052159 3300049823 Bacteria 4216
65 nmdc:mga00v17_18_c1 3300050491 Bacteria 121281
66 nmdc:mga0yw44_24959_c1 3300050492 Bacteria 3391
67 Ga0500618_000007 3300053125 Bacteria 226268
68 Ga0500618_001421 3300053125 Bacteria 10690
69 Ga0500624_000280 3300053157 Bacteria 17619
70 Ga0501084_0072830 3300054114 Bacteria 2877
71 Ga0501082_0015497 3300060353 Bacteria 6562

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2984601300 2984602768 681
2 3300049593 Ga0501077_0000103 Ga0501077_0000103_33177_35489 696
3 3300060353 Ga0501082_0015497 Ga0501082_0015497_365_2677 696
4 iso_pu_bacteria 2643221664 2644354939 705
5 3300049576 Ga0501040_0008824 Ga0501040_0008824_3245_5557 711
6 3300049741 Ga0501079_0006574 Ga0501079_0006574_2334_4646 711
7 3300049743 Ga0501081_0055606 Ga0501081_0055606_246_2558 711
8 3300054114 Ga0501084_0072830 Ga0501084_0072830_413_2725 711
9 iso_pu_bacteria 8054357960 8054358528 718
10 3300005295 Ga0065707_10083148 Ga0065707_100831484 720
11 3300013105 Ga0157369_10035368 Ga0157369_100353687 735
12 3300047470 Ga0495681_0007805 Ga0495681_0007805_4322_6751 738
13 3300027312 Ga0209371_1000941 Ga0209371_10009412 745
14 3300005262 Ga0065165_1003540 Ga0065165_100354010 749
15 3300048924 Ga0496121_0001423 Ga0496121_0001423_27900_30320 750
16 3300048929 Ga0496126_0086739 Ga0496126_0086739_142_2532 750
17 iso_pu_bacteria 8056875544 8056879962 750
18 3300047472 Ga0495686_0000550 Ga0495686_0000550_10141_12558 756
19 3300049823 Ga0501044_0000424 Ga0501044_0000424_19243_21729 756
20 3300048922 Ga0496119_0010939 Ga0496119_0010939_1371_3758 757
21 iso_pu_bacteria 2854911287 2854914088 763
22 3300006946 Ga0079104_1000010 Ga0079104_1000010176 767
23 3300027111 Ga0209281_1000078 Ga0209281_100007858 767
24 3300049570 Ga0501033_0011266 Ga0501033_0011266_3606_6047 767
25 3300049572 Ga0501036_0000909 Ga0501036_0000909_1321_3762 767
26 3300049574 Ga0501038_0049446 Ga0501038_0049446_1055_3496 767
27 3300049579 Ga0501043_0052318 Ga0501043_0052318_597_3038 767
28 3300049822 Ga0501035_0002731 Ga0501035_0002731_149_2590 767
29 3300049823 Ga0501044_0002628 Ga0501044_0002628_16872_19313 767
30 iso_pu_bacteria 2854896431 2854898714 769
31 iso_pu_bacteria 2854916844 2854921683 769
32 3300049573 Ga0501037_0051728 Ga0501037_0051728_17_2452 770
33 iso_pu_bacteria 2600254933 2600375066 772
34 3300053157 Ga0500624_000280 Ga0500624_000280_8543_11053 775
35 iso_pu_bacteria 2599185236 2599719133 776
36 3300003856 Ga0058692_1001530 Ga0058692_10015302 777
37 3300046530 Ga0495654_0000759 Ga0495654_0000759_2132_4738 777
38 iso_pu_bacteria 2585427634 2585999478 778
39 3300049571 Ga0501034_0001226 Ga0501034_0001226_16301_18838 780
40 3300006038 Ga0075365_10012834 Ga0075365_100128345 781
41 3300048914 Ga0496111_0005407 Ga0496111_0005407_4627_7230 781
42 3300050492 nmdc:mga0yw44_24959_c1 nmdc:mga0yw44_24959_c1_319_3024 781
43 3300048928 Ga0496125_0002316 Ga0496125_0002316_12077_14575 782
44 3300006948 Ga0099826_10010488 Ga0099826_100104884 783
45 3300027666 Ga0209282_1024261 Ga0209282_10242613 783
46 3300048919 Ga0496116_0027909 Ga0496116_0027909_839_3337 784
47 3300053125 Ga0500618_000007 Ga0500618_000007_21571_24288 786
48 3300021327 Ga0214543_1000008 Ga0214543_1000008348 789
49 3300048922 Ga0496119_0040717 Ga0496119_0040717_384_2879 789
50 iso_pu_bacteria 2818991461 2819685229 791
51 3300006948 Ga0099826_10000246 Ga0099826_1000024616 793
