F289469

General Info

Members Datasets Scaffolds Average Seq Length
188 133 376 454

Family's Representative Sequence

Representative Sequence 3300025321|Ga0207656_10040469|Ga0207656_100404692
Length 508
Sequence MKKLLAETADRATRYLSYLPDRSVAPSPATVAALDQLGGPLPDAPADPAQIRYFGFVIGGTLPAALAANWLAGAWDQNGAMRVMSPTAARLEEIVLQWTIDLLKLPAGSDAGFVTGTTMASFTALAAARTALLQRAGWNVEEDGLFGAPPIDVVVGDEVHVSLLKALSLLGLGRSRITRVPVDGQGRIRADALPHLHDRTLLCIQAGNVNTGAFDPAEQICARAHETKAWIHVDGAFGLWAGLSPKYAPLLAGFNAADSWAIDCHKWLNVPYDSGLAVVREPQHLQAAMSITAAYLASSDKREPWHYVPESSRRARGIELWAAMRSLGRAGLAELIERNCRQAQLFAQLLADAGFTILNEVVLNQVLVSFGTPDQTRKIIAAIQSEGTCWCGGTQWQGHTAMRISVSSWATTDEDVRRSVTAIVSRNPEIRRPSISRANCVYHCWQPTEFAMPQGKTAASPMFLPALRTNAGWILQAVCLRKIRSAISAPLRRWQNSFPTFPNPSQIL

