F287720

General Info

Members Datasets Scaffolds Average Seq Length
187 148 171 372

Family's Representative Sequence

Representative Sequence 3300021388|Ga0213875_10000052|Ga0213875_1000005272
Length 412
Sequence MNLRSTVKSNAVNWEAMPATDSHRTPLVVMPIFGTRPEAVKMAPLVNLLKSRPQEFRCVVGVTAQHRQILDQVLEFFAIKPDYDLNIMQTGQTLTQVTTRALEGLEGVLQKVQPDIVLAQGDTTTVLAAAMAAAYQKIAFGHVEAGLRTDNKFDPFPEEINRRLTGQLTDLHFAPTQRARENLLHEGIKADSIYLTGNTVIDALHQVAKRVHEADTTLTNGQQDGSKERILLVTTHRRENWGAPLEEIAGALHDIVEKFPDTRIILPMHPNPTVREPLQRILGQHPRVELIEPQDYVDLVRLMEKSHLVLTDSGGVQEEAPALGLPVLVLRRTTERPEGVDAGTAKLVGTRREDIVQAASVLLGDQQAYEAMSRAANPYGDGHASERIAQAILHWAGRDSRPDDFTIEASQS

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231156 Pseudomonas ogarae F113 Isolate Rhizosphere
3 2512047018 Pseudomonas chlororaphis chlororaphis GP72 Isolate Rhizosphere
4 2524614729 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
5 2582580891 Pseudomonas chlororaphis YL-1 Isolate Unclassified
6 2599185239 Burkholderia sp. NFACC38-1 Isolate Rhizoplane
7 2627854209 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
8 2643221650 Pseudomonas sp. Root401 Isolate Unclassified
9 2818991452 Burkholderia cepacia 561 Isolate Unclassified
10 2825651385 Pseudomonas brassicacearum L13-6-12 Isolate Rhizosphere
11 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
12 2928170801 Burkholderia sp. 572 Isolate Unclassified
13 2931369376 Pseudomonas fluorescens DR133 Isolate Rhizosphere
14 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
15 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
16 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
17 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
18 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
19 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
20 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
21 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
22 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
23 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
24 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
25 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
26 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
27 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
28 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
29 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
30 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
31 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
32 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
33 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
34 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
35 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
36 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
37 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
38 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
39 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
40 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
41 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
42 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
43 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
44 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
45 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
46 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
47 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
50 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
57 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
58 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
59 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
60 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
