F289456

General Info

Members Datasets Scaffolds Average Seq Length
188 147 376 332

Family's Representative Sequence

Representative Sequence 3300021388|Ga0213875_10005888|Ga0213875_100058881
Length 366
Sequence MAITLLGNSPAGMCPSSEAGIGDGIHVRENQTVLPAGRHGVPFDFADPALATAVSAGLAKVEDLLRTVVLSDLQFATETSRYLVDAGGKRFRPLFTLLAAQFGDPDTEHVITAAAAVELIHLATLYHDDVMDEATMRRGAVSANARWDNTIAILTGDFLFARASKLVADLGTEAGHIMASTFSQLVTGQMRETTGPSEGQDPVTHYLTVVNEKTGSLIATAGRFGTMFSGASPEQVDALTAYGNAIGTAFQISDDVIDIVSPAGESGKTPGTDLREGVRTLPMLYALAERDPREARLRELLAGALSDDALVDEALDLLRGSAGLERARRILEDYAGSARSALEVLPDCAARAALVSLSEYVVARTY

Samples

Sample ID Description Type Environment
1 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
4 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
5 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
6 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
7 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
8 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
9 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
10 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
11 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
12 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
13 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
19 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
20 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
21 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
22 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
23 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
24 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
37 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
39 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
40 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
41 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
42 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
43 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
44 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
45 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
46 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
47 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
48 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
49 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
50 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
51 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
52 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
53 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
54 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
55 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
56 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
57 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
58 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
59 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
60 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
61 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
62 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
63 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
64 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
65 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
66 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
67 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
68 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
69 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
70 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
71 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
72 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
73 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
74 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
75 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
76 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
77 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
78 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
79 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
80 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
81 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
82 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
83 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
84 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
85 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
102 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
103 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
104 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
105 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
106 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
107 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
108 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
109 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
110 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
113 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
114 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
115 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