Samples

Sample ID Description Type Environment
1 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
24 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
25 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
26 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
27 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
39 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
40 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
41 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
42 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
43 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
59 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
60 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
62 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
63 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
64 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
65 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
66 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
67 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
68 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
69 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
70 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
71 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
72 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
73 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
74 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
75 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
76 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
77 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
78 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
79 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
80 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
81 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
82 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
83 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
84 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
85 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
86 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
87 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
88 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
89 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
90 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
91 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
92 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
93 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
94 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
95 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
96 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
97 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
98 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
99 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
100 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
101 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
102 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
103 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
104 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
105 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
106 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
107 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
108 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
109 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
110 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
111 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
112 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
113 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
118 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
119 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
120 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
121 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
122 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
123 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
124 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
125 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
126 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
127 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
128 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
129 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
130 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
131 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
132 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
133 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.81
Metatranscriptomes 0.53
Isolates 2.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.53
Nodule 0.53
Rhizoplane 4.26
Rhizosphere 87.77
Stem 0
Stem Tuber 0
Unclassified 5.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207656_10040469 3300025321 Unclassified 1976
2 rootL2_10070174 3300003322 Bacteria 2381
3 Ga0070683_100015139 3300005329 Bacteria 6769
4 Ga0070683_100021524 3300005329 Bacteria 5755
5 Ga0070683_100022615 3300005329 Bacteria 5622
6 Ga0070683_100040672 3300005329 Bacteria 4274
7 Ga0070691_10017167 3300005341 Bacteria 3330
8 Ga0070713_100001056 3300005436 Bacteria 17606
9 Ga0070713_100006870 3300005436 Bacteria 7932
10 Ga0070713_100008118 3300005436 Bacteria 7428
11 Ga0070713_100010797 3300005436 Bacteria 6617
12 Ga0070713_100075845 3300005436 Bacteria 2853
13 Ga0070711_100001498 3300005439 Bacteria 12834
14 Ga0070700_100022560 3300005441 Bacteria 3673
15 Ga0070708_100000290 3300005445 Bacteria 37791
16 Ga0070708_100002661 3300005445 Bacteria 13833
17 Ga0070708_100003966 3300005445 Bacteria 11615
18 Ga0070708_100007112 3300005445 Bacteria 8930
19 Ga0070708_100009874 3300005445 Bacteria 7712
20 Ga0070706_100017583 3300005467 Bacteria 6598
21 Ga0070706_100022122 3300005467 Bacteria 5854
22 Ga0070706_100028011 3300005467 Bacteria 5183
23 Ga0070706_100214809 3300005467 Bacteria 1795
24 Ga0070707_100024585 3300005468 Bacteria 5706
25 Ga0070707_100038557 3300005468 Bacteria 4564
26 Ga0070707_100045376 3300005468 Bacteria 4207
27 Ga0070698_100116435 3300005471 Unclassified 2636
28 Ga0070699_100001027 3300005518 Bacteria 25921
29 Ga0070699_100021107 3300005518 Bacteria 5613
30 Ga0070699_100062939 3300005518 Unclassified 3216
31 Ga0070699_100095527 3300005518 Unclassified 2602
32 Ga0070684_100000276 3300005535 Bacteria 35618
33 Ga0070684_100037389 3300005535 Bacteria 4164
34 Ga0070684_100041011 3300005535 Bacteria 3988
35 Ga0070684_100226437 3300005535 Bacteria 1707
36 Ga0070697_100014567 3300005536 Bacteria 6175
37 Ga0070697_100022916 3300005536 Bacteria 4965
38 Ga0070697_100049861 3300005536 Bacteria 3397
39 Ga0070665_100107807 3300005548 Bacteria 2788
40 Ga0068857_100021636 3300005577 Bacteria 5659
41 Ga0068856_100000677 3300005614 Bacteria 36911
42 Ga0068852_100214936 3300005616 Bacteria 1826
43 Ga0068851_10089294 3300005834 Unclassified 1621
44 Ga0070717_10170561 3300006028 Bacteria 1892
45 Ga0070717_10259112 3300006028 Bacteria 1538
46 Ga0070712_100002874 3300006175 Bacteria 10670
47 Ga0070712_100141020 3300006175 Unclassified 1839
48 Ga0075367_10028805 3300006178 Bacteria 3171
49 Ga0075434_100099406 3300006871 Bacteria 2915
50 Ga0075436_100005954 3300006914 Bacteria 8377
51 Ga0075435_100045145 3300007076 Bacteria 3531
52 Ga0075435_100070456 3300007076 Bacteria 2854
53 Ga0099795_10019297 3300007788 Unclassified 2204
54 Ga0105251_10065273 3300009011 Bacteria 1704
55 Ga0105240_10029561 3300009093 Bacteria 7136
56 Ga0105245_10052538 3300009098 Bacteria 3655
57 Ga0114129_10001252 3300009147 Bacteria 33867
58 Ga0114129_10019382 3300009147 Bacteria 9688
59 Ga0105241_10053020 3300009174 Unclassified 3100
60 Ga0105238_10030652 3300009551 Bacteria 5475
61 Ga0157370_10196303 3300013104 Bacteria 1873
62 Ga0157369_10004676 3300013105 Bacteria 16090
63 Ga0157369_10044166 3300013105 Bacteria 4851
64 Ga0157378_10006353 3300013297 Bacteria 10340
65 Ga0163162_10006013 3300013306 Bacteria 11745
66 Ga0157372_10041463 3300013307 Bacteria 5090
67 Ga0157372_10167050 3300013307 Bacteria 2545
68 Ga0157372_10236325 3300013307 Bacteria 2120
69 Ga0157375_10012851 3300013308 Bacteria 7436
70 Ga0213872_10000071 3300021361 Bacteria 91423
71 Ga0213876_10008176 3300021384 Bacteria 5664
72 Ga0213875_10003170 3300021388 Bacteria 9456
73 Ga0224572_1005237 3300024225 Bacteria 2303
74 Ga0207699_10002541 3300025906 Bacteria 8605
75 Ga0207684_10015848 3300025910 Bacteria 6480
76 Ga0207684_10018136 3300025910 Bacteria 6030
77 Ga0207695_10021941 3300025913 Bacteria 7267
78 Ga0207693_10000184 3300025915 Bacteria 57100
79 Ga0207693_10062791 3300025915 Bacteria 2910
80 Ga0207652_10217646 3300025921 Bacteria 1721
81 Ga0207646_10004789 3300025922 Bacteria 14527
82 Ga0207646_10031852 3300025922 Bacteria 4772
83 Ga0207687_10178575 3300025927 Bacteria 1643
84 Ga0207700_10007145 3300025928 Bacteria 6805
85 Ga0207700_10007751 3300025928 Bacteria 6597
86 Ga0207700_10017071 3300025928 Bacteria 4837
87 Ga0207700_10211706 3300025928 Unclassified 1639
88 Ga0207661_10003311 3300025944 Bacteria 11178
