F288079

General Info

Members Datasets Scaffolds Average Seq Length
187 134 374 280

Family's Representative Sequence

Representative Sequence 3300042007|Ga0439449_0075795|Ga0439449_0075795_222_1223
Length 333
Sequence MPLVAPGMKMVFPLIRMLRVFGHRERRGRERLSGERESLDAPARRAHDGSMDREALAEFLRSRREGLQPADVGLTAGVRRRAPGLRREEVAQLALMSTDYYTRLEQQRGPQPSTQMLASLARALRLTADERDYLYRMAGHAVPDRLGSAGHVAPPLQRVFDRLSDTPALVISALGETLVQNALAVALLGDHVGATGWDRYEPWRWFVHPESERAHYPENDHPRHSRALVAGLRAAYGTLGPSSQAGELVAELLRRSPEFGDLWERQEVAQRFADHKVLIHPEVGEIEIDCQVLFTEDRSQALLVLTPEPRSEAEEKIRLLGVLGVQQFSDSGR

Samples

Sample ID Description Type Environment
1 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
4 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
23 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
24 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
28 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
29 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
30 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
31 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
32 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
33 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
34 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
35 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
51 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
52 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
53 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
54 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
55 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
62 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
63 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
64 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
65 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
66 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
67 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
68 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
69 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
70 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
71 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
72 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
73 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
74 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
75 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
76 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
77 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
78 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
79 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
80 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
81 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
82 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
83 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
84 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
85 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
86 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
87 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
88 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
89 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
90 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
91 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
92 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
93 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
94 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
95 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
98 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
99 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
100 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
101 2643221553 Microbacterium sp. Root553 Isolate Unclassified
102 2643221616 Leifsonia sp. Root227 Isolate Unclassified
103 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
104 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
105 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
106 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
107 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
108 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
109 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
110 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
111 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
112 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
113 2808606394 Promicromonospora sp. C35 Isolate Unclassified
114 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
115 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
116 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
117 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
118 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
119 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
120 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
121 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
122 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
123 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
124 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
125 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
126 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
127 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
128 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
129 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
130 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
131 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
132 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
133 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
134 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.28
Metatranscriptomes 0
Isolates 18.72