61 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
62 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
63 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
64 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
65 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
68 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
69 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
70 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
73 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
75 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
77 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
98 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
100 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
101 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
102 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
103 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
104 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
105 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
106 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
107 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
108 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
109 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
110 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
111 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
112 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
113 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
114 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
115 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
116 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
117 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
118 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
119 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
120 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
121 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
122 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
123 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
124 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
125 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
126 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
127 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
128 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
129 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
130 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
131 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
132 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
133 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
134 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
135 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
136 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
137 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
138 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
139 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
140 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
141 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
142 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
143 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
144 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
145 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
146 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
147 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
148 8021120328 Burkholderia sp. LS-044 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.44
Metatranscriptomes 0
Isolates 8.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.72
Nodule 1.07
Rhizoplane 5.88
Rhizosphere 67.38
Stem 0
Stem Tuber 0
Unclassified 6.95

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1903306 2162886007 Bacteria 5685
2 JGI25162J39368_1000550 3300002737 Bacteria 27765
3 JGI25164J39214_1000269 3300002772 Bacteria 38654
4 JGI25165J46597_1000795 3300003214 Bacteria 23939
5 Ga0055526_1000728 3300003771 Bacteria 24897
6 Ga0055536_1000251 3300003781 Bacteria 42530
7 Ga0055536_1000547 3300003781 Bacteria 25802
8 Ga0055530_10001240 3300003791 Bacteria 19470
9 Ga0055540_1000583 3300003792 Bacteria 26648
10 Ga0055540_1002173 3300003792 Bacteria 10668
11 Ga0055531_10011387 3300003794 Bacteria 4296
12 Ga0065714_10002369 3300005288 Bacteria 21310
13 Ga0065714_10002786 3300005288 Bacteria 21761
14 Ga0065714_10064873 3300005288 Bacteria 16509
15 Ga0065704_10000243 3300005289 Bacteria 54713
16 Ga0065712_10135070 3300005290 Bacteria 1506
17 Ga0065715_10141397 3300005293 Bacteria 1848
18 Ga0070658_10057759 3300005327 Bacteria 3157
19 Ga0070658_10268218 3300005327 Bacteria 1451
20 Ga0070683_100001907 3300005329 Bacteria 16311
21 Ga0070670_100000141 3300005331 Bacteria 67499
22 Ga0070682_100026717 3300005337 Bacteria 3458
23 Ga0070661_100138239 3300005344 Bacteria 1834
24 Ga0070669_100196986 3300005353 Bacteria 1583
25 Ga0070675_100068310 3300005354 Bacteria 2943
26 Ga0070678_100004175 3300005456 Bacteria 8154
27 Ga0070662_100052387 3300005457 Bacteria 2950
28 Ga0070681_10005422 3300005458 Bacteria 12322
29 Ga0070699_100020152 3300005518 Bacteria 5747
30 Ga0070679_100008155 3300005530 Bacteria 9841
31 Ga0070684_100000344 3300005535 Bacteria 31949
32 Ga0070697_100000103 3300005536 Bacteria 69907
33 Ga0070693_100017724 3300005547 Unclassified 3708
34 Ga0070665_100017632 3300005548 Bacteria 7170
35 Ga0070665_100046753 3300005548 Bacteria 4345
36 Ga0075364_10000772 3300006051 Bacteria 16830
37 Ga0068865_100010396 3300006881 Bacteria 5792
38 Ga0079104_1000094 3300006946 Bacteria 130202
39 Ga0105251_10000955 3300009011 Bacteria 25755
40 Ga0105251_10002018 3300009011 Bacteria 16479
41 Ga0105251_10026629 3300009011 Bacteria 2943
42 Ga0105244_10000477 3300009036 Bacteria 36264
43 Ga0105240_10000023 3300009093 Bacteria 385028
44 Ga0105245_10002646 3300009098 Bacteria 16119
45 Ga0105241_10030053 3300009174 Unclassified 4058
46 Ga0105241_10216094 3300009174 Unclassified 1609
47 Ga0105237_10002927 3300009545 Bacteria 20669
48 Ga0105239_10000064 3300010375 Bacteria 151674
49 Ga0105239_10000749 3300010375 Bacteria 46059
50 Ga0105239_10204225 3300010375 Bacteria 2214
51 Ga0157373_10000589 3300013100 Bacteria 28284
52 Ga0157371_10001656 3300013102 Bacteria 22716
53 Ga0157370_10001726 3300013104 Bacteria 26910
54 Ga0157374_10008085 3300013296 Bacteria 8993
55 Ga0163162_10012666 3300013306 Bacteria 8235
56 Ga0157372_10000539 3300013307 Bacteria 41692
57 Ga0157375_10003290 3300013308 Bacteria 13993
58 Ga0182008_10001910 3300014497 Bacteria 13487
59 Ga0182008_10005343 3300014497 Bacteria 7335
60 Ga0182006_1048111 3300015261 Bacteria 1650
61 Ga0182007_10000396 3300015262 Bacteria 26975
62 Ga0163161_10000567 3300017792 Bacteria 29818
63 Ga0213875_10000052 3300021388 Bacteria 142140
64 Ga0209566_100564 3300025225 Bacteria 24326
65 Ga0209674_102127 3300025226 Bacteria 4470
66 Ga0207427_100235 3300025231 Bacteria 45748
67 Ga0209437_100223 3300025233 Bacteria 102763
68 Ga0209233_1000272 3300025261 Bacteria 73393
69 Ga0209673_1004257 3300025273 Bacteria 7777
70 Ga0209676_1000038 3300025292 Bacteria 449305
71 Ga0209676_1000222 3300025292 Bacteria 124695
72 Ga0209676_1001773 3300025292 Bacteria 18191
73 Ga0209676_1011610 3300025292 Bacteria 3534
74 Ga0209025_1007431 3300025294 Bacteria 8175
75 Ga0209564_1000350 3300025295 Bacteria 86762