89 Ga0207661_10019353 3300025944 Bacteria 5074
90 Ga0207661_10033853 3300025944 Bacteria 3969
91 Ga0207679_10041644 3300025945 Bacteria 3295
92 Ga0207679_10092254 3300025945 Bacteria 2346
93 Ga0207677_10053312 3300026023 Bacteria 2752
94 Ga0207708_10020011 3300026075 Bacteria 5047
95 Ga0207702_10006588 3300026078 Bacteria 9983
96 Ga0207674_10000318 3300026116 Bacteria 61337
97 Ga0207698_10014571 3300026142 Bacteria 5233
98 Ga0265356_1000193 3300028017 Bacteria 11493
99 Ga0265338_10000219 3300028800 Bacteria 106381
100 Ga0265760_10000830 3300031090 Bacteria 8887
101 Ga0265320_10024196 3300031240 Bacteria 3217
102 Ga0307508_10007506 3300031616 Bacteria 10140
103 Ga0307516_10042234 3300031730 Bacteria 4525
104 Ga0307416_100029234 3300032002 Bacteria 4113
105 Ga0373923_0001378 3300035111 Bacteria 6932
106 Ga0373955_0039598 3300035172 Bacteria 2517
107 Ga0316574_0023498 3300035398 Bacteria 3680
108 Ga0373935_0004992 3300035692 Bacteria 7809
109 Ga0373927_0005132 3300035695 Bacteria 9062
110 Ga0373927_0034929 3300035695 Bacteria 3269
111 Ga0373947_0001613 3300035725 Bacteria 13832
112 Ga0373937_0031747 3300036401 Bacteria 4787
113 Ga0436364_0103544 3300037853 Bacteria 1908
114 Ga0436364_1042639 3300037853 Bacteria 51100
115 Ga0436361_0895187 3300039447 Bacteria 79068
116 Ga0436361_1200954 3300039447 Bacteria 1752
117 Ga0466963_0015307 3300044694 Bacteria 4746
118 Ga0495592_0035806 3300046454 Bacteria 3740
119 Ga0495629_0109309 3300046459 Bacteria 1928
120 Ga0495638_0057609 3300046460 Bacteria 2409
121 Ga0495651_0007099 3300046462 Bacteria 8561
122 Ga0495653_0002864 3300046463 Bacteria 13787
123 Ga0495650_0016591 3300046471 Bacteria 3725
124 Ga0495580_0000800 3300046472 Bacteria 27228
125 Ga0495580_0003531 3300046472 Bacteria 13281
126 Ga0495605_0017415 3300046474 Bacteria 3870
127 Ga0495608_0003034 3300046511 Bacteria 11985
128 Ga0495630_0011811 3300046517 Bacteria 6329
129 Ga0495666_0048385 3300046526 Bacteria 2048
130 Ga0495652_0054487 3300046529 Bacteria 3405
131 Ga0495665_0004195 3300046531 Bacteria 7776
132 Ga0495586_0046131 3300046535 Bacteria 2349
133 Ga0495587_0056725 3300046536 Bacteria 2304
134 Ga0495635_0012614 3300046663 Bacteria 5927
135 Ga0495657_0079186 3300046675 Bacteria 2128
136 Ga0495599_0052423 3300046678 Unclassified 2556
137 Ga0495646_0004606 3300046680 Bacteria 8687
138 Ga0495669_0001928 3300046684 Bacteria 8518
139 Ga0495669_0006118 3300046684 Bacteria 5020
140 Ga0495613_0077010 3300046689 Bacteria 2427
141 Ga0495624_0004069 3300046690 Bacteria 10761
142 Ga0495670_0016424 3300046691 Bacteria 3638
143 Ga0495589_0003253 3300046794 Bacteria 8849
144 Ga0495604_0047861 3300047317 Bacteria 3328
145 Ga0495674_0010473 3300047319 Bacteria 8778
146 Ga0495675_0000974 3300047444 Bacteria 17395
147 Ga0495593_0001250 3300047673 Bacteria 14908
148 Ga0495602_0140924 3300048088 Bacteria 1908
149 Ga0495614_0011254 3300048089 Bacteria 3937
150 Ga0495626_0028147 3300048091 Bacteria 2727
151 Ga0496102_0005182 3300048905 Bacteria 11066
152 Ga0496104_0047147 3300048907 Bacteria 4061
153 Ga0496105_0046723 3300048908 Bacteria 3573
154 Ga0496105_0196574 3300048908 Bacteria 1647
155 Ga0496110_0021088 3300048913 Bacteria 5508
156 Ga0496110_0110867 3300048913 Bacteria 2466
157 Ga0496112_0001948 3300048915 Bacteria 16302
158 Ga0496115_0015618 3300048918 Bacteria 5764
159 Ga0496126_0005892 3300048929 Bacteria 13825
160 Ga0496126_0012670 3300048929 Bacteria 8628
161 Ga0501031_0047937 3300049568 Bacteria 2785
162 Ga0501038_0234435 3300049574 Bacteria 1459
163 Ga0501042_0026790 3300049578 Bacteria 4050
164 Ga0501048_0006724 3300049582 Bacteria 8734
165 Ga0501071_0016598 3300049587 Bacteria 5065
166 Ga0501071_0056353 3300049587 Bacteria 2839
167 Ga0501073_0015841 3300049589 Bacteria 5463
168 Ga0501076_0003214 3300049592 Bacteria 11412
169 Ga0501076_0127276 3300049592 Bacteria 2065
170 Ga0501080_0103905 3300049742 Bacteria 2635
171 Ga0501081_0006624 3300049743 Bacteria 7528
172 Ga0501045_0041041 3300049824 Bacteria 3366
173 nmdc:mga05p37_261496_c1 3300050507 Bacteria 2071
174 nmdc:mga0qj67_50596_c1 3300050509 Bacteria 3286
175 nmdc:mga0qj67_70237_c1 3300050509 Bacteria 2793
176 nmdc:mga06r32_9466_c1 3300050510 Bacteria 8793
177 nmdc:mga0rr50_18561_c1 3300050513 Bacteria 4675
178 nmdc:mga0rr50_65839_c1 3300050513 Unclassified 2746
179 nmdc:mga08x19_1103_c1 3300050514 Bacteria 16821
180 nmdc:mga08x19_195_c1 3300050514 Bacteria 47279
181 nmdc:mga08x19_50605_c1 3300050514 Bacteria 2666
182 nmdc:mga0a205_38075_c1 3300050515 Bacteria 2494