Biome Distribution

Category Percentage (%)
Aerial Root 2.14
Bulb 0
Endosphere 8.02
Nodule 0
Rhizoplane 13.37
Rhizosphere 41.18
Stem 0
Stem Tuber 1.07
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439449_0075795 3300042007 Bacteria 1240
2 JGI25162J39368_1011445 3300002737 Bacteria 1066
3 JGI25164J39214_1000509 3300002772 Bacteria 18709
4 JGI25165J46597_1000142 3300003214 Bacteria 119146
5 rootH2_10081132 3300003320 Bacteria 9156
6 Ga0055540_1003259 3300003792 Bacteria 7945
7 Ga0070668_100000135 3300005347 Bacteria 46315
8 Ga0070668_100114134 3300005347 Bacteria 2152
9 Ga0070668_100234134 3300005347 Bacteria 1519
10 Ga0070669_100002789 3300005353 Bacteria 12606
11 Ga0070669_100089562 3300005353 Bacteria 2305
12 Ga0070667_100000617 3300005367 Bacteria 34686
13 Ga0070700_100006584 3300005441 Bacteria 6219
14 Ga0070665_100463474 3300005548 Bacteria 1277
15 Ga0070664_100192729 3300005564 Bacteria 1816
16 Ga0068859_100018689 3300005617 Bacteria 6964
17 Ga0068861_100077557 3300005719 Bacteria 2592
18 Ga0068863_100000626 3300005841 Bacteria 35805
19 Ga0068858_100029535 3300005842 Bacteria 5091
20 Ga0068860_100000430 3300005843 Bacteria 53320
21 Ga0068862_100000490 3300005844 Bacteria 42284
22 Ga0075365_10003348 3300006038 Bacteria 8242
23 Ga0075364_10015207 3300006051 Bacteria 4768
24 Ga0097620_100018688 3300006931 Bacteria 6964
25 Ga0105247_10000040 3300009101 Bacteria 158975
26 Ga0105248_10000357 3300009177 Bacteria 53446
27 Ga0105237_10025204 3300009545 Bacteria 6083
28 Ga0105237_10029344 3300009545 Bacteria 5593
29 Ga0105249_10000069 3300009553 Bacteria 148118
30 Ga0105239_10035832 3300010375 Bacteria 5448
31 Ga0105246_10056239 3300011119 Bacteria 2719
32 Ga0163162_10025385 3300013306 Bacteria 5854
33 Ga0157372_10059739 3300013307 Bacteria 4265
34 Ga0157380_10554903 3300014326 Bacteria 1128
35 Ga0157379_10022539 3300014968 Bacteria 5578
36 Ga0207427_100154 3300025231 Bacteria 78297
37 Ga0209437_100386 3300025233 Bacteria 43276
38 Ga0209233_1000001 3300025261 Bacteria 2992747
39 Ga0209455_1002598 3300025272 Bacteria 6871
40 Ga0207710_10000050 3300025900 Bacteria 186453
41 Ga0207671_10007371 3300025914 Bacteria 9552
42 Ga0207671_10041642 3300025914 Bacteria 3399
43 Ga0207681_10073966 3300025923 Bacteria 2386
44 Ga0207690_10024142 3300025932 Bacteria 3804
45 Ga0207711_10000294 3300025941 Bacteria 53364
46 Ga0207651_10557580 3300025960 Bacteria 997
47 Ga0207712_10000084 3300025961 Bacteria 107789
48 Ga0207668_10000867 3300025972 Bacteria 18255
49 Ga0207668_10039341 3300025972 Bacteria 3182
50 Ga0207668_10214317 3300025972 Bacteria 1542
51 Ga0207658_10000276 3300025986 Bacteria 53829
52 Ga0207703_10067402 3300026035 Bacteria 2945
53 Ga0207641_10001121 3300026088 Bacteria 26928
54 Ga0268266_10140955 3300028379 Bacteria 2163
55 Ga0268265_10000473 3300028380 Bacteria 42300
56 Ga0268264_10000473 3300028381 Bacteria 54429
57 Ga0265340_10001246 3300031247 Bacteria 14609
58 Ga0307516_10096376 3300031730 Bacteria 2779
59 Ga0307413_10473145 3300031824 Bacteria 1000
60 Ga0307410_10049483 3300031852 Bacteria 2822
61 Ga0307406_10047810 3300031901 Bacteria 2698
62 Ga0307406_10365061 3300031901 Bacteria 1133
63 Ga0307409_100233159 3300031995 Bacteria 1670
64 Ga0307416_100093175 3300032002 Bacteria 2594
65 Ga0307415_100106349 3300032126 Bacteria 2071
66 Ga0395900_0587854 3300037418 Bacteria 1055
67 Ga0395898_0028021 3300037466 Bacteria 5648
68 Ga0395901_0028320 3300038443 Bacteria 5761
69 Ga0451797_1133571 3300041453 Bacteria 974
70 Ga0451839_0576006 3300041496 Bacteria 1089
71 Ga0451841_1369606 3300041498 Bacteria 1853
72 Ga0466965_0000010 3300044683 Bacteria 112032
73 Ga0466965_0174770 3300044683 Bacteria 1131
74 Ga0466970_0033805 3300044765 Bacteria 2704
75 Ga0466970_0102034 3300044765 Bacteria 1563
76 Ga0466960_0009377 3300044901 Bacteria 4032
77 Ga0495654_0176159 3300046530 Bacteria 929
78 Ga0495624_0028219 3300046690 Bacteria 3670
79 Ga0495626_0045736 3300048091 Bacteria 2042
80 Ga0496100_0001341 3300048903 Bacteria 12045
81 Ga0496100_0023854 3300048903 Bacteria 3723
82 Ga0496100_0142917 3300048903 Bacteria 1698
83 Ga0496101_0001123 3300048904 Bacteria 15962
84 Ga0496101_0018680 3300048904 Bacteria 4717
85 Ga0496101_0120321 3300048904 Bacteria 1984
86 Ga0496102_0000016 3300048905 Bacteria 286787
87 Ga0496102_0002172 3300048905 Bacteria 16844
