F288064

General Info

Members Datasets Scaffolds Average Seq Length
187 139 375 303

Family's Representative Sequence

Representative Sequence 3300041456|Ga0451795_0695533|Ga0451795_0695533_32_1060
Length 342
Sequence MITRSATGRNIMRDVLVIGGNRYFGKRLIDRLTAAGDRVTVLNRGSAPPPADVIHVVADRDDEAALNSALGDRTFDVVVDQVCYTPRQAVIARRVFGGDRTRRYVMTSTVEVYEYEDSLVYEDTVVPVREDAVDPLTVPVRLELPWHKPEFRETHYGEGKRQAEAVFAADDATGDSPDAGDHGVTAADGTRFPYTAVRVAHVLGGADDFTGRLDHYAQRIRTGTPIAVPTENRPATYIHVEEIADFLFWTVGEDFTGPVNAASHGLLTTEELCAAVARHIPAGKTVFQNVDVGQVSPFSFARSYGMDNSRATELGFTFGHVQEWLPRAVAETLGAETNGAGE

Samples

Sample ID Description Type Environment
1 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
7 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
8 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
9 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
10 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
11 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
12 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
13 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
14 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
15 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
16 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
17 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
18 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
19 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
20 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
21 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
22 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
23 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
24 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
25 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
26 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
27 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
28 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
29 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
30 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
31 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
32 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
33 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
34 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
35 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
36 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
37 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
38 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
39 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
40 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
41 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
42 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
43 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
44 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
45 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
46 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
47 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
48 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
49 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
50 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
51 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
52 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
53 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
54 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
55 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
56 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
57 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
58 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
59 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
60 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
61 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
62 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
63 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
64 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
65 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
66 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
67 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
68 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
69 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
70 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
71 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
72 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
73 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
74 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
75 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
76 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
77 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
78 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
79 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
80 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
81 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
82 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
83 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
84 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
85 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
88 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