183 Ga0495612_0058722 3300053078 Bacteria 1590
184 2515681468 2515154122 Bacteria 8609520
185 2792837767 2791355137 Bacteria 9654227
186 2792839336 2791355137 Bacteria 9654227
187 2902686082 2902682994 Bacteria 8951596
188 2904622321 2904615490 Bacteria 10047340
189 Ga0207656_10040469
190 rootL2_10070174
191 Ga0070683_100015139
192 Ga0070683_100021524
193 Ga0070683_100022615
194 Ga0070683_100040672
195 Ga0070691_10017167
196 Ga0070713_100001056
197 Ga0070713_100006870
198 Ga0070713_100008118
199 Ga0070713_100010797
200 Ga0070713_100075845
201 Ga0070711_100001498
202 Ga0070700_100022560
203 Ga0070708_100000290
204 Ga0070708_100002661
205 Ga0070708_100003966
206 Ga0070708_100007112
207 Ga0070708_100009874
208 Ga0070706_100017583
209 Ga0070706_100022122
210 Ga0070706_100028011
211 Ga0070706_100214809
212 Ga0070707_100024585
213 Ga0070707_100038557
214 Ga0070707_100045376
215 Ga0070698_100116435
216 Ga0070699_100001027
217 Ga0070699_100021107
218 Ga0070699_100062939
219 Ga0070699_100095527
220 Ga0070684_100000276
221 Ga0070684_100037389
222 Ga0070684_100041011
223 Ga0070684_100226437
224 Ga0070697_100014567
225 Ga0070697_100022916
226 Ga0070697_100049861
227 Ga0070665_100107807
228 Ga0068857_100021636
229 Ga0068856_100000677
230 Ga0068852_100214936
231 Ga0068851_10089294
232 Ga0070717_10170561
233 Ga0070717_10259112
234 Ga0070712_100002874
235 Ga0070712_100141020
236 Ga0075367_10028805
237 Ga0075434_100099406
238 Ga0075436_100005954
239 Ga0075435_100045145
240 Ga0075435_100070456
241 Ga0099795_10019297
242 Ga0105251_10065273
243 Ga0105240_10029561
244 Ga0105245_10052538
245 Ga0114129_10001252
246 Ga0114129_10019382
247 Ga0105241_10053020
248 Ga0105238_10030652
249 Ga0157370_10196303
250 Ga0157369_10004676
251 Ga0157369_10044166
252 Ga0157378_10006353
253 Ga0163162_10006013
254 Ga0157372_10041463
255 Ga0157372_10167050
256 Ga0157372_10236325
257 Ga0157375_10012851
258 Ga0213872_10000071
259 Ga0213876_10008176
260 Ga0213875_10003170
261 Ga0224572_1005237
262 Ga0207699_10002541
263 Ga0207684_10015848
264 Ga0207684_10018136
265 Ga0207695_10021941
266 Ga0207693_10000184
267 Ga0207693_10062791
268 Ga0207652_10217646
269 Ga0207646_10004789
270 Ga0207646_10031852
271 Ga0207687_10178575
272 Ga0207700_10007145
273 Ga0207700_10007751
274 Ga0207700_10017071
275 Ga0207700_10211706
276 Ga0207661_10003311
277 Ga0207661_10019353
278 Ga0207661_10033853
279 Ga0207679_10041644
280 Ga0207679_10092254
281 Ga0207677_10053312
282 Ga0207708_10020011
283 Ga0207702_10006588
284 Ga0207674_10000318
285 Ga0207698_10014571
286 Ga0265356_1000193
287 Ga0265338_10000219
288 Ga0265760_10000830
289 Ga0265320_10024196
290 Ga0307508_10007506
291 Ga0307516_10042234
292 Ga0307416_100029234
293 Ga0373923_0001378
294 Ga0373955_0039598
295 Ga0316574_0023498
296 Ga0373935_0004992
297 Ga0373927_0005132
298 Ga0373927_0034929
299 Ga0373947_0001613
300 Ga0373937_0031747
301 Ga0436364_0103544
302 Ga0436364_1042639
303 Ga0436361_0895187
304 Ga0436361_1200954
305 Ga0466963_0015307
306 Ga0495592_0035806
307 Ga0495629_0109309
308 Ga0495638_0057609
309 Ga0495651_0007099
310 Ga0495653_0002864
311 Ga0495650_0016591
312 Ga0495580_0000800
313 Ga0495580_0003531
314 Ga0495605_0017415
315 Ga0495608_0003034
316 Ga0495630_0011811
317 Ga0495666_0048385
318 Ga0495652_0054487
319 Ga0495665_0004195
320 Ga0495586_0046131
321 Ga0495587_0056725
322 Ga0495635_0012614
323 Ga0495657_0079186
324 Ga0495599_0052423
325 Ga0495646_0004606
326 Ga0495669_0001928
327 Ga0495669_0006118
328 Ga0495613_0077010
329 Ga0495624_0004069
330 Ga0495670_0016424
331 Ga0495589_0003253
332 Ga0495604_0047861
333 Ga0495674_0010473
334 Ga0495675_0000974
335 Ga0495593_0001250
336 Ga0495602_0140924
337 Ga0495614_0011254
338 Ga0495626_0028147
339 Ga0496102_0005182
340 Ga0496104_0047147
341 Ga0496105_0046723
342 Ga0496105_0196574
343 Ga0496110_0021088
344 Ga0496110_0110867
345 Ga0496112_0001948
346 Ga0496115_0015618
347 Ga0496126_0005892
348 Ga0496126_0012670
349 Ga0501031_0047937
350 Ga0501038_0234435
351 Ga0501042_0026790
352 Ga0501048_0006724
353 Ga0501071_0016598
354 Ga0501071_0056353
355 Ga0501073_0015841
356 Ga0501076_0003214
357 Ga0501076_0127276
358 Ga0501080_0103905
359 Ga0501081_0006624
360 Ga0501045_0041041
361 nmdc:mga05p37_261496_c1
362 nmdc:mga0qj67_50596_c1
363 nmdc:mga0qj67_70237_c1
364 nmdc:mga06r32_9466_c1
365 nmdc:mga0rr50_18561_c1
366 nmdc:mga0rr50_65839_c1
367 nmdc:mga08x19_1103_c1
368 nmdc:mga08x19_195_c1
369 nmdc:mga08x19_50605_c1
370 nmdc:mga0a205_38075_c1
371 Ga0495612_0058722
372 2515681468
373 2792837767
374 2792839336
375 2902686082
376 2904622321

