F288467

General Info

Members Datasets Scaffolds Average Seq Length
187 149 117 281

Family's Representative Sequence

Representative Sequence 3300053139|Ga0500568_0000035|Ga0500568_0000035_74329_75330
Length 333
Sequence MASIAKDLSAFLDGSTTALVEVASAKGSTPREKGAWMLVSKTAILGTIGGGQLEYMAIDKARMMLREALPSPLWGGSASNRNEVKIARRGGGENAVAPPPRLERLAAQDLLVDPPHRGEGEVMLSIPLGPEIGQCCGGRVEVSIRRVDEALKADLLATVEAEEARLPHVYVFGGGHVGQALASAFSLLPLRTIVVESRAEALEGMPANIETKLTPMPEECVRMAPAGAAFVVLTHDHALDFLIVAEALGREDAAYVGMIGSKTKKATFRNWYLKTAGGTNASFARLVSPIGGDAVKDKRPAVIAALAAAEIMTVLANATADTGAIAGASLQNT

Samples

Sample ID Description Type Environment
1 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
2 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
3 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
4 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
5 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
6 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
7 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
8 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
9 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
10 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
11 2643221568 Rhizobium sp. Root564 Isolate Unclassified
12 2643221582 Rhizobium sp. Root651 Isolate Unclassified
13 2643221623 Aminobacter sp. DSM 101952 Root100 Isolate Unclassified
14 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
15 2643221688 Rhizobium sp. Root482 Isolate Unclassified
16 2643221693 Rhizobium sp. Root491 Isolate Unclassified
17 2643221718 Rhizobium sp. Root268 Isolate Unclassified
18 2738543024 Aminobacter sp. AP02 Isolate Unclassified
19 2765235802 Phyllobacterium bourgognense 31-25a Isolate Rhizoplane
20 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
21 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
22 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
23 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
24 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
25 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
26 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
27 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
28 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
29 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
30 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
31 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
32 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
33 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
34 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
35 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
36 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
37 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
38 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
39 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
40 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
41 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
42 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
43 2904578770 Phyllobacterium sp. 586 Isolate Unclassified
44 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
45 2919119836 Phyllobacterium sp. 1468 Isolate Rhizosphere
46 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
47 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
48 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
49 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
50 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
51 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
52 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
53 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
54 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
55 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
56 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
57 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
58 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
59 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
60 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
61 2984587000 Agrobacterium larrymoorei SORGH_AS974 Isolate Aerial Root
62 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
63 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
64 2996336353 Mesorhizobium sp. YM1C-6-2 Isolate Unclassified
65 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
66 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
67 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
68 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
69 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
70 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
71 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
72 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
73 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
74 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
75 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
76 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
77 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
78 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
79 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
80 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
81 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
82 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
83 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
84 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
86 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
87 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
90 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
92 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
93 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
95 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
96 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
97 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
100 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
101 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
102 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
103 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
104 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
105 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
106 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
107 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
108 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
109 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
110 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
111 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
112 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
113 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
114 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
115 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
116 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
126 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
128 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
129 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
130 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
131 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
132 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
133 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
134 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
135 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
136 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
137 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
138 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
139 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
140 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
141 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
142 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
143 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
144 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
145 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
146 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
147 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
148 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
149 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 62.57
Metatranscriptomes 0
Isolates 37.43