76 Ga0209564_1005070 3300025295 Bacteria 7688
77 Ga0209758_1010953 3300025297 Bacteria 5332
78 Ga0209050_1001194 3300025298 Bacteria 30546
79 Ga0209050_1001397 3300025298 Bacteria 26192
80 Ga0209050_1010079 3300025298 Bacteria 4712
81 Ga0209256_1000523 3300025299 Bacteria 55970
82 Ga0209051_1000487 3300025303 Bacteria 51194
83 Ga0209051_1000870 3300025303 Bacteria 30546
84 Ga0209257_1000306 3300025304 Bacteria 105616
85 Ga0209257_1006225 3300025304 Bacteria 7826
86 Ga0207655_1002412 3300025728 Bacteria 15213
87 Ga0207713_1000955 3300025735 Bacteria 25763
88 Ga0207713_1001786 3300025735 Bacteria 16459
89 Ga0207707_10057325 3300025912 Bacteria 3390
90 Ga0207695_10000016 3300025913 Bacteria 771991
91 Ga0207695_10000184 3300025913 Bacteria 181201
92 Ga0207695_10026445 3300025913 Bacteria 6476
93 Ga0207671_10016892 3300025914 Bacteria 5650
94 Ga0207649_10156328 3300025920 Bacteria 1576
95 Ga0207652_10019020 3300025921 Bacteria 5641
96 Ga0207681_10038014 3300025923 Bacteria 3186
97 Ga0207650_10000089 3300025925 Bacteria 120962
98 Ga0207659_10114990 3300025926 Bacteria 2052
99 Ga0207687_10007561 3300025927 Bacteria 7146
100 Ga0207706_10081029 3300025933 Bacteria 2853
101 Ga0207704_10005429 3300025938 Bacteria 5881
102 Ga0207691_10075789 3300025940 Bacteria 3032
103 Ga0207661_10006042 3300025944 Bacteria 8554
104 Ga0207708_10288734 3300026075 Bacteria 1331
105 Ga0207702_10006523 3300026078 Bacteria 10040
106 Ga0207683_10010206 3300026121 Bacteria 8009
107 Ga0209281_1000212 3300027111 Bacteria 130216
108 Ga0268266_10011407 3300028379 Bacteria 7727
109 Ga0268266_10102784 3300028379 Bacteria 2521
110 Ga0265316_10001001 3300031344 Bacteria 30663
111 Ga0307406_10069434 3300031901 Bacteria 2303
112 Ga0307412_10000459 3300031911 Bacteria 24584
113 Ga0307409_100044960 3300031995 Bacteria 3330
114 Ga0307414_10063783 3300032004 Bacteria 2620
115 Ga0373937_0086008 3300036401 Bacteria 2910
116 Ga0436364_0085187 3300037853 Bacteria 197036
117 Ga0237819_00441 3300038705 Bacteria 14233
118 Ga0400484_32216 3300038725 Bacteria 7431
119 Ga0436365_0544588 3300039437 Bacteria 4031
120 Ga0436365_1558887 3300039437 Bacteria 4314
121 Ga0439438_000232 3300041405 Bacteria 25314
122 Ga0439438_000360 3300041405 Bacteria 20358
123 Ga0439438_000740 3300041405 Bacteria 14698
124 Ga0439438_002439 3300041405 Bacteria 7922
125 Ga0439438_018938 3300041405 Bacteria 1953
126 Ga0439447_001443 3300041407 Bacteria 8725
127 Ga0439447_005119 3300041407 Bacteria 4400
128 Ga0439447_009495 3300041407 Bacteria 2943
129 Ga0439466_0000180 3300041411 Bacteria 25149
130 Ga0439466_0000299 3300041411 Bacteria 19156
131 Ga0451843_1112622 3300041509 Bacteria 2164
132 Ga0439432_000090 3300042006 Bacteria 28639
133 Ga0439432_004709 3300042006 Bacteria 4968
134 Ga0439451_000329 3300042009 Bacteria 9190
135 Ga0439451_000393 3300042009 Bacteria 8517
136 Ga0439452_000404 3300042010 Bacteria 25488
137 Ga0439452_000817 3300042010 Bacteria 14523
138 Ga0439452_008717 3300042010 Bacteria 3032
139 Ga0439452_011192 3300042010 Bacteria 2585
140 Ga0439463_000052 3300042016 Bacteria 24955
141 Ga0450907_000214 3300042146 Bacteria 20555
142 Ga0450909_000161 3300042185 Bacteria 7260
143 Ga0439460_0000021 3300042461 Bacteria 22882
144 Ga0466972_0009030 3300044658 Bacteria 5003
145 Ga0451576_0105568 3300045051 Bacteria 2931
146 Ga0495603_0061126 3300046455 Bacteria 2225
147 Ga0495638_0022359 3300046460 Bacteria 4151
148 Ga0495607_0001105 3300046501 Bacteria 24543
149 Ga0495610_0000774 3300046512 Bacteria 30147
150 Ga0495622_0000309 3300046557 Bacteria 36399
151 Ga0495659_0002238 3300046664 Bacteria 6286
152 Ga0495661_0001439 3300046665 Bacteria 19899
153 Ga0495588_0000401 3300046674 Bacteria 24521