88 Ga0496102_0078286 3300048905 Bacteria 3043
89 Ga0496102_0681737 3300048905 Bacteria 951
90 Ga0496103_0000015 3300048906 Bacteria 287966
91 Ga0496103_0002450 3300048906 Bacteria 11671
92 Ga0496103_0005508 3300048906 Bacteria 7572
93 Ga0496104_0059746 3300048907 Bacteria 3609
94 Ga0496105_0101207 3300048908 Bacteria 2379
95 Ga0496107_0243054 3300048910 Bacteria 1339
96 Ga0496109_0006165 3300048912 Bacteria 10077
97 Ga0496109_0233797 3300048912 Bacteria 1730
98 Ga0496110_0178744 3300048913 Bacteria 1926
99 Ga0496111_0049831 3300048914 Bacteria 3019
100 Ga0496112_0068834 3300048915 Bacteria 3496
101 Ga0496113_0028686 3300048916 Bacteria 4006
102 Ga0496114_0086443 3300048917 Bacteria 2657
103 Ga0496115_0013933 3300048918 Bacteria 6083
104 Ga0496116_0000055 3300048919 Bacteria 286923
105 Ga0496116_0028454 3300048919 Bacteria 4048
106 Ga0496116_0094304 3300048919 Bacteria 1809
107 Ga0496117_0000006 3300048920 Bacteria 758420
108 Ga0496117_0000184 3300048920 Bacteria 127675
109 Ga0496117_0002514 3300048920 Bacteria 22982
110 Ga0496117_0062328 3300048920 Bacteria 2556
111 Ga0496118_0000004 3300048921 Bacteria 758420
112 Ga0496118_0000142 3300048921 Bacteria 126087
113 Ga0496118_0004778 3300048921 Bacteria 15827
114 Ga0496118_0004912 3300048921 Bacteria 15536
115 Ga0496119_0001368 3300048922 Bacteria 29751
116 Ga0496119_0002383 3300048922 Bacteria 20645
117 Ga0496119_0009188 3300048922 Bacteria 8533
118 Ga0496119_0011272 3300048922 Bacteria 7430
119 Ga0496119_0012675 3300048922 Bacteria 6821
120 Ga0496120_0001045 3300048923 Bacteria 36860
121 Ga0496120_0001445 3300048923 Bacteria 28427
122 Ga0496120_0001501 3300048923 Bacteria 27618
123 Ga0496120_0008238 3300048923 Bacteria 7616
124 Ga0496120_0074442 3300048923 Bacteria 1855
125 Ga0496120_0138683 3300048923 Bacteria 1237
126 Ga0496121_0004087 3300048924 Bacteria 20040
127 Ga0496121_0044053 3300048924 Bacteria 3855
128 Ga0496122_0000065 3300048925 Bacteria 235242
129 Ga0496122_0007942 3300048925 Bacteria 11608
130 Ga0496122_0010721 3300048925 Bacteria 9401
131 Ga0496122_0083261 3300048925 Bacteria 2219
132 Ga0496123_0000006 3300048926 Bacteria 647258
133 Ga0496124_0000090 3300048927 Bacteria 192095
134 Ga0496124_0001530 3300048927 Bacteria 33656
135 Ga0496124_0014470 3300048927 Bacteria 7628
136 Ga0496124_0272598 3300048927 Bacteria 1238
137 Ga0496124_0361257 3300048927 Bacteria 1023
138 Ga0496125_0000894 3300048928 Bacteria 47247
139 Ga0496125_0004933 3300048928 Bacteria 15105
140 Ga0496125_0110880 3300048928 Bacteria 1987
141 Ga0496126_0000089 3300048929 Bacteria 211348
142 Ga0496126_0002350 3300048929 Bacteria 25859
143 Ga0496126_0015905 3300048929 Bacteria 7554
144 Ga0496126_0037013 3300048929 Bacteria 4559
145 Ga0496126_0297931 3300048929 Bacteria 1331
146 Ga0501031_0013913 3300049568 Bacteria 5241
147 Ga0501034_0080870 3300049571 Bacteria 3253
148 nmdc:mga03683_204969_c1 3300050489 Bacteria 906
149 nmdc:mga03683_7796_c1 3300050489 Bacteria 3734
150 nmdc:mga0sz30_40787_c1 3300050516 Bacteria 1951
151 Ga0500556_0121631 3300053104 Bacteria 1018
152 Ga0500573_0028797 3300053140 Bacteria 3200
153 2643783500 2643221553 Bacteria 3544260
154 2644095235 2643221616 Bacteria 4066575
155 2644539021 2643221697 Bacteria 3575694
156 2644680280 2643221724 Bacteria 3593515
157 2730229732 2728369380 Bacteria 3620317
158 2738696510 2738541272 Bacteria 6848551
159 2739325649 2738543027 Bacteria 6409078
160 2739605286 2739367654 Bacteria 6049412
161 2747952359 2747842429 Bacteria 3914386
162 2753303113 2751185788 Bacteria 4541048
163 2758226694 2757320536 Bacteria 3629334
164 2760307853 2758568522 Bacteria 5953541
165 2809028515 2808606394 Bacteria 6248540
166 2833711677 2833709550 Bacteria 4008291
167 2839986906 2839986021 Bacteria 3685650
168 2844850504 2844849076 Bacteria 4091819
169 2857721406 2857720070 Bacteria 3189373
170 2857723924 2857723135 Bacteria 4217853
171 2857733667 2857733635 Bacteria 3532004
172 2884764614 2884763398 Bacteria 4091164
173 2899370824 2899370129 Bacteria 6781179
174 2919044393 2919042368 Bacteria 3905917
175 2928093702 2928090899 Bacteria 3158267
176 2928107829 2928104781 Bacteria 3877447
177 2929213285 2929212328 Bacteria 7708288
178 2932431820 2932431166 Bacteria 4215299
179 2945969925 2945968032 Bacteria 4111363