Biome Distribution

Category Percentage (%)
Aerial Root 2.67
Bulb 0
Endosphere 19.25
Nodule 12.3
Rhizoplane 4.81
Rhizosphere 30.48
Stem 0
Stem Tuber 0
Unclassified 30.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10005725 3300003203 Bacteria 5744
2 rootH1_10138871 3300003323 Bacteria 1334
3 Ga0055536_1013200 3300003781 Bacteria 3001
4 Ga0055530_10027239 3300003791 Bacteria 1564
5 Ga0058692_1003707 3300003856 Bacteria 4662
6 Ga0070659_100397065 3300005366 Bacteria 1164
7 Ga0070665_100020900 3300005548 Bacteria 6578
8 Ga0070665_100068782 3300005548 Bacteria 3550
9 Ga0081540_1027090 3300005983 Bacteria 3255
10 Ga0081539_10002345 3300005985 Bacteria 27226
11 Ga0075365_10122872 3300006038 Bacteria 1792
12 Ga0075368_10000333 3300006042 Bacteria 13821
13 Ga0075364_10000029 3300006051 Bacteria 50718
14 Ga0075370_10025340 3300006353 Bacteria 3280
15 Ga0099826_10016480 3300006948 Bacteria 5581
16 Ga0105243_10083758 3300009148 Bacteria 2610
17 Ga0157373_10003567 3300013100 Bacteria 11757
18 Ga0157373_10056968 3300013100 Bacteria 2773
19 Ga0157371_10000017 3300013102 Bacteria 320830
20 Ga0157370_10001031 3300013104 Bacteria 35059
21 Ga0209676_1007672 3300025292 Bacteria 4998
22 Ga0209025_1000154 3300025294 Bacteria 170288
23 Ga0209025_1000377 3300025294 Bacteria 92728
24 Ga0209758_1000058 3300025297 Bacteria 331603
25 Ga0209050_1019932 3300025298 Bacteria 2522
26 Ga0209051_1003073 3300025303 Bacteria 11272
27 Ga0209257_1011549 3300025304 Bacteria 4235
28 Ga0209257_1011598 3300025304 Bacteria 4218
29 Ga0209371_1000022 3300027312 Bacteria 536342
30 Ga0209371_1002629 3300027312 Bacteria 9830
31 Ga0209371_1019838 3300027312 Bacteria 1668
32 Ga0209282_1000985 3300027666 Bacteria 14881
33 Ga0209282_1029727 3300027666 Bacteria 3369
34 Ga0209813_10000256 3300027866 Bacteria 15489
35 Ga0268266_10015989 3300028379 Bacteria 6417
36 Ga0268266_10018201 3300028379 Bacteria 5990
37 Ga0268256_1000019 3300030500 Bacteria 587949
38 Ga0268256_1004184 3300030500 Bacteria 6098
39 Ga0268256_1012785 3300030500 Bacteria 2577
40 Ga0268256_1022221 3300030500 Bacteria 1668
41 Ga0395899_0000030 3300037312 Bacteria 329063
42 Ga0395900_0000023 3300037418 Bacteria 336048
43 Ga0395898_0000038 3300037466 Bacteria 329063
44 Ga0395905_0000021 3300037471 Bacteria 329054
45 Ga0395901_0000018 3300038443 Bacteria 336048
46 Ga0495661_0130885 3300046665 Bacteria 1375
47 Ga0495588_0042556 3300046674 Bacteria 2322
48 Ga0495681_0019716 3300047470 Bacteria 3673
49 Ga0496104_0057688 3300048907 Bacteria 3674
50 Ga0496111_0001574 3300048914 Bacteria 13180
51 Ga0496116_0000105 3300048919 Bacteria 192704
52 Ga0496116_0074448 3300048919 Bacteria 2136
53 Ga0496117_0000002 3300048920 Bacteria 2483758
54 Ga0496117_0072803 3300048920 Bacteria 2295
55 Ga0496118_0000566 3300048921 Bacteria 61208
56 Ga0496118_0039928 3300048921 Bacteria 3739
57 Ga0496118_0175379 3300048921 Bacteria 1303