89 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
90 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
91 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
92 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
93 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
94 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
95 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
96 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
97 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
98 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
99 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
100 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
101 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
102 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
103 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
104 2643221670 Streptomyces sp. Root431 Isolate Unclassified
105 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
106 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
107 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
108 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
109 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
110 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
111 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
112 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
113 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
114 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
115 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
116 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
117 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
118 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
119 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
120 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
121 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
122 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
123 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
124 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
125 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
126 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
127 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
128 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
129 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
130 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
131 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
132 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
133 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
134 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
135 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
136 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
137 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified
138 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
139 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.07
Metatranscriptomes 1.07
Isolates 20.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.42
Nodule 0
Rhizoplane 3.21
Rhizosphere 69.52
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451795_0695533 3300041456 Bacteria 1172
2 rootH1_10028304 3300003316 Bacteria 5734
3 rootH2_10189242 3300003320 Bacteria 1215
4 rootH2_10244123 3300003320 Bacteria 1301
5 rootH1_10025904 3300003323 Bacteria 3023
6 rootH1_10035881 3300003316 Bacteria 2477
7 rootH1_10035881 3300003323 Bacteria 2204
8 JGI25160J50197_1000347 3300003354 Bacteria 30782
9 Ga0006562J51391_1064063 3300003578 Bacteria 2270
10 Ga0006562J51391_1064064 3300003578 Bacteria 4310
11 Ga0075363_100023714 3300006048 Bacteria 3113
12 Ga0075370_10086260 3300006353 Bacteria 1808
13 Ga0105250_10074094 3300009092 Bacteria 1377
14 Ga0183367_1002 3300015688 Bacteria 1101531
15 Ga0207426_1000838 3300025302 Bacteria 32556
16 Ga0207639_10040870 3300026041 Bacteria 3465
17 Ga0307515_10000813 3300028794 Bacteria 71821
18 Ga0307515_10214948 3300028794 Bacteria 1756
19 Ga0307511_10005997 3300030521 Bacteria 12269
20 Ga0307511_10035612 3300030521 Bacteria 4343
21 Ga0307513_10059497 3300031456 Bacteria 4055
22 Ga0307509_10180053 3300031507 Bacteria 1980
23 Ga0307508_10046370 3300031616 Bacteria 3881
24 Ga0307508_10074272 3300031616 Bacteria 2976
25 Ga0307514_10055188 3300031649 Bacteria 3056
26 Ga0307514_10168438 3300031649 Bacteria 1436
27 Ga0307518_10018072 3300031838 Bacteria 5054
28 Ga0307507_10006461 3300033179 Bacteria 17992
29 Ga0307507_10034258 3300033179 Bacteria 5250
30 Ga0307510_10029944 3300033180 Bacteria 6182
31 Ga0307510_10059729 3300033180 Bacteria 3933
32 Ga0307510_10083353 3300033180 Bacteria 3087
33 Ga0395898_0016940 3300037466 Bacteria 7440
34 Ga0395898_0056774 3300037466 Bacteria 3816
35 Ga0395901_0297379 3300038443 Bacteria 1674
36 Ga0439436_0023966 3300041404 Bacteria 1803
37 Ga0439436_0038350 3300041404 Bacteria 1378
38 Ga0439433_0000780 3300041999 Bacteria 6282
39 Ga0439448_0000913 3300042005 Bacteria 7274
40 Ga0439449_0001440 3300042007 Bacteria 9301
41 Ga0439449_0014761 3300042007 Bacteria 2934
42 Ga0439449_0022447 3300042007 Bacteria 2363
43 Ga0439457_004305 3300042014 Bacteria 3738
44 Ga0450903_000271 3300042138 Bacteria 11380