52 3300027666 Ga0209282_1000135 Ga0209282_10001354 793
53 iso_pu_bacteria 2534681786 2535484003 793
54 iso_pu_bacteria 2574179768 2574430810 793
55 iso_pu_bacteria 2751185800 2753358557 793
56 3300009036 Ga0105244_10000403 Ga0105244_1000040323 794
57 3300025728 Ga0207655_1000331 Ga0207655_100033123 794
58 iso_pu_bacteria 2758568016 2758640791 794
59 iso_pu_bacteria 2915650412 2915650936 794
60 3300006042 Ga0075368_10003490 Ga0075368_100034902 795
61 3300048920 Ga0496117_0000002 Ga0496117_0000002_1396212_1398716 795
62 3300048921 Ga0496118_0000245 Ga0496118_0000245_63280_65784 795
63 3300048923 Ga0496120_0000354 Ga0496120_0000354_70641_73145 795
64 3300048925 Ga0496122_0000001 Ga0496122_0000001_767002_769506 795
65 3300048926 Ga0496123_0000001 Ga0496123_0000001_770733_773237 795
66 3300050491 nmdc:mga00v17_18_c1 nmdc:mga00v17_18_c1_117231_119735 795
67 iso_pu_bacteria 2537561587 2537874172 795
68 iso_pu_bacteria 2899803654 2899806039 795
69 3300027312 Ga0209371_1000021 Ga0209371_1000021390 796
70 3300030500 Ga0268256_1000020 Ga0268256_1000020396 796
71 iso_pu_bacteria 2513237088 2513599496 796
72 iso_pu_bacteria 2582581294 2585205306 796
73 iso_pu_bacteria 2821123053 2821124049 796
74 iso_pu_bacteria 2838736955 2838738923 796
75 iso_pu_bacteria 2840764183 2840770251 796
76 iso_pu_bacteria 2841840854 2841842821 796
77 iso_pu_bacteria 2842140634 2842142602 796
78 iso_pu_bacteria 2857531043 2857531611 796
79 iso_pu_bacteria 2921244191 2921244773 796
80 iso_pu_bacteria 2921282425 2921283479 796
81 iso_pu_bacteria 2924144063 2924150300 796
82 iso_pu_bacteria 2924150972 2924157391 796
83 iso_pu_bacteria 2924158325 2924164215 796
84 iso_pu_bacteria 2924200457 2924206018 796
85 iso_pu_bacteria 2937056579 2937063262 796
86 iso_pu_bacteria 2937098957 2937105512 796
87 iso_pu_bacteria 2957464669 2957471133 796
88 iso_pu_bacteria 2964607997 2964614574 796
89 iso_pu_bacteria 2964621998 2964628080 796
90 iso_pu_bacteria 2964685014 2964691039 796
91 iso_pu_bacteria 2967678726 2967685248 796
92 iso_pu_bacteria 2967742019 2967742166 796
93 iso_pu_bacteria 2967769361 2967774858 796
94 iso_pu_bacteria 2970019648 2970026203 796
95 iso_pu_bacteria 2970047711 2970053449 796
96 iso_pu_bacteria 2970061556 2970068247 796
97 iso_pu_bacteria 2970088815 2970094915 796
98 iso_pu_bacteria 2977551784 2977557797 796
99 iso_pu_bacteria 2977558990 2977565045 796
100 iso_pu_bacteria 8005258706 8005260930 796
101 3300013102 Ga0157371_10000073 Ga0157371_1000007390 797
102 3300013104 Ga0157370_10000367 Ga0157370_1000036718 797
103 3300048927 Ga0496124_0014751 Ga0496124_0014751_63_2573 797
104 3300049574 Ga0501038_0002871 Ga0501038_0002871_542_3073 797
105 3300053125 Ga0500618_001421 Ga0500618_001421_5389_8160 797
106 iso_pu_bacteria 2508501122 2509110132 797
107 iso_pu_bacteria 2509276019 2509378865 797
108 iso_pu_bacteria 2511231052 2511497913 797
109 iso_pu_bacteria 2512875026 2512969330 797
110 iso_pu_bacteria 2513237140 2513885234 797
111 iso_pu_bacteria 2513237156 2513984932 797
112 iso_pu_bacteria 2558860100 2558860538 797
113 iso_pu_bacteria 2850079185 2850082437 797
114 3300049823 Ga0501044_0052159 Ga0501044_0052159_103_2643 798
115 iso_pu_bacteria 2554235003 2554247293 798
116 iso_pu_bacteria 2558860242 2559294426 798
117 iso_pu_bacteria 2599185210 2599602454 798
118 iso_pu_bacteria 2600255279 2601608586 798
119 iso_pu_bacteria 2600255308 2601745360 798