116 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
117 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
118 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
119 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
120 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
121 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
122 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
123 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
124 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
125 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
126 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
127 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
128 2558860280 Kutzneria sp. 744 Isolate Unclassified
129 2582580736 Prauserella sp. Am3 Isolate Unclassified
130 2643221615 Nocardioides sp. Root224 Isolate Unclassified
131 2643221641 Nocardioides sp. Root122 Isolate Unclassified
132 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
133 2739367898 Nocardioides sp. CF479 Isolate Unclassified
134 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
135 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
136 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
137 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
138 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
139 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
140 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
141 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
142 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
143 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
144 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere
145 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
146 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
147 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 89.36
Metatranscriptomes 0
Isolates 10.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.77
Nodule 0.53
Rhizoplane 10.64
Rhizosphere 64.89
Stem 0
Stem Tuber 0.53
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0213875_10005888 3300021388 Bacteria 6515
2 Ga0070683_100094993 3300005329 Bacteria 2802
3 Ga0070683_100372714 3300005329 Bacteria 1360
4 Ga0070710_10000264 3300005437 Bacteria 24986
5 Ga0070663_100018041 3300005455 Bacteria 4618
6 Ga0068853_100251205 3300005539 Bacteria 1623
7 Ga0070665_100000516 3300005548 Bacteria 55112
8 Ga0070665_100192861 3300005548 Bacteria 2038
9 Ga0068854_100319211 3300005578 Bacteria 1262
10 Ga0081455_10000071 3300005937 Bacteria 110373
11 Ga0081455_10032200 3300005937 Bacteria 4728
12 Ga0081539_10027992 3300005985 Bacteria 3554
13 Ga0075365_10009916 3300006038 Bacteria 5515
14 Ga0075365_10085366 3300006038 Bacteria 2144
15 Ga0075363_100010203 3300006048 Bacteria 4446
16 Ga0075364_10005604 3300006051 Bacteria 7320
17 Ga0075362_10004526 3300006177 Bacteria 5008
18 Ga0075367_10013902 3300006178 Bacteria 4343
19 Ga0075370_10004040 3300006353 Bacteria 7054
20 Ga0075370_10004357 3300006353 Bacteria 6861
21 Ga0075431_100085000 3300006847 Bacteria 3266
22 Ga0075429_100227980 3300006880 Bacteria 1632
23 Ga0105248_10393137 3300009177 Bacteria 1561
24 Ga0105238_10049808 3300009551 Bacteria 4217
25 Ga0163162_10028011 3300013306 Bacteria 5573
26 Ga0157375_10067487 3300013308 Bacteria 3574
27 Ga0157375_10386765 3300013308 Bacteria 1566
28 Ga0163163_10063146 3300014325 Bacteria 3671
29 Ga0157376_10624341 3300014969 Bacteria 1075
30 Ga0207692_10000049 3300025898 Bacteria 35853
31 Ga0207694_10092869 3300025924 Bacteria 2383
32 Ga0207704_10372869 3300025938 Bacteria 1118
33 Ga0207667_10018086 3300025949 Bacteria 7913
34 Ga0207668_10012988 3300025972 Bacteria 5117
35 Ga0207677_10024322 3300026023 Bacteria 3761
36 Ga0207639_10077643 3300026041 Bacteria 2618
37 Ga0207678_10000264 3300026067 Bacteria 47439
38 Ga0207708_10009278 3300026075 Bacteria 7284
39 Ga0207674_10170309 3300026116 Bacteria 2131
40 Ga0207675_100018909 3300026118 Bacteria 6431
41 Ga0207683_10055226 3300026121 Bacteria 3483
42 Ga0209813_10001272 3300027866 Bacteria 5634
43 Ga0268266_10019038 3300028379 Bacteria 5847
44 Ga0265338_10024329 3300028800 Bacteria 6190
45 Ga0307511_10000590 3300030521 Bacteria 38846
46 Ga0316177_1018473 3300030731 Bacteria 5135
47 Ga0316176_1096916 3300030732 Bacteria 2561
48 Ga0314311_1221431 3300030733 Bacteria 7404
49 Ga0316180_1102112 3300030736 Bacteria 3133
50 Ga0265325_10000479 3300031241 Bacteria 28912
51 Ga0265339_10000438 3300031249 Bacteria 32642
52 Ga0265331_10000014 3300031250 Bacteria 294002
53 Ga0265327_10000004 3300031251 Bacteria 803973
54 Ga0307509_10151733 3300031507 Bacteria 2231
55 Ga0265313_10000332 3300031595 Bacteria 51521
56 Ga0265342_10013656 3300031712 Bacteria 5433
57 Ga0307413_10075387 3300031824 Bacteria 2141
58 Ga0307413_10095848 3300031824 Bacteria 1946
59 Ga0307518_10001373 3300031838 Bacteria 18095
60 Ga0307407_10221009 3300031903 Bacteria 1281
61 Ga0307409_100192451 3300031995 Bacteria 1817
62 Ga0307416_100231881 3300032002 Bacteria 1781