45 Ga0439458_0030312 3300042157 Bacteria 1286
46 Ga0495627_024310 3300046453 Bacteria 1976
47 Ga0495592_0013887 3300046454 Bacteria 6120
48 Ga0495603_0002135 3300046455 Bacteria 11630
49 Ga0495590_0046846 3300046457 Bacteria 1508
50 Ga0495629_0009558 3300046459 Bacteria 7087
51 Ga0495629_0022764 3300046459 Bacteria 4465
52 Ga0495629_0058055 3300046459 Bacteria 2705
53 Ga0495629_0096669 3300046459 Bacteria 2060
54 Ga0495629_0116083 3300046459 Bacteria 1865
55 Ga0495651_0003241 3300046462 Bacteria 12494
56 Ga0495582_0036690 3300046473 Bacteria 2696
57 Ga0495639_0005255 3300046475 Bacteria 5566
58 Ga0495662_0002212 3300046476 Bacteria 9804
59 Ga0495662_0021833 3300046476 Bacteria 3093
60 Ga0495662_0036505 3300046476 Bacteria 2371
61 Ga0495664_0005898 3300046477 Bacteria 6742
62 Ga0495584_0059422 3300046491 Bacteria 1923
63 Ga0495594_0016132 3300046499 Bacteria 3932
64 Ga0495594_0019757 3300046499 Bacteria 3583
65 Ga0495594_0035043 3300046499 Bacteria 2732
66 Ga0495607_0056773 3300046501 Bacteria 2246
67 Ga0495610_0021679 3300046512 Bacteria 3527
68 Ga0495618_0017624 3300046514 Bacteria 4381
69 Ga0495620_0041440 3300046515 Bacteria 2019
70 Ga0495628_0016440 3300046516 Bacteria 6173
71 Ga0495630_0051375 3300046517 Bacteria 3086
72 Ga0495637_0029536 3300046520 Bacteria 2440
73 Ga0495643_0001648 3300046522 Bacteria 19654
74 Ga0495643_0042984 3300046522 Bacteria 2460
75 Ga0495666_0059969 3300046526 Bacteria 1819
76 Ga0495640_0008423 3300046533 Bacteria 8088
77 Ga0495587_0023645 3300046536 Bacteria 3775
78 Ga0495645_0131781 3300046543 Bacteria 1751
79 Ga0495622_0005530 3300046557 Bacteria 5858
80 Ga0495668_0096291 3300046616 Bacteria 1619
81 Ga0495668_0125208 3300046616 Bacteria 1406
82 Ga0495634_0004409 3300046642 Bacteria 11066
83 Ga0495611_0061140 3300046648 Bacteria 1711
84 Ga0495625_0003647 3300046660 Bacteria 15099
85 Ga0495625_0099702 3300046660 Bacteria 1997
86 Ga0495635_0003557 3300046663 Bacteria 10781
87 Ga0495588_0003032 3300046674 Bacteria 7271
88 Ga0495588_0110388 3300046674 Bacteria 1448
89 Ga0495657_0025902 3300046675 Bacteria 4160
90 Ga0495657_0093805 3300046675 Bacteria 1920
91 Ga0495657_0161229 3300046675 Bacteria 1387
92 Ga0495657_0179902 3300046675 Bacteria 1298
93 Ga0495646_0008294 3300046680 Bacteria 6606
94 Ga0495613_0002355 3300046689 Bacteria 14312
95 Ga0495613_0010342 3300046689 Bacteria 6931
96 Ga0495613_0014925 3300046689 Bacteria 5765
97 Ga0495624_0039240 3300046690 Bacteria 3036
98 Ga0495624_0063449 3300046690 Bacteria 2309
99 Ga0495624_0070128 3300046690 Bacteria 2182
100 Ga0495670_0041856 3300046691 Bacteria 2286
101 Ga0495670_0044842 3300046691 Bacteria 2208
102 Ga0495671_0056883 3300046692 Bacteria 1936
103 Ga0495649_0043820 3300046694 Bacteria 2442
104 Ga0495649_0160800 3300046694 Bacteria 1177
105 Ga0495589_0021873 3300046794 Bacteria 3267
106 Ga0495581_0002575 3300047315 Bacteria 10304
107 Ga0495581_0039191 3300047315 Bacteria 2743
108 Ga0495581_0072926 3300047315 Bacteria 1987
109 Ga0495604_0000568 3300047317 Bacteria 32485
110 Ga0495604_0165534 3300047317 Bacteria 1559
111 Ga0495636_0000608 3300047318 Bacteria 13135
112 Ga0495636_0052514 3300047318 Bacteria 1710
113 Ga0495674_0299783 3300047319 Bacteria 1313
114 Ga0495676_0020475 3300047321 Bacteria 5801
115 Ga0495687_014075 3300047443 Bacteria 4137
116 Ga0495675_0019870 3300047444 Bacteria 4269
117 Ga0495675_0033603 3300047444 Bacteria 3273
118 Ga0495677_0035158 3300047445 Bacteria 1829
119 Ga0495685_010911 3300047447 Bacteria 3054
120 Ga0495685_011719 3300047447 Bacteria 2963
121 Ga0495685_056524 3300047447 Bacteria 1326
122 Ga0495681_0000847 3300047470 Bacteria 23590
123 Ga0495681_0023902 3300047470 Bacteria 3233
124 Ga0495684_0323205 3300047471 Bacteria 1103
125 Ga0495686_0076396 3300047472 Bacteria 2052
126 Ga0495686_0168994 3300047472 Bacteria 1273
127 Ga0495593_0002909 3300047673 Bacteria 10321
128 Ga0495593_0006647 3300047673 Bacteria 6768
129 Ga0495593_0070553 3300047673 Bacteria 1815
130 Ga0495602_0154057 3300048088 Bacteria 1802
131 Ga0495614_0004788 3300048089 Bacteria 6108
132 Ga0495614_0024525 3300048089 Bacteria 2603
133 Ga0495614_0045430 3300048089 Bacteria 1883
134 Ga0495626_0045537 3300048091 Bacteria 2047
135 Ga0496109_0026152 3300048912 Bacteria 5203
136 Ga0496110_0545182 3300048913 Bacteria 1054
137 Ga0496112_0551878 3300048915 Bacteria 1086
138 Ga0496113_0292107 3300048916 Bacteria 1304
139 Ga0496126_0373138 3300048929 Bacteria 1163
140 Ga0495612_0010649 3300053078 Bacteria 3716
141 Ga0495595_0046606 3300053084 Bacteria 1998
142 Ga0500578_0051653 3300053086 Bacteria 2633
143 Ga0500640_028176 3300053095 Bacteria 2452
144 Ga0500654_049211 3300053099 Bacteria 2291
145 Ga0500569_002236 3300053109 Bacteria 3785
146 Ga0500561_0000985 3300053137 Bacteria 4566
147 Ga0500579_058384 3300053143 Bacteria 2309
148 Ga0500600_0043541 3300053149 Bacteria 2578
149 Ga0500616_0008686 3300053153 Bacteria 6272
150 2585319299 2582581314 Bacteria 11452267
151 2616697351 2616644814 Bacteria 11555299
152 2643943966 2643221587 Bacteria 7586415
153 2644386949 2643221670 Bacteria 6497041
154 2644434703 2643221677 Bacteria 7584031
155 2644440098 2643221678 Bacteria 9540101
156 2785371555 2784746768 Bacteria 10036182
157 2786672716 2786546132 Bacteria 10419719