58 Ga0496119_0020329 3300048922 Bacteria 4847
59 Ga0496119_0025176 3300048922 Bacteria 4162
60 Ga0496119_0222896 3300048922 Bacteria 964
61 Ga0496120_0000309 3300048923 Bacteria 81375
62 Ga0496120_0007270 3300048923 Bacteria 8275
63 Ga0496121_0000003 3300048924 Bacteria 1191431
64 Ga0496121_0224231 3300048924 Bacteria 1321
65 Ga0496122_0000004 3300048925 Bacteria 645283
66 Ga0496122_0012278 3300048925 Bacteria 8560
67 Ga0496122_0050934 3300048925 Bacteria 3152
68 Ga0496122_0080119 3300048925 Bacteria 2278
69 Ga0496123_0000007 3300048926 Bacteria 645283
70 Ga0496123_0021077 3300048926 Bacteria 5077
71 Ga0496123_0070083 3300048926 Bacteria 2196
72 Ga0496124_0000067 3300048927 Bacteria 222576
73 Ga0496124_0159054 3300048927 Bacteria 1763
74 Ga0496124_0204158 3300048927 Bacteria 1500
75 Ga0496125_0001144 3300048928 Bacteria 40287
76 Ga0496126_0000188 3300048929 Bacteria 139625
77 Ga0496126_0478095 3300048929 Bacteria 998
78 Ga0496126_0478096 3300048929 Bacteria 998
79 Ga0501032_0000324 3300049569 Bacteria 39970
80 Ga0501033_0000579 3300049570 Bacteria 34006
81 Ga0501034_0000153 3300049571 Bacteria 129892
82 Ga0501034_0044029 3300049571 Bacteria 4515
83 Ga0501034_0131141 3300049571 Bacteria 2489
84 Ga0501036_0002672 3300049572 Bacteria 14066
85 Ga0501037_0000442 3300049573 Bacteria 34062
86 Ga0501038_0000033 3300049574 Bacteria 129840
87 Ga0501039_0000031 3300049575 Bacteria 129814
88 Ga0501043_0000044 3300049579 Bacteria 114304
89 Ga0501047_0305198 3300049581 Bacteria 1433
90 Ga0501070_0046921 3300049586 Bacteria 3593
91 Ga0501035_0000467 3300049822 Bacteria 45324
92 Ga0501035_0003190 3300049822 Bacteria 15719
93 Ga0501035_0199374 3300049822 Bacteria 1717
94 Ga0501044_0013331 3300049823 Bacteria 8896
95 Ga0501044_0031884 3300049823 Bacteria 5543
96 Ga0501044_0410122 3300049823 Bacteria 1266
97 nmdc:mga03683_70273_c1 3300050489 Bacteria 1496
98 nmdc:mga00v17_7_c1 3300050491 Bacteria 167228
99 nmdc:mga0yw44_443_c1 3300050492 Bacteria 14576
100 nmdc:mga0yw44_7881_c1 3300050492 Bacteria 5275
101 nmdc:mga0k408_37367_c1 3300050493 Bacteria 2788
102 nmdc:mga06z11_1353_c1 3300050494 Bacteria 9076
103 nmdc:mga04h51_1198_c1 3300050495 Bacteria 5986
104 nmdc:mga0sz30_7169_c1 3300050516 Bacteria 4173
105 Ga0500560_002103 3300053107 Bacteria 3713
106 Ga0500560_069102 3300053107 Bacteria 1162
107 Ga0500572_004904 3300053111 Bacteria 3028
108 Ga0500618_000304 3300053125 Bacteria 36803
109 Ga0500561_0012384 3300053137 Bacteria 1818
110 Ga0500568_0000035 3300053139 Bacteria 137912
111 Ga0500616_0000363 3300053153 Bacteria 64277
112 Ga0500624_000776 3300053157 Bacteria 7557
113 Ga0500627_0154412 3300053158 Bacteria 1036
114 Ga0500634_0007859 3300053161 Bacteria 5294
115 Ga0500634_0070679 3300053161 Bacteria 1827
116 Ga0500636_0000003 3300053177 Bacteria 240189
117 Ga0500636_0003117 3300053177 Bacteria 9292