63 Ga0307411_10004770 3300032005 Bacteria 6561
64 Ga0307507_10017521 3300033179 Bacteria 8218
65 Ga0373956_0008616 3300035119 Bacteria 4131
66 Ga0436364_0823558 3300037853 Bacteria 25963
67 Ga0451789_1237463 3300041443 Bacteria 2387
68 Ga0451791_0854887 3300041451 Bacteria 4051
69 Ga0451793_0505848 3300041452 Bacteria 4112
70 Ga0451797_0741649 3300041453 Bacteria 8445
71 Ga0451800_1049164 3300041459 Bacteria 2036
72 Ga0451843_1004797 3300041509 Bacteria 2452
73 Ga0466969_0030866 3300044656 Bacteria 2729
74 Ga0466972_0006704 3300044658 Bacteria 5778
75 Ga0466965_0015592 3300044683 Bacteria 3610
76 Ga0466965_0016079 3300044683 Bacteria 3555
77 Ga0466965_0048159 3300044683 Bacteria 2111
78 Ga0466961_0002808 3300044693 Bacteria 10832
79 Ga0466961_0114579 3300044693 Bacteria 1694
80 Ga0466963_0028091 3300044694 Bacteria 3609
81 Ga0466964_0148492 3300044706 Bacteria 1084
82 Ga0466968_0013339 3300044735 Bacteria 3231
83 Ga0466970_0011504 3300044765 Bacteria 4511
84 Ga0466970_0049844 3300044765 Bacteria 2233
85 Ga0466960_0005195 3300044901 Bacteria 5145
86 Ga0466960_0037317 3300044901 Bacteria 2279
87 Ga0466960_0108862 3300044901 Bacteria 1437
88 Ga0466967_0040441 3300045976 Bacteria 4014
89 Ga0466967_0071521 3300045976 Bacteria 3106
90 Ga0466967_0112414 3300045976 Bacteria 2504
91 Ga0495600_0079488 3300046809 Bacteria 2141
92 Ga0496101_0193833 3300048904 Bacteria 1569
93 Ga0496101_0251146 3300048904 Bacteria 1378
94 Ga0496102_0096506 3300048905 Bacteria 2740
95 Ga0496104_0026690 3300048907 Bacteria 5337
96 Ga0496105_0038016 3300048908 Bacteria 3965
97 Ga0496108_0083300 3300048911 Bacteria 2713
98 Ga0496109_0023812 3300048912 Bacteria 5435
99 Ga0496109_0119636 3300048912 Bacteria 2453
100 Ga0496110_0099842 3300048913 Bacteria 2602
101 Ga0496114_0000286 3300048917 Bacteria 36864
102 Ga0496114_0006849 3300048917 Bacteria 8977
103 Ga0496114_0010768 3300048917 Bacteria 7280
104 Ga0496114_0042055 3300048917 Bacteria 3787
105 Ga0496114_0055502 3300048917 Bacteria 3304
106 Ga0496115_0319579 3300048918 Bacteria 1270
107 Ga0496124_0048019 3300048927 Bacteria 3650
108 Ga0501031_0171788 3300049568 Bacteria 1416
109 Ga0501033_0105516 3300049570 Bacteria 2053
110 Ga0501033_0162587 3300049570 Bacteria 1606
111 Ga0501034_0007061 3300049571 Bacteria 11978
112 Ga0501034_0042177 3300049571 Bacteria 4619
113 Ga0501036_0049523 3300049572 Bacteria 3557
114 Ga0501036_0168169 3300049572 Bacteria 1847
115 Ga0501036_0220359 3300049572 Bacteria 1593
116 Ga0501037_0148074 3300049573 Bacteria 1679
117 Ga0501038_0091877 3300049574 Bacteria 2542
118 Ga0501039_0134981 3300049575 Bacteria 1937
119 Ga0501040_0167181 3300049576 Bacteria 1556
120 Ga0501041_0016617 3300049577 Bacteria 4378
121 Ga0501041_0101264 3300049577 Bacteria 1783
122 Ga0501041_0117922 3300049577 Bacteria 1648
123 Ga0501042_0015142 3300049578 Bacteria 5274
124 Ga0501042_0200168 3300049578 Bacteria 1440
125 Ga0501043_0011313 3300049579 Bacteria 6983
126 Ga0501046_0005772 3300049580 Bacteria 11050
127 Ga0501046_0034602 3300049580 Bacteria 4075
128 Ga0501047_0032489 3300049581 Bacteria 5038
129 Ga0501047_0163607 3300049581 Bacteria 2096
130 Ga0501048_0274000 3300049582 Bacteria 1199
131 Ga0501068_0029598 3300049584 Bacteria 3243
132 Ga0501069_0022621 3300049585 Bacteria 3421
133 Ga0501069_0133156 3300049585 Bacteria 1424
134 Ga0501070_0012865 3300049586 Bacteria 7051
135 Ga0501070_0033529 3300049586 Bacteria 4297
136 Ga0501070_0179297 3300049586 Bacteria 1744
137 Ga0501070_0321632 3300049586 Bacteria 1258
138 Ga0501071_0008364 3300049587 Bacteria 6836
139 Ga0501072_0351973 3300049588 Bacteria 1169
140 Ga0501073_0016698 3300049589 Bacteria 5318
141 Ga0501075_0201077 3300049591 Bacteria 1519
142 Ga0501076_0054729 3300049592 Bacteria 3162
143 Ga0501079_0324993 3300049741 Bacteria 1204
144 Ga0501081_0061850 3300049743 Bacteria 2596
145 Ga0501081_0086439 3300049743 Bacteria 2201
146 Ga0501044_0018160 3300049823 Bacteria 7543
147 Ga0501044_0039437 3300049823 Bacteria 4928
148 Ga0501045_0054713 3300049824 Bacteria 2918
149 Ga0501045_0069109 3300049824 Bacteria 2596
150 nmdc:mga03683_7126_c1 3300050489 Bacteria 3866
151 nmdc:mga03n38_63597_c1 3300050490 Bacteria 1687
152 nmdc:mga00v17_118172_c1 3300050491 Bacteria 1687
153 nmdc:mga0yw44_129580_c1 3300050492 Bacteria 1632
154 nmdc:mga0yw44_6786_c1 3300050492 Bacteria 5564
155 nmdc:mga0yw44_85860_c1 3300050492 Bacteria 1981
156 nmdc:mga06z11_116912_c1 3300050494 Bacteria 1483
157 nmdc:mga06z11_25805_c1 3300050494 Bacteria 2790
158 nmdc:mga06z11_33752_c1 3300050494 Bacteria 2506
159 nmdc:mga04h51_4027_c1 3300050495 Bacteria 3622
160 nmdc:mga07m45_9579_c1 3300050496 Bacteria 5032
161 nmdc:mga09592_58737_c1 3300050508 Bacteria 3252
162 nmdc:mga06r32_4197_c1 3300050510 Bacteria 3542
163 Ga0500644_0000148 3300053088 Bacteria 43939
164 Ga0500658_0098100 3300053134 Bacteria 1276
165 Ga0500559_0011588 3300053136 Bacteria 3765
166 Ga0500573_0052607 3300053140 Bacteria 2341
167 Ga0501084_0109040 3300054114 Bacteria 2326
168 Ga0501082_0068473 3300060353 Bacteria 3056