180 2945970610 2945968032 Bacteria 4111363
181 2946035468 2946033335 Bacteria 3835514
182 2977267326 2977264416 Bacteria 3750737
183 2984552263 2984551494 Bacteria 3877562
184 2984578783 2984576629 Bacteria 4248407
185 2984582597 2984580707 Bacteria 3351387
186 2990257965 2990256926 Bacteria 4252839
187 8016256984 8016254467 Bacteria 3797036
188 Ga0439449_0075795
189 JGI25162J39368_1011445
190 JGI25164J39214_1000509
191 JGI25165J46597_1000142
192 rootH2_10081132
193 Ga0055540_1003259
194 Ga0070668_100000135
195 Ga0070668_100114134
196 Ga0070668_100234134
197 Ga0070669_100002789
198 Ga0070669_100089562
199 Ga0070667_100000617
200 Ga0070700_100006584
201 Ga0070665_100463474
202 Ga0070664_100192729
203 Ga0068859_100018689
204 Ga0068861_100077557
205 Ga0068863_100000626
206 Ga0068858_100029535
207 Ga0068860_100000430
208 Ga0068862_100000490
209 Ga0075365_10003348
210 Ga0075364_10015207
211 Ga0097620_100018688
212 Ga0105247_10000040
213 Ga0105248_10000357
214 Ga0105237_10025204
215 Ga0105237_10029344
216 Ga0105249_10000069
217 Ga0105239_10035832
218 Ga0105246_10056239
219 Ga0163162_10025385
220 Ga0157372_10059739
221 Ga0157380_10554903
222 Ga0157379_10022539
223 Ga0207427_100154
224 Ga0209437_100386
225 Ga0209233_1000001
226 Ga0209455_1002598
227 Ga0207710_10000050
228 Ga0207671_10007371
229 Ga0207671_10041642
230 Ga0207681_10073966
231 Ga0207690_10024142
232 Ga0207711_10000294
233 Ga0207651_10557580
234 Ga0207712_10000084
235 Ga0207668_10000867
236 Ga0207668_10039341
237 Ga0207668_10214317
238 Ga0207658_10000276
239 Ga0207703_10067402
240 Ga0207641_10001121
241 Ga0268266_10140955
242 Ga0268265_10000473
243 Ga0268264_10000473
244 Ga0265340_10001246
245 Ga0307516_10096376
246 Ga0307413_10473145
247 Ga0307410_10049483
248 Ga0307406_10047810
249 Ga0307406_10365061
250 Ga0307409_100233159
251 Ga0307416_100093175
252 Ga0307415_100106349
253 Ga0395900_0587854
254 Ga0395898_0028021
255 Ga0395901_0028320
256 Ga0451797_1133571
257 Ga0451839_0576006
258 Ga0451841_1369606
259 Ga0466965_0000010
260 Ga0466965_0174770
261 Ga0466970_0033805
262 Ga0466970_0102034
263 Ga0466960_0009377
264 Ga0495654_0176159
265 Ga0495624_0028219
266 Ga0495626_0045736
267 Ga0496100_0001341
268 Ga0496100_0023854
269 Ga0496100_0142917
270 Ga0496101_0001123
271 Ga0496101_0018680
272 Ga0496101_0120321
273 Ga0496102_0000016
274 Ga0496102_0002172
275 Ga0496102_0078286
276 Ga0496102_0681737
277 Ga0496103_0000015
278 Ga0496103_0002450
279 Ga0496103_0005508
280 Ga0496104_0059746
281 Ga0496105_0101207
282 Ga0496107_0243054
283 Ga0496109_0006165
284 Ga0496109_0233797
285 Ga0496110_0178744
286 Ga0496111_0049831
287 Ga0496112_0068834
288 Ga0496113_0028686
289 Ga0496114_0086443
290 Ga0496115_0013933
291 Ga0496116_0000055
292 Ga0496116_0028454
293 Ga0496116_0094304
294 Ga0496117_0000006
295 Ga0496117_0000184
296 Ga0496117_0002514
297 Ga0496117_0062328
298 Ga0496118_0000004
299 Ga0496118_0000142
300 Ga0496118_0004778
301 Ga0496118_0004912
302 Ga0496119_0001368
303 Ga0496119_0002383
304 Ga0496119_0009188
305 Ga0496119_0011272
306 Ga0496119_0012675
307 Ga0496120_0001045
308 Ga0496120_0001445
309 Ga0496120_0001501
310 Ga0496120_0008238
311 Ga0496120_0074442
312 Ga0496120_0138683
313 Ga0496121_0004087
314 Ga0496121_0044053
315 Ga0496122_0000065
316 Ga0496122_0007942
317 Ga0496122_0010721
318 Ga0496122_0083261
319 Ga0496123_0000006
320 Ga0496124_0000090
321 Ga0496124_0001530
322 Ga0496124_0014470
323 Ga0496124_0272598
324 Ga0496124_0361257
325 Ga0496125_0000894
326 Ga0496125_0004933
327 Ga0496125_0110880
328 Ga0496126_0000089
329 Ga0496126_0002350
330 Ga0496126_0015905
331 Ga0496126_0037013
332 Ga0496126_0297931
333 Ga0501031_0013913
334 Ga0501034_0080870
335 nmdc:mga03683_204969_c1
336 nmdc:mga03683_7796_c1
337 nmdc:mga0sz30_40787_c1
338 Ga0500556_0121631
339 Ga0500573_0028797
340 2643783500
341 2644095235
342 2644539021
343 2644680280
344 2730229732
345 2738696510
346 2739325649
347 2739605286
348 2747952359
349 2753303113
350 2758226694
351 2760307853
352 2809028515
353 2833711677
354 2839986906
355 2844850504
356 2857721406
357 2857723924
358 2857733667
359 2884764614
360 2899370824
361 2919044393
362 2928093702
363 2928107829
364 2929213285
365 2932431820
366 2945969925
367 2945970610
368 2946035468
369 2977267326
370 2984552263
371 2984578783
372 2984582597
373 2990257965
374 8016256984