154 Ga0495613_0000648 3300046689 Bacteria 27667
155 Ga0495670_0000287 3300046691 Bacteria 23738
156 Ga0495681_0003072 3300047470 Bacteria 11710
157 Ga0496101_0135669 3300048904 Bacteria 1872
158 Ga0496102_0019291 3300048905 Bacteria 6007
159 Ga0496104_0040903 3300048907 Unclassified 4346
160 Ga0496105_0068301 3300048908 Bacteria 2936
161 Ga0496108_0212628 3300048911 Bacteria 1679
162 Ga0496109_0274946 3300048912 Bacteria 1587
163 Ga0496111_0042305 3300048914 Bacteria 3271
164 Ga0496114_0000687 3300048917 Bacteria 25152
165 Ga0496115_0173710 3300048918 Bacteria 1782
166 Ga0496115_0264877 3300048918 Bacteria 1413
167 Ga0496116_0001453 3300048919 Bacteria 26579
168 Ga0501031_0052623 3300049568 Bacteria 2653
169 nmdc:mga00v17_1521_c1 3300050491 Bacteria 12113
170 Ga0500627_0017412 3300053158 Bacteria 2823
171 Ga0501084_0305323 3300054114 Bacteria 1344

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031344 Ga0265316_10001001 Ga0265316_1000100115 333
2 3300048912 Ga0496109_0274946 Ga0496109_0274946_190_1266 334
3 3300003781 Ga0055536_1000251 Ga0055536_100025143 340
4 3300003794 Ga0055531_10011387 Ga0055531_100113872 340
5 3300025304 Ga0209257_1000306 Ga0209257_1000306116 340
6 3300031901 Ga0307406_10069434 Ga0307406_100694342 340
7 iso_pu_bacteria 2599185239 2599739304 345
8 iso_pu_bacteria 2818991452 2819632687 345
9 iso_pu_bacteria 2928170801 2928173203 345
10 iso_pu_bacteria 8021120328 8021122577 345
11 3300025914 Ga0207671_10016892 Ga0207671_100168923 347
12 3300005327 Ga0070658_10268218 Ga0070658_102682181 348
13 3300039437 Ga0436365_0544588 Ga0436365_0544588_901_1971 348
14 3300025225 Ga0209566_100564 Ga0209566_1005642 349
15 3300025226 Ga0209674_102127 Ga0209674_1021272 349
16 3300041509 Ga0451843_1112622 Ga0451843_1112622_16_1107 349
17 3300047470 Ga0495681_0003072 Ga0495681_0003072_10448_11497 349
18 3300039437 Ga0436365_1558887 Ga0436365_1558887_1173_2255 352
19 3300041405 Ga0439438_000740 Ga0439438_000740_11781_12857 358
20 3300005535 Ga0070684_100000344 Ga0070684_1000003449 360
21 3300009098 Ga0105245_10002646 Ga0105245_100026465 360
22 3300009174 Ga0105241_10030053 Ga0105241_100300533 360
23 3300013296 Ga0157374_10008085 Ga0157374_100080857 360
24 3300048904 Ga0496101_0135669 Ga0496101_0135669_601_1755 360
25 3300048905 Ga0496102_0019291 Ga0496102_0019291_1502_2656 360
26 3300048907 Ga0496104_0040903 Ga0496104_0040903_1813_2967 360
27 3300048908 Ga0496105_0068301 Ga0496105_0068301_1001_2155 360
28 3300048911 Ga0496108_0212628 Ga0496108_0212628_207_1361 360
29 3300048914 Ga0496111_0042305 Ga0496111_0042305_1915_3069 360
30 3300048917 Ga0496114_0000687 Ga0496114_0000687_13800_14954 360
31 3300048918 Ga0496115_0173710 Ga0496115_0173710_380_1534 360
32 3300009093 Ga0105240_10000023 Ga0105240_1000002336 363
33 3300010375 Ga0105239_10000749 Ga0105239_1000074924 363
34 3300025273 Ga0209673_1004257 Ga0209673_10042572 363
35 3300025295 Ga0209564_1005070 Ga0209564_10050702 363
36 3300025299 Ga0209256_1000523 Ga0209256_10005239 363
37 3300025913 Ga0207695_10000016 Ga0207695_10000016282 363
38 3300025913 Ga0207695_10000184 Ga0207695_1000018422 363
39 3300044658 Ga0466972_0009030 Ga0466972_0009030_1257_2375 363
40 3300046460 Ga0495638_0022359 Ga0495638_0022359_50_1171 363
41 3300053158 Ga0500627_0017412 Ga0500627_0017412_418_1539 363
42 iso_pu_bacteria 2834641062 2834641349 363
43 iso_pu_bacteria 8003400568 8003400977 363
44 3300009545 Ga0105237_10002927 Ga0105237_1000292710 364
45 3300010375 Ga0105239_10000064 Ga0105239_1000006415 364
46 3300013100 Ga0157373_10000589 Ga0157373_1000058916 364
47 3300013104 Ga0157370_10001726 Ga0157370_1000172615 364
48 3300013307 Ga0157372_10000539 Ga0157372_1000053917 364