169 2559428662 2558860280 Bacteria 11429938
170 2583148905 2582580736 Bacteria 5325865
171 2644093087 2643221615 Bacteria 5487866
172 2644229706 2643221641 Bacteria 4490190
173 2644322698 2643221657 Bacteria 5490246
174 2740168265 2739367898 Bacteria 4367674
175 2753069854 2751185734 Bacteria 8863695
176 2795781356 2795385470 Bacteria 8317180
177 2795793359 2795385472 Bacteria 6627535
178 2855388135 2855386786 Bacteria 4752232
179 2866617218 2866612099 Bacteria 7543886
180 2870727635 2870721527 Bacteria 9689237
181 2899364781 2899359706 Bacteria 10940472
182 2899373785 2899370129 Bacteria 6781179
183 2917741252 2917736166 Bacteria 9690793
184 2956940910 2956939328 Bacteria 3474458
185 3001120598 3001119090 Bacteria 3449530
186 8003316423 8003314358 Bacteria 10575343
187 8047719895 8047710418 Bacteria 11023148
188 8054614336 8054609563 Bacteria 5170090
189 Ga0213875_10005888
190 Ga0070683_100094993
191 Ga0070683_100372714
192 Ga0070710_10000264
193 Ga0070663_100018041
194 Ga0068853_100251205
195 Ga0070665_100000516
196 Ga0070665_100192861
197 Ga0068854_100319211
198 Ga0081455_10000071
199 Ga0081455_10032200
200 Ga0081539_10027992
201 Ga0075365_10009916
202 Ga0075365_10085366
203 Ga0075363_100010203
204 Ga0075364_10005604
205 Ga0075362_10004526
206 Ga0075367_10013902
207 Ga0075370_10004040
208 Ga0075370_10004357
209 Ga0075431_100085000
210 Ga0075429_100227980
211 Ga0105248_10393137
212 Ga0105238_10049808
213 Ga0163162_10028011
214 Ga0157375_10067487
215 Ga0157375_10386765
216 Ga0163163_10063146
217 Ga0157376_10624341
218 Ga0207692_10000049
219 Ga0207694_10092869
220 Ga0207704_10372869
221 Ga0207667_10018086
222 Ga0207668_10012988
223 Ga0207677_10024322
224 Ga0207639_10077643
225 Ga0207678_10000264
226 Ga0207708_10009278
227 Ga0207674_10170309
228 Ga0207675_100018909
229 Ga0207683_10055226
230 Ga0209813_10001272
231 Ga0268266_10019038
232 Ga0265338_10024329
233 Ga0307511_10000590
234 Ga0316177_1018473
235 Ga0316176_1096916
236 Ga0314311_1221431
237 Ga0316180_1102112
238 Ga0265325_10000479
239 Ga0265339_10000438
240 Ga0265331_10000014
241 Ga0265327_10000004
242 Ga0307509_10151733
243 Ga0265313_10000332
244 Ga0265342_10013656
245 Ga0307413_10075387
246 Ga0307413_10095848
247 Ga0307518_10001373
248 Ga0307407_10221009
249 Ga0307409_100192451
250 Ga0307416_100231881
251 Ga0307411_10004770
252 Ga0307507_10017521
253 Ga0373956_0008616
254 Ga0436364_0823558
255 Ga0451789_1237463
256 Ga0451791_0854887
257 Ga0451793_0505848
258 Ga0451797_0741649
259 Ga0451800_1049164
260 Ga0451843_1004797
261 Ga0466969_0030866
262 Ga0466972_0006704
263 Ga0466965_0015592
264 Ga0466965_0016079
265 Ga0466965_0048159
266 Ga0466961_0002808
267 Ga0466961_0114579
268 Ga0466963_0028091
269 Ga0466964_0148492
270 Ga0466968_0013339
271 Ga0466970_0011504
272 Ga0466970_0049844
273 Ga0466960_0005195
274 Ga0466960_0037317
275 Ga0466960_0108862
276 Ga0466967_0040441
277 Ga0466967_0071521
278 Ga0466967_0112414
279 Ga0495600_0079488
280 Ga0496101_0193833
281 Ga0496101_0251146
282 Ga0496102_0096506
283 Ga0496104_0026690
284 Ga0496105_0038016
285 Ga0496108_0083300
286 Ga0496109_0023812
287 Ga0496109_0119636
288 Ga0496110_0099842
289 Ga0496114_0000286
290 Ga0496114_0006849
291 Ga0496114_0010768
292 Ga0496114_0042055
293 Ga0496114_0055502
294 Ga0496115_0319579
295 Ga0496124_0048019
296 Ga0501031_0171788
297 Ga0501033_0105516
298 Ga0501033_0162587
299 Ga0501034_0007061
300 Ga0501034_0042177
301 Ga0501036_0049523
302 Ga0501036_0168169
303 Ga0501036_0220359
304 Ga0501037_0148074
305 Ga0501038_0091877
306 Ga0501039_0134981
307 Ga0501040_0167181
308 Ga0501041_0016617
309 Ga0501041_0101264
310 Ga0501041_0117922
311 Ga0501042_0015142
312 Ga0501042_0200168
313 Ga0501043_0011313
314 Ga0501046_0005772
315 Ga0501046_0034602
316 Ga0501047_0032489
317 Ga0501047_0163607
318 Ga0501048_0274000
319 Ga0501068_0029598
320 Ga0501069_0022621
321 Ga0501069_0133156
322 Ga0501070_0012865
323 Ga0501070_0033529
324 Ga0501070_0179297
325 Ga0501070_0321632
326 Ga0501071_0008364
327 Ga0501072_0351973
328 Ga0501073_0016698
329 Ga0501075_0201077
330 Ga0501076_0054729
331 Ga0501079_0324993
332 Ga0501081_0061850
333 Ga0501081_0086439
334 Ga0501044_0018160
335 Ga0501044_0039437
336 Ga0501045_0054713
337 Ga0501045_0069109
338 nmdc:mga03683_7126_c1
339 nmdc:mga03n38_63597_c1
340 nmdc:mga00v17_118172_c1
341 nmdc:mga0yw44_129580_c1
342 nmdc:mga0yw44_6786_c1
343 nmdc:mga0yw44_85860_c1
344 nmdc:mga06z11_116912_c1
345 nmdc:mga06z11_25805_c1
346 nmdc:mga06z11_33752_c1
347 nmdc:mga04h51_4027_c1
348 nmdc:mga07m45_9579_c1
349 nmdc:mga09592_58737_c1
350 nmdc:mga06r32_4197_c1
351 Ga0500644_0000148
352 Ga0500658_0098100
353 Ga0500559_0011588
354 Ga0500573_0052607
355 Ga0501084_0109040
356 Ga0501082_0068473
357 2559428662
358 2583148905
359 2644093087
360 2644229706
361 2644322698
362 2740168265
363 2753069854
364 2795781356
365 2795793359
366 2855388135
367 2866617218
368 2870727635
369 2899364781
370 2899373785
371 2917741252
372 2956940910
373 3001120598
374 8003316423
375 8047719895
376 8054614336