158 2793981384 2791355406 Bacteria 11364898
159 2808844075 2808606359 Bacteria 9866990
160 2809586380 2808606522 Bacteria 9488490
161 2812355894 2811994879 Bacteria 9313447
162 2819746973 2818991472 Bacteria 10089953
163 2862186466 2862178590 Bacteria 8583590
164 2862284684 2862281513 Bacteria 9621493
165 2877679055 2877676314 Bacteria 9512378
166 2891560554 2891554331 Bacteria 8812224
167 2912720561 2912715099 Bacteria 9460473
168 2915775952 2915768154 Bacteria 8424322
169 2918506556 2918501144 Bacteria 8668083
170 2919471779 2919468124 Bacteria 9133025
171 2946069893 2946064051 Bacteria 8957905
172 2947226894 2947224130 Bacteria 9938529
173 2954005536 2954002825 Bacteria 9173742
174 2954383955 2954380949 Bacteria 10050426
175 2954679009 2954673503 Bacteria 9685905
176 2954685143 2954682443 Bacteria 9862841
177 2954694750 2954691527 Bacteria 10720516
178 2954709952 2954701450 Bacteria 10834262
179 3006486781 3006486233 Bacteria 8157040
180 8047902173 8047893842 Bacteria 11723082
181 8048369970 8048369669 Bacteria 11666822
182 8048389375 8048379754 Bacteria 11877923
183 8054163757 8054160619 Bacteria 7783213
184 8055180314 8055172936 Bacteria 9305943
185 8056057938 8056054917 Bacteria 5736694
186 8056060726 8056060235 Bacteria 7259403
187 8056452086 8056447290 Bacteria 7680491
188 8056832250 8056829672 Bacteria 9045328
189 Ga0451795_0695533
190 rootH1_10028304
191 rootH2_10189242
192 rootH2_10244123
193 rootH1_10025904
194 rootH1_10035881
195 JGI25160J50197_1000347
196 Ga0006562J51391_1064063
197 Ga0006562J51391_1064064
198 Ga0075363_100023714
199 Ga0075370_10086260
200 Ga0105250_10074094
201 Ga0183367_1002
202 Ga0207426_1000838
203 Ga0207639_10040870
204 Ga0307515_10000813
205 Ga0307515_10214948
206 Ga0307511_10005997
207 Ga0307511_10035612
208 Ga0307513_10059497
209 Ga0307509_10180053
210 Ga0307508_10046370
211 Ga0307508_10074272
212 Ga0307514_10055188
213 Ga0307514_10168438
214 Ga0307518_10018072
215 Ga0307507_10006461
216 Ga0307507_10034258
217 Ga0307510_10029944
218 Ga0307510_10059729
219 Ga0307510_10083353
220 Ga0395898_0016940
221 Ga0395898_0056774
222 Ga0395901_0297379
223 Ga0439436_0023966
224 Ga0439436_0038350
225 Ga0439433_0000780
226 Ga0439448_0000913
227 Ga0439449_0001440
228 Ga0439449_0014761
229 Ga0439449_0022447
230 Ga0439457_004305
231 Ga0450903_000271
232 Ga0439458_0030312
233 Ga0495627_024310
234 Ga0495592_0013887
235 Ga0495603_0002135
236 Ga0495590_0046846
237 Ga0495629_0009558
238 Ga0495629_0022764
239 Ga0495629_0058055
240 Ga0495629_0096669
241 Ga0495629_0116083
242 Ga0495651_0003241
243 Ga0495582_0036690
244 Ga0495639_0005255
245 Ga0495662_0002212
246 Ga0495662_0021833
247 Ga0495662_0036505
248 Ga0495664_0005898
249 Ga0495584_0059422
250 Ga0495594_0016132
251 Ga0495594_0019757
252 Ga0495594_0035043
253 Ga0495607_0056773
254 Ga0495610_0021679
255 Ga0495618_0017624
256 Ga0495620_0041440
257 Ga0495628_0016440
258 Ga0495630_0051375
259 Ga0495637_0029536
260 Ga0495643_0001648
261 Ga0495643_0042984
262 Ga0495666_0059969
263 Ga0495640_0008423
264 Ga0495587_0023645
265 Ga0495645_0131781
266 Ga0495622_0005530
267 Ga0495668_0096291
268 Ga0495668_0125208
269 Ga0495634_0004409
270 Ga0495611_0061140
271 Ga0495625_0003647
272 Ga0495625_0099702
273 Ga0495635_0003557
274 Ga0495588_0003032
275 Ga0495588_0110388
276 Ga0495657_0025902
277 Ga0495657_0093805
278 Ga0495657_0161229
279 Ga0495657_0179902
280 Ga0495646_0008294
281 Ga0495613_0002355
282 Ga0495613_0010342
283 Ga0495613_0014925
284 Ga0495624_0039240
285 Ga0495624_0063449
286 Ga0495624_0070128
287 Ga0495670_0041856
288 Ga0495670_0044842
289 Ga0495671_0056883
290 Ga0495649_0043820
291 Ga0495649_0160800
292 Ga0495589_0021873
293 Ga0495581_0002575
294 Ga0495581_0039191
295 Ga0495581_0072926
296 Ga0495604_0000568
297 Ga0495604_0165534
298 Ga0495636_0000608
299 Ga0495636_0052514
300 Ga0495674_0299783
301 Ga0495676_0020475
302 Ga0495687_014075
303 Ga0495675_0019870
304 Ga0495675_0033603
305 Ga0495677_0035158
306 Ga0495685_010911
307 Ga0495685_011719
308 Ga0495685_056524
309 Ga0495681_0000847
310 Ga0495681_0023902
311 Ga0495684_0323205
312 Ga0495686_0076396
313 Ga0495686_0168994
314 Ga0495593_0002909
315 Ga0495593_0006647
316 Ga0495593_0070553
317 Ga0495602_0154057
318 Ga0495614_0004788
319 Ga0495614_0024525
320 Ga0495614_0045430
321 Ga0495626_0045537
322 Ga0496109_0026152
323 Ga0496110_0545182
324 Ga0496112_0551878
325 Ga0496113_0292107
326 Ga0496126_0373138
327 Ga0495612_0010649
328 Ga0495595_0046606
329 Ga0500578_0051653
330 Ga0500640_028176
331 Ga0500654_049211
332 Ga0500569_002236
333 Ga0500561_0000985
334 Ga0500579_058384
335 Ga0500600_0043541
336 Ga0500616_0008686
337 2585319299
338 2616697351
339 2643943966
340 2644386949
341 2644434703
342 2644440098
343 2785371555
344 2786672716
345 2793981384
346 2808844075
347 2809586380
348 2812355894
349 2819746973
350 2862186466
351 2862284684
352 2877679055
353 2891560554
354 2912720561
355 2915775952
356 2918506556
357 2919471779
358 2946069893
359 2947226894
360 2954005536
361 2954383955
362 2954679009
363 2954685143
364 2954694750
365 2954709952
366 3006486781
367 8047902173
368 8048369970
369 8048389375
370 8054163757
371 8055180314
372 8056057938
373 8056060726
374 8056452086
375 8056832250