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050489 nmdc:mga03683_70273_c1 nmdc:mga03683_70273_c1_712_1461 238
2 3300049571 Ga0501034_0044029 Ga0501034_0044029_101_859 252
3 iso_pu_bacteria 2558860983 2561469243 259
4 3300048914 Ga0496111_0001574 Ga0496111_0001574_8154_9002 260
5 3300048927 Ga0496124_0204158 Ga0496124_0204158_53_901 260
6 3300049822 Ga0501035_0199374 Ga0501035_0199374_877_1665 262
7 3300005366 Ga0070659_100397065 Ga0070659_1003970651 265
8 iso_pu_bacteria 2643221568 2643856548 266
9 iso_pu_bacteria 2919166419 2919169529 266
10 iso_pu_bacteria 2978969890 2978971930 266
11 iso_pu_bacteria 2984587000 2984590215 266
12 iso_pu_bacteria 2996310559 2996311810 266
13 iso_pu_bacteria 8018150411 8018151296 266
14 3300049571 Ga0501034_0131141 Ga0501034_0131141_852_1655 267
15 iso_pu_bacteria 2537561587 2537877187 267
16 iso_pu_bacteria 2554235003 2554248429 267
17 iso_pu_bacteria 2558860242 2559295545 267
18 iso_pu_bacteria 2643221623 2644133379 267
19 iso_pu_bacteria 2643221693 2644521760 267
20 iso_pu_bacteria 2808606387 2808987721 267
21 iso_pu_bacteria 2899845264 2899848806 267
22 iso_pu_bacteria 2919114240 2919114484 267
23 iso_pu_bacteria 2926760298 2926762630 267
24 iso_pu_bacteria 2979089926 2979092057 267
25 iso_pu_bacteria 2979095461 2979100554 267
26 iso_pu_bacteria 650716007 650740755 267
27 iso_pu_bacteria 8002285264 8002287093 267
28 3300006038 Ga0075365_10122872 Ga0075365_101228722 268
29 3300049569 Ga0501032_0000324 Ga0501032_0000324_22463_23269 268
30 3300049570 Ga0501033_0000579 Ga0501033_0000579_10738_11544 268
31 3300049571 Ga0501034_0000153 Ga0501034_0000153_22513_23319 268
32 3300049572 Ga0501036_0002672 Ga0501036_0002672_10754_11560 268
33 3300049573 Ga0501037_0000442 Ga0501037_0000442_10794_11600 268
34 3300049574 Ga0501038_0000033 Ga0501038_0000033_106574_107380 268
35 3300049575 Ga0501039_0000031 Ga0501039_0000031_22463_23269 268
36 3300049579 Ga0501043_0000044 Ga0501043_0000044_6925_7731 268
37 3300049581 Ga0501047_0305198 Ga0501047_0305198_520_1326 268
38 3300049822 Ga0501035_0000467 Ga0501035_0000467_22461_23267 268
39 3300049823 Ga0501044_0013331 Ga0501044_0013331_822_1628 268
40 3300053158 Ga0500627_0154412 Ga0500627_0154412_34_840 268
41 iso_pu_bacteria 2585427633 2585996743 268
42 iso_pu_bacteria 2585427634 2586001268 268
43 iso_pu_bacteria 2599185236 2599721687 268
44 iso_pu_bacteria 2738543024 2739309515 268
45 iso_pu_bacteria 2919171160 2919173038 268
46 iso_pu_bacteria 2599185210 2599601865 269
47 iso_pu_bacteria 2600255279 2601609880 269
48 iso_pu_bacteria 2600255308 2601746655 269
49 iso_pu_bacteria 2838675328 2838675566 269
50 iso_pu_bacteria 2838714209 2838714448 269
51 iso_pu_bacteria 2838719591 2838721751 269
52 iso_pu_bacteria 2838724970 2838725208 269
53 iso_pu_bacteria 2841846520 2841848735 269
54 iso_pu_bacteria 2841859092 2841862335 269
55 iso_pu_bacteria 2842124991 2842125234 269
56 iso_pu_bacteria 2842130223 2842130461 269
57 iso_pu_bacteria 2842152218 2842154369 269
58 iso_pu_bacteria 2842170452 2842170690 269
59 iso_pu_bacteria 2842175837 2842177989 269
60 iso_pu_bacteria 2842187318 2842187557 269
61 iso_pu_bacteria 2842211629 2842211868 269
62 iso_pu_bacteria 2842224351 2842226513 269
63 iso_pu_bacteria 2842515876 2842519119 269
64 iso_pu_bacteria 2899792073 2899794063 269
65 iso_pu_bacteria 2926754445 2926755499 269
66 iso_pu_bacteria 2933006813 2933009013 269
67 iso_pu_bacteria 2933011516 2933014708 269
68 iso_pu_bacteria 2933594066 2933596391 269
69 iso_pu_bacteria 2979100975 2979104117 269