120 iso_pu_bacteria 2643221582 2643918806 798
121 iso_pu_bacteria 2643221693 2644518656 798
122 iso_pu_bacteria 2808606387 2808985800 798
123 iso_pu_bacteria 2818991439 2819555916 798
124 iso_pu_bacteria 2838675328 2838676636 798
125 iso_pu_bacteria 2838714209 2838715520 798
126 iso_pu_bacteria 2838719591 2838720680 798
127 iso_pu_bacteria 2838724970 2838726276 798
128 iso_pu_bacteria 2841846520 2841847611 798
129 iso_pu_bacteria 2841859092 2841859851 798
130 iso_pu_bacteria 2842124991 2842126359 798
131 iso_pu_bacteria 2842130223 2842131529 798
132 iso_pu_bacteria 2842152218 2842153302 798
133 iso_pu_bacteria 2842170452 2842171763 798
134 iso_pu_bacteria 2842175837 2842176921 798
135 iso_pu_bacteria 2842187318 2842188628 798
136 iso_pu_bacteria 2842211629 2842212939 798
137 iso_pu_bacteria 2842224351 2842225442 798
138 iso_pu_bacteria 2842515876 2842516636 798
139 iso_pu_bacteria 2899792073 2899796701 798
140 iso_pu_bacteria 2919114240 2919115676 798
141 iso_pu_bacteria 2926754445 2926756663 798
142 iso_pu_bacteria 2933006813 2933007945 798
143 iso_pu_bacteria 2933011516 2933012723 798
144 iso_pu_bacteria 2979100975 2979105849 798
145 iso_pu_bacteria 2984509177 2984512361 798
146 iso_pu_bacteria 2984518228 2984521277 798
147 iso_pu_bacteria 2984537506 2984540572 798
148 iso_pu_bacteria 650716007 650739623 798
149 iso_pu_bacteria 8003570095 8003570679 798
150 iso_pu_bacteria 2582581316 2585333042 800
151 iso_pu_bacteria 2767802442 2770198857 800
152 iso_pu_bacteria 2775506902 2776267582 800
153 iso_pu_bacteria 2899845264 2899847050 800
154 iso_pu_bacteria 2926760298 2926760908 800
155 iso_pu_bacteria 2933594066 2933595157 800
156 iso_pu_bacteria 2979089926 2979093815 800
157 iso_pu_bacteria 2979095461 2979098802 800
158 iso_pu_bacteria 2884298095 2884300685 801
159 iso_pu_bacteria 2775506901 2776264202 802
160 iso_pu_bacteria 2894232714 2894238345 802
161 3300049568 Ga0501031_0000745 Ga0501031_0000745_802_3342 804
162 3300049569 Ga0501032_0000298 Ga0501032_0000298_6977_9517 804
163 3300049571 Ga0501034_0001379 Ga0501034_0001379_21522_24062 804
164 3300049572 Ga0501036_0000083 Ga0501036_0000083_9669_12209 804
165 3300049581 Ga0501047_0001360 Ga0501047_0001360_3067_5607 804
166 3300049586 Ga0501070_0006626 Ga0501070_0006626_3956_6496 804
167 3300049823 Ga0501044_0003038 Ga0501044_0003038_6231_8771 804
168 iso_pu_bacteria 2738541281 2738747414 804
169 iso_pu_bacteria 2738543032 2739356643 804
170 iso_pu_bacteria 2871444079 2871446952 804
171 iso_pu_bacteria 2874102143 2874107794 804
172 iso_pu_bacteria 2922158528 2922160616 804
173 iso_pu_bacteria 2924726620 2924730191 804
174 iso_pu_bacteria 2937891427 2937892453 804
175 iso_pu_bacteria 2968097103 2968100303 804
176 iso_pu_bacteria 2979779861 2979780405 804
177 iso_pu_bacteria 2996341866 2996348882 804
178 3300048926 Ga0496123_0004810 Ga0496123_0004810_4141_6777 805
179 iso_pu_bacteria 2896384573 2896388739 805
180 iso_pu_bacteria 2958122699 2958124918 806
181 iso_pu_bacteria 2970489779 2970489971 806
182 iso_pu_bacteria 2977872689 2977875155 806
183 iso_pu_bacteria 3004167301 3004169937 806
184 3300003775 Ga0055524_1000856 Ga0055524_10008566 809
185 3300025295 Ga0209564_1000856 Ga0209564_100085638 809
186 3300049571 Ga0501034_0006661 Ga0501034_0006661_3198_5771 810
187 3300003771 Ga0055526_1000091 Ga0055526_100009152 812
188 3300025295 Ga0209564_1000017 Ga0209564_100001780 812