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00282

Pyridoxal_deC

Pyridoxal-dependent decarboxylase conserved domain

52

371

0.88

PF00266

Aminotran_5

Aminotransferase class-V

113

241

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6khp-assembly1.cif.gz_A-2 crystal structure of oryza sativa tdc with plp and tryptamine 0.9268 9 457
4e1o-assembly1.cif.gz_A human histidine decarboxylase complex with histidine methyl ester (hme) 0.912 9 457
6zek-assembly1.cif.gz_C crystal structure of mouse csad 0.9105 8 455
2okj-assembly1.cif.gz_A the x-ray crystal structure of the 67kda isoform of glutamic acid decarboxylase (gad67) 0.9102 7 456
6eem-assembly1.cif.gz_B crystal structure of papaver somniferum tyrosine decarboxylase in complex with l-tyrosine 0.9076 7 457
ID Description Score Start End Superfamily
af_Q8RY79_386_490_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9435 367 457 3.90.1150.10
3rbfA03 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9417 368 457 3.90.1150.10
af_Q7G6M2_418_525_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.939 367 457 3.90.1150.10
af_O45137_430_523_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9375 370 457 3.90.1150.10
af_Q05733_379_483_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9321 367 457 3.90.1150.10
ID Description Score Start End GO Terms
AF-A0A2W4QDE6-F1-model_v4 Aspartate aminotransferase family protein 1.001 366 457 GO:0008483
AF-A0A7S7NMA8-F1-model_v4 Aspartate aminotransferase family protein 0.9916 13 457 GO:0008483
GO:0016831
GO:0019752
GO:0030170
AF-A0A534P2J7-F1-model_v4 Aspartate aminotransferase family protein 0.9891 70 456 GO:0008483
GO:0016831
GO:0019752
GO:0030170
AF-A0A5K7XEZ7-F1-model_v4 Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28) 0.989 7 457 GO:0004058
GO:0019752
GO:0030170
AF-A0A1Q7H3Z0-F1-model_v4 Aspartate aminotransferase family protein 0.9882 85 456 GO:0008483
GO:0016831
GO:0019752
GO:0030170

Map