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17765

MLTR_LBD

MmyB-like transcription regulator ligand binding domain

152

320

0.98

PF13560

HTH_31

Helix-turn-helix domain

55

134

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4yba-assembly1.cif.gz_A the structure of the c.kpn2i controller protein 0.9263 35 74
3zkc-assembly1.cif.gz_B crystal structure of the master regulator for biofilm formation sinr in complex with dna. 0.9188 6 77
3qq6-assembly1.cif.gz_A the n-terminal dna binding domain of sinr from bacillus subtilis 0.8999 6 84
1adr-assembly1.cif.gz_A determination of the nuclear magnetic resonance structure of the dna-binding domain of the p22 c2 repressor (1-76) in solution and comparison with the dna-binding domain of the 434 repressor 0.8929 6 84
3zkc-assembly1.cif.gz_A crystal structure of the master regulator for biofilm formation sinr in complex with dna. 0.8906 7 80
ID Description Score Start End Superfamily
4ybaA00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9263 35 74 1.10.260.40
3zkcB00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9188 6 77 1.10.260.40
3qq6B00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.8982 1 84 1.10.260.40
1adrA00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.8929 6 84 1.10.260.40
3zkcA00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.8906 7 80 1.10.260.40
ID Description Score Start End GO Terms
AF-A0A6B3FDD3-F1-model_v4 Helix-turn-helix domain-containing protein 0.9853 12 93 GO:0003677
AF-A0A2W4REA5-F1-model_v4 Transcriptional regulator 0.9735 3 87 GO:0003677
AF-A0A6N0YG92-F1-model_v4 deleted 0.9696 107 273
AF-A0A6B3VRU3-F1-model_v4 deleted 0.9667 6 89
AF-R1H424-F1-model_v4 XRE family transcriptional regulator 0.9639 121 278

Map