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

74

318

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lmd-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum atcc 13032 0.947 12 339
3q2q-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with calcium and isoprenyl diphosphate 0.9455 16 337
3q2q-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with calcium and isoprenyl diphosphate 0.931 16 337
3lmd-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum atcc 13032 0.9182 12 339
4jyx-assembly1.cif.gz_G-2 crystal structure of polyprenyl synthase patl_3739 (target efi-509195) from pseudoalteromonas atlantica, complex with inorganic phosphate and an unknown ligand 0.8933 21 337
ID Description Score Start End Superfamily
3q2qA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9455 16 337 1.10.600.10
af_O05572_6_323_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9314 16 336 1.10.600.10
3q2qA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.931 16 337 1.10.600.10
af_O05572_6_323_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9258 16 336 1.10.600.10
af_P0AD57_1_323_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9033 21 337 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A7K0NZE1-F1-model_v4 Polyprenyl synthetase family protein 0.9702 148 339 GO:0004659
GO:0008299
AF-A0A7K0XMT2-F1-model_v4 Polyprenyl synthetase family protein 0.9701 135 339 GO:0004659
GO:0008299
AF-A0A7K0NZE1-F1-model_v4 Polyprenyl synthetase family protein 0.9653 148 339 GO:0004659
GO:0008299
AF-A0A7K0XMT2-F1-model_v4 Polyprenyl synthetase family protein 0.9609 135 339 GO:0004659
GO:0008299
AF-A0A7G1IN91-F1-model_v4 Polyprenyl synthetase family protein 0.956 164 336 GO:0004659
GO:0008299

Map