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00122

E1-E2_ATPase

E1-E2 ATPase

327

509

0.98

PF00702

Hydrolase

haloacid dehalogenase-like hydrolase

525

725

0.93

PF00403

HMA

Heavy-metal-associated domain

23

83

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2voy-assembly1.cif.gz_I cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.9596 623 735
2b8e-assembly3.cif.gz_C copa atp binding domain 0.9572 479 739
4a48-assembly1.cif.gz_A crosstalk between cu(i) and zn(ii) homeostasis 0.9566 85 152
2b8e-assembly1.cif.gz_A copa atp binding domain 0.9431 479 735
2b8e-assembly3.cif.gz_C copa atp binding domain 0.9389 479 739
ID Description Score Start End Superfamily
af_Q557B5_1074_1224_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9648 619 748 3.40.50.1000
4a48A00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9566 85 152 3.30.70.100
af_P9WPS3_469_590_3.40.1110.10 Alpha Beta;3-Layer(aba) Sandwich;Calcium-transporting ATPase, cytoplasmic domain N;Calcium-transporting ATPase, cytoplasmic domain N 0.9561 502 620 3.40.1110.10
af_Q9S7J8_665_805_3.40.1110.10 Alpha Beta;3-Layer(aba) Sandwich;Calcium-transporting ATPase, cytoplasmic domain N;Calcium-transporting ATPase, cytoplasmic domain N 0.9535 500 619 3.40.1110.10
4bbjA04 Alpha Beta;3-Layer(aba) Sandwich;Calcium-transporting ATPase, cytoplasmic domain N;Calcium-transporting ATPase, cytoplasmic domain N 0.952 502 620 3.40.1110.10
ID Description Score Start End GO Terms
AF-V5IE67-F1-model_v4 Putative atpase cu++ transporting alpha polypeptide 0.9561 619 752 GO:0005507
GO:0005524
GO:0005802
GO:0005886
GO:0006878
GO:0015677
GO:0016887
GO:0043682
GO:0060003
AF-A0A3D1SQH1-F1-model_v4 Heavy metal translocating P-type ATPase 0.9514 496 719 GO:0005507
GO:0005524
GO:0016020
GO:0016887
GO:0043682
GO:0055070
AF-A0A2T5IVR8-F1-model_v4 Uncharacterized protein 0.9483 501 623 GO:0000166
GO:0016020
GO:0022857
AF-A0A2T4RMZ0-F1-model_v4 deleted 0.9465 627 763
AF-H6SPQ1-F1-model_v4 Heavy metal translocating P-type ATPase (EC 3.6.3.4) 0.945 85 155 GO:0016787
GO:0046872

Feature Viewer

pLDDT pTM Quality
71.94 0.51 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map