70 iso_pu_bacteria 2984509177 2984511313 269
71 iso_pu_bacteria 2984518228 2984522326 269
72 iso_pu_bacteria 2984537506 2984541628 269
73 iso_pu_bacteria 2984601300 2984603901 269
74 iso_pu_bacteria 8003570095 8003571831 269
75 iso_pu_bacteria 8054460903 8054463179 269
76 3300003323 rootH1_10138871 rootH1_101388712 270
77 3300005548 Ga0070665_100068782 Ga0070665_1000687824 270
78 3300028379 Ga0268266_10018201 Ga0268266_100182014 270
79 3300048919 Ga0496116_0000105 Ga0496116_0000105_142225_143049 270
80 3300048922 Ga0496119_0222896 Ga0496119_0222896_47_877 270
81 3300048927 Ga0496124_0159054 Ga0496124_0159054_471_1301 270
82 3300048929 Ga0496126_0000188 Ga0496126_0000188_88832_89662 270
83 3300049586 Ga0501070_0046921 Ga0501070_0046921_1182_2015 270
84 3300049822 Ga0501035_0003190 Ga0501035_0003190_10390_11223 270
85 3300049823 Ga0501044_0031884 Ga0501044_0031884_1177_2010 270
86 3300053125 Ga0500618_000304 Ga0500618_000304_27628_28470 270
87 iso_pu_bacteria 2929138655 2929141062 270
88 iso_pu_bacteria 3002141150 3002146314 270
89 3300005548 Ga0070665_100020900 Ga0070665_1000209003 271
90 3300006042 Ga0075368_10000333 Ga0075368_100003335 271
91 3300006353 Ga0075370_10025340 Ga0075370_100253402 271
92 3300009148 Ga0105243_10083758 Ga0105243_100837582 271
93 3300013100 Ga0157373_10003567 Ga0157373_1000356712 271
94 3300013100 Ga0157373_10056968 Ga0157373_100569684 271
95 3300013102 Ga0157371_10000017 Ga0157371_10000017262 271
96 3300013104 Ga0157370_10001031 Ga0157370_100010316 271
97 3300027866 Ga0209813_10000256 Ga0209813_100002565 271
98 3300028379 Ga0268266_10015989 Ga0268266_100159893 271
99 3300048920 Ga0496117_0000002 Ga0496117_0000002_255536_256384 271
100 3300048921 Ga0496118_0000566 Ga0496118_0000566_12919_13767 271
101 3300048922 Ga0496119_0025176 Ga0496119_0025176_75_923 271
102 3300048923 Ga0496120_0000309 Ga0496120_0000309_35088_35936 271
103 3300048925 Ga0496122_0000004 Ga0496122_0000004_389292_390140 271
104 3300048925 Ga0496122_0012278 Ga0496122_0012278_6350_7201 271
105 3300048926 Ga0496123_0000007 Ga0496123_0000007_389292_390140 271
106 3300048929 Ga0496126_0478095 Ga0496126_0478095_130_978 271
107 3300048929 Ga0496126_0478096 Ga0496126_0478096_21_869 271
108 3300050491 nmdc:mga00v17_7_c1 nmdc:mga00v17_7_c1_15274_16122 271
109 3300050492 nmdc:mga0yw44_443_c1 nmdc:mga0yw44_443_c1_3020_3868 271
110 3300050493 nmdc:mga0k408_37367_c1 nmdc:mga0k408_37367_c1_129_977 271
111 3300050494 nmdc:mga06z11_1353_c1 nmdc:mga06z11_1353_c1_3402_4250 271
112 3300050495 nmdc:mga04h51_1198_c1 nmdc:mga04h51_1198_c1_3982_4830 271
113 3300050516 nmdc:mga0sz30_7169_c1 nmdc:mga0sz30_7169_c1_864_1712 271
114 3300053137 Ga0500561_0012384 Ga0500561_0012384_348_1196 271
115 iso_pu_bacteria 2643221637 2644209763 271
116 iso_pu_bacteria 2643221688 2644495042 271
117 iso_pu_bacteria 2643221718 2644653313 271
118 iso_pu_bacteria 2765235802 2765468243 271
119 iso_pu_bacteria 2767802442 2770196336 271
120 iso_pu_bacteria 2775506902 2776268525 271
121 iso_pu_bacteria 2775506904 2776285394 271
122 iso_pu_bacteria 2840764183 2840770625 271
123 iso_pu_bacteria 2904578770 2904581957 271
124 iso_pu_bacteria 2919119836 2919123625 271
125 3300003781 Ga0055536_1013200 Ga0055536_10132001 272
126 3300003791 Ga0055530_10027239 Ga0055530_100272392 272
127 3300006051 Ga0075364_10000029 Ga0075364_1000002932 272
128 3300025292 Ga0209676_1007672 Ga0209676_10076724 272
129 3300025297 Ga0209758_1000058 Ga0209758_1000058128 272
130 3300025298 Ga0209050_1019932 Ga0209050_10199321 272