49 3300014497 Ga0182008_10001910 Ga0182008_1000191013 364
50 3300041407 Ga0439447_001443 Ga0439447_001443_6666_7760 364
51 3300041411 Ga0439466_0000299 Ga0439466_0000299_6698_7792 364
52 3300042009 Ga0439451_000393 Ga0439451_000393_4504_5598 364
53 3300042010 Ga0439452_000404 Ga0439452_000404_16287_17381 364
54 3300042010 Ga0439452_011192 Ga0439452_011192_1455_2549 364
55 3300046501 Ga0495607_0001105 Ga0495607_0001105_20608_21702 364
56 3300046664 Ga0495659_0002238 Ga0495659_0002238_3806_4900 364
57 3300046665 Ga0495661_0001439 Ga0495661_0001439_16891_17985 364
58 3300046689 Ga0495613_0000648 Ga0495613_0000648_11520_12614 364
59 3300046691 Ga0495670_0000287 Ga0495670_0000287_1939_3033 364
60 3300048919 Ga0496116_0001453 Ga0496116_0001453_15572_16666 364
61 iso_pu_bacteria 2512047018 2512325316 364
62 iso_pu_bacteria 2582580891 2583795413 364
63 iso_pu_bacteria 8003400568 8003400986 364
64 3300025292 Ga0209676_1000038 Ga0209676_1000038160 365
65 3300025298 Ga0209050_1010079 Ga0209050_10100792 365
66 3300048918 Ga0496115_0264877 Ga0496115_0264877_78_1205 365
67 iso_pu_bacteria 2511231156 2511824059 365
68 iso_pu_bacteria 2643221650 2644282148 365
69 iso_pu_bacteria 2825651385 2825656984 365
70 iso_pu_bacteria 2931369376 2931374489 365
71 3300003771 Ga0055526_1000728 Ga0055526_100072813 366
72 3300003781 Ga0055536_1000547 Ga0055536_100054719 366
73 3300003791 Ga0055530_10001240 Ga0055530_100012405 366
74 3300003792 Ga0055540_1002173 Ga0055540_10021735 366
75 3300005288 Ga0065714_10002369 Ga0065714_100023696 366
76 3300005288 Ga0065714_10002786 Ga0065714_100027865 366
77 3300005288 Ga0065714_10064873 Ga0065714_100648735 366
78 3300005290 Ga0065712_10135070 Ga0065712_101350702 366
79 3300005293 Ga0065715_10141397 Ga0065715_101413972 366
80 3300009011 Ga0105251_10000955 Ga0105251_100009555 366
81 3300009011 Ga0105251_10002018 Ga0105251_100020185 366
82 3300009011 Ga0105251_10026629 Ga0105251_100266293 366
83 3300009036 Ga0105244_10000477 Ga0105244_1000047720 366
84 3300013102 Ga0157371_10001656 Ga0157371_100016567 366
85 3300013306 Ga0163162_10012666 Ga0163162_100126664 366
86 3300013308 Ga0157375_10003290 Ga0157375_100032904 366
87 3300014497 Ga0182008_10005343 Ga0182008_100053435 366
88 3300015262 Ga0182007_10000396 Ga0182007_1000039617 366
89 3300017792 Ga0163161_10000567 Ga0163161_100005676 366
90 3300025292 Ga0209676_1000222 Ga0209676_1000222117 366
91 3300025295 Ga0209564_1000350 Ga0209564_100035023 366
92 3300025298 Ga0209050_1001397 Ga0209050_100139711 366
93 3300025303 Ga0209051_1000487 Ga0209051_100048739 366
94 3300025728 Ga0207655_1002412 Ga0207655_100241216 366
95 3300025735 Ga0207713_1000955 Ga0207713_10009555 366
96 3300025735 Ga0207713_1001786 Ga0207713_10017869 366
97 3300038705 Ga0237819_00441 Ga0237819_00441_5402_6502 366
98 3300041405 Ga0439438_000232 Ga0439438_000232_11750_12850 366
99 3300041405 Ga0439438_018938 Ga0439438_018938_533_1633 366
100 3300041407 Ga0439447_005119 Ga0439447_005119_2458_3558 366
101 3300041407 Ga0439447_009495 Ga0439447_009495_133_1233 366
102 3300041411 Ga0439466_0000180 Ga0439466_0000180_11738_12838 366
103 3300042006 Ga0439432_000090 Ga0439432_000090_13436_14536 366
104 3300042006 Ga0439432_004709 Ga0439432_004709_1737_2837 366
105 3300042009 Ga0439451_000329 Ga0439451_000329_3209_4309 366
106 3300042010 Ga0439452_000817 Ga0439452_000817_2401_3501 366
107 3300042010 Ga0439452_008717 Ga0439452_008717_1240_2340 366
108 3300042016 Ga0439463_000052 Ga0439463_000052_12184_13284 366
109 3300042146 Ga0450907_000214 Ga0450907_000214_5888_6988 366
110 3300042185 Ga0450909_000161 Ga0450909_000161_1197_2297 366
111 3300042461 Ga0439460_0000021 Ga0439460_0000021_12312_13412 366