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

15

96

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4czz-assembly1.cif.gz_A histone demethylase lsd1(kdm1a)-corest3 complex 0.8201 4 41
5l3b-assembly1.cif.gz_A human lsd1/corest: lsd1 d556g mutation 0.8185 4 41
2pzl-assembly1.cif.gz_B crystal structure of the bordetella bronchiseptica enzyme wbmg in complex with nad and udp 0.7898 2 300
2pzk-assembly1.cif.gz_B crystal structure of the bordetella bronchiseptica enzyme wbmg in complex with nad 0.7799 2 300
3gpi-assembly1.cif.gz_A structure of putative nad-dependent epimerase/dehydratase from methylobacillus flagellatus 0.7714 3 296
ID Description Score Start End Superfamily
3lk7A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8768 5 36 3.40.50.720
af_Q5QMG5_99_194_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8166 4 54 3.40.50.720
af_M9NFH8_1768_1873_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8163 5 41 3.40.50.720
af_I1KVW6_141_273_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8033 5 91 3.40.50.20
af_P9WHH3_154_271_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8023 2 38 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A0M8WLS7-F1-model_v4 Reductase 0.9883 5 303
AF-A0A2N9B6H7-F1-model_v4 NAD dependent epimerase/dehydratase family protein 0.9748 97 303
AF-A0A6B2UBU2-F1-model_v4 deleted 0.9731 158 288
AF-A0A0M8WLS7-F1-model_v4 Reductase 0.9721 5 303
AF-A0A2N9B6H7-F1-model_v4 NAD dependent epimerase/dehydratase family protein 0.9701 97 303

Map