131 3300025303 Ga0209051_1003073 Ga0209051_10030733 272
132 3300025304 Ga0209257_1011549 Ga0209257_10115493 272
133 3300025304 Ga0209257_1011598 Ga0209257_10115983 272
134 3300048925 Ga0496122_0050934 Ga0496122_0050934_796_1644 272
135 3300048926 Ga0496123_0021077 Ga0496123_0021077_2707_3555 272
136 3300048927 Ga0496124_0000067 Ga0496124_0000067_154815_155669 272
137 3300053153 Ga0500616_0000363 Ga0500616_0000363_185_1018 272
138 3300053161 Ga0500634_0007859 Ga0500634_0007859_2887_3735 272
139 3300003856 Ga0058692_1003707 Ga0058692_10037074 273
140 3300006948 Ga0099826_10016480 Ga0099826_100164806 273
141 3300025294 Ga0209025_1000154 Ga0209025_1000154104 273
142 3300027312 Ga0209371_1000022 Ga0209371_1000022289 273
143 3300027312 Ga0209371_1002629 Ga0209371_10026293 273
144 3300027312 Ga0209371_1019838 Ga0209371_10198382 273
145 3300027666 Ga0209282_1000985 Ga0209282_100098518 273
146 3300027666 Ga0209282_1029727 Ga0209282_10297273 273
147 3300030500 Ga0268256_1000019 Ga0268256_1000019231 273
148 3300030500 Ga0268256_1004184 Ga0268256_10041845 273
149 3300030500 Ga0268256_1012785 Ga0268256_10127851 273
150 3300030500 Ga0268256_1022221 Ga0268256_10222212 273
151 3300046665 Ga0495661_0130885 Ga0495661_0130885_517_1353 273
152 3300046674 Ga0495588_0042556 Ga0495588_0042556_51_905 273
153 3300047470 Ga0495681_0019716 Ga0495681_0019716_142_996 273
154 3300048907 Ga0496104_0057688 Ga0496104_0057688_18_872 273
155 3300048919 Ga0496116_0074448 Ga0496116_0074448_655_1509 273
156 3300048920 Ga0496117_0072803 Ga0496117_0072803_715_1569 273
157 3300048921 Ga0496118_0039928 Ga0496118_0039928_2523_3377 273
158 3300053107 Ga0500560_002103 Ga0500560_002103_2818_3654 273
159 3300053107 Ga0500560_069102 Ga0500560_069102_118_972 273
160 3300053111 Ga0500572_004904 Ga0500572_004904_86_943 273
161 3300053157 Ga0500624_000776 Ga0500624_000776_6108_6944 273
162 3300053161 Ga0500634_0070679 Ga0500634_0070679_932_1768 273
163 3300053177 Ga0500636_0000003 Ga0500636_0000003_32234_33091 273
164 3300053177 Ga0500636_0003117 Ga0500636_0003117_8045_8902 273
165 iso_pu_bacteria 2818991439 2819559262 273
166 iso_pu_bacteria 2996336353 2996338520 273
167 3300048921 Ga0496118_0175379 Ga0496118_0175379_94_939 274
168 3300048922 Ga0496119_0020329 Ga0496119_0020329_1430_2275 274
169 3300048923 Ga0496120_0007270 Ga0496120_0007270_1809_2654 274
170 3300048924 Ga0496121_0000003 Ga0496121_0000003_606879_607724 274
171 3300048924 Ga0496121_0224231 Ga0496121_0224231_217_1062 274
172 3300048925 Ga0496122_0080119 Ga0496122_0080119_1323_2168 274
173 3300048926 Ga0496123_0070083 Ga0496123_0070083_57_902 274
174 3300048928 Ga0496125_0001144 Ga0496125_0001144_25180_26025 274
175 3300050492 nmdc:mga0yw44_7881_c1 nmdc:mga0yw44_7881_c1_1451_2323 274
176 3300025294 Ga0209025_1000377 Ga0209025_100037783 275
177 3300053139 Ga0500568_0000035 Ga0500568_0000035_74329_75330 275
178 iso_pu_bacteria 2643221582 2643920137 275
179 3300049823 Ga0501044_0410122 Ga0501044_0410122_115_1110 276
180 3300003203 JGI25406J46586_10005725 JGI25406J46586_100057252 277
181 3300005983 Ga0081540_1027090 Ga0081540_10270904 277
182 3300005985 Ga0081539_10002345 Ga0081539_100023459 277
183 3300037312 Ga0395899_0000030 Ga0395899_0000030_129606_130532 277
184 3300037418 Ga0395900_0000023 Ga0395900_0000023_136012_136938 277
185 3300037466 Ga0395898_0000038 Ga0395898_0000038_129606_130532 277
186 3300037471 Ga0395905_0000021 Ga0395905_0000021_129606_130532 277
187 3300038443 Ga0395901_0000018 Ga0395901_0000018_136012_136938 277

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02625

XdhC_CoxI

XdhC and CoxI family

11

72

0.94

PF13478

XdhC_C

XdhC Rossmann domain

169

311

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5x68-assembly1.cif.gz_A crystal structure of human kmo 0.9372 119 150
6lkd-assembly1.cif.gz_A in meso full-length rat kmo in complex with a pyrazoyl benzoic acid inhibitor 0.9212 119 150
5xgv-assembly1.cif.gz_B-2 the structure of diels-alderase pyre3 in the biosynthetic pathway of pyrroindomycins 0.9201 120 151
5x6r-assembly2.cif.gz_B crystal structure of saccharomyces cerevisiae kmo in complex with ro 61-8048 0.9197 120 152
7exs-assembly1.cif.gz_A thermomicrobium roseum sarcosine oxidase mutant - s320r 0.9122 120 151
ID Description Score Start End Superfamily
af_A0A1D6EF22_2_176_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9246 118 151 3.50.50.60
5xgvB01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9201 120 151 3.50.50.60
3nksA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9193 119 149 3.50.50.60
af_A4HWA7_1_176_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9164 118 149 3.50.50.60
af_P9WNY9_4_366_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9156 121 151 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A659YGS9-F1-model_v4 deleted 1.002 122 208
AF-A0A440AVF4-F1-model_v4 Xanthine dehydrogenase accessory protein XdhC 0.9998 118 274
AF-A0A527DAN1-F1-model_v4 Xanthine dehydrogenase accessory protein XdhC 0.9949 99 276
AF-A0A435G8R2-F1-model_v4 Xanthine dehydrogenase accessory protein XdhC 0.9936 139 276
AF-A0A435F0S4-F1-model_v4 deleted 0.9913 185 276

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pLDDT pTM Quality
91.58 0.84 High
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Predicted Structure (AlphaFold2)

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