112 3300046455 Ga0495603_0061126 Ga0495603_0061126_231_1331 366
113 3300046512 Ga0495610_0000774 Ga0495610_0000774_13966_15066 366
114 3300046557 Ga0495622_0000309 Ga0495622_0000309_15638_16738 366
115 3300046674 Ga0495588_0000401 Ga0495588_0000401_871_1971 366
116 3300002737 JGI25162J39368_1000550 JGI25162J39368_10005505 367
117 3300002772 JGI25164J39214_1000269 JGI25164J39214_100026922 367
118 3300003214 JGI25165J46597_1000795 JGI25165J46597_100079519 367
119 3300005548 Ga0070665_100017632 Ga0070665_1000176328 367
120 3300006051 Ga0075364_10000772 Ga0075364_1000077213 367
121 3300009174 Ga0105241_10216094 Ga0105241_102160942 367
122 3300025231 Ga0207427_100235 Ga0207427_10023515 367
123 3300025233 Ga0209437_100223 Ga0209437_10022365 367
124 3300025261 Ga0209233_1000272 Ga0209233_100027239 367
125 3300025292 Ga0209676_1011610 Ga0209676_10116102 367
126 3300025913 Ga0207695_10026445 Ga0207695_100264454 367
127 3300028379 Ga0268266_10011407 Ga0268266_100114075 367
128 3300041405 Ga0439438_000360 Ga0439438_000360_12638_13741 367
129 3300041405 Ga0439438_002439 Ga0439438_002439_5573_6676 367
130 3300050491 nmdc:mga00v17_1521_c1 nmdc:mga00v17_1521_c1_381_1532 367
131 iso_pu_bacteria 2524614729 2525558123 367
132 iso_pu_bacteria 2627854209 2630649926 367
133 iso_pu_bacteria 2932422444 2932422875 367
134 3300005329 Ga0070683_100001907 Ga0070683_1000019076 368
135 3300005337 Ga0070682_100026717 Ga0070682_1000267173 368
136 3300005344 Ga0070661_100138239 Ga0070661_1001382391 368
137 3300005456 Ga0070678_100004175 Ga0070678_1000041754 368
138 3300005458 Ga0070681_10005422 Ga0070681_100054223 368
139 3300005530 Ga0070679_100008155 Ga0070679_1000081558 368
140 3300005547 Ga0070693_100017724 Ga0070693_1000177243 368
141 3300025294 Ga0209025_1007431 Ga0209025_10074315 368
142 3300025297 Ga0209758_1010953 Ga0209758_10109532 368
143 3300025912 Ga0207707_10057325 Ga0207707_100573253 368
144 3300025920 Ga0207649_10156328 Ga0207649_101563281 368
145 3300025921 Ga0207652_10019020 Ga0207652_100190202 368
146 3300025927 Ga0207687_10007561 Ga0207687_100075615 368
147 3300025944 Ga0207661_10006042 Ga0207661_100060423 368
148 3300026075 Ga0207708_10288734 Ga0207708_102887341 368
149 3300026078 Ga0207702_10006523 Ga0207702_100065232 368
150 3300026121 Ga0207683_10010206 Ga0207683_100102064 368
151 3300036401 Ga0373937_0086008 Ga0373937_0086008_915_2075 368
152 3300049568 Ga0501031_0052623 Ga0501031_0052623_1403_2542 368
153 3300054114 Ga0501084_0305323 Ga0501084_0305323_67_1206 368
154 2162886007 SwRhRL2b_contig_1903306 SwRhRL2b_0556.00002210 369
155 3300003792 Ga0055540_1000583 Ga0055540_100058310 369
156 3300005289 Ga0065704_10000243 Ga0065704_1000024315 369
157 3300005327 Ga0070658_10057759 Ga0070658_100577592 369
158 3300005331 Ga0070670_100000141 Ga0070670_1000001419 369
159 3300005353 Ga0070669_100196986 Ga0070669_1001969862 369
160 3300005354 Ga0070675_100068310 Ga0070675_1000683103 369
161 3300005457 Ga0070662_100052387 Ga0070662_1000523872 369
162 3300005518 Ga0070699_100020152 Ga0070699_1000201522 369
163 3300005536 Ga0070697_100000103 Ga0070697_10000010347 369
164 3300005548 Ga0070665_100046753 Ga0070665_1000467533 369
165 3300006881 Ga0068865_100010396 Ga0068865_1000103964 369
166 3300006946 Ga0079104_1000094 Ga0079104_100009457 369
167 3300010375 Ga0105239_10204225 Ga0105239_102042253 369
168 3300015261 Ga0182006_1048111 Ga0182006_10481111 369
169 3300021388 Ga0213875_10000052 Ga0213875_1000005272 369
170 3300025292 Ga0209676_1001773 Ga0209676_100177310 369
171 3300025298 Ga0209050_1001194 Ga0209050_100119414 369
172 3300025303 Ga0209051_1000870 Ga0209051_100087014 369
173 3300025304 Ga0209257_1006225 Ga0209257_10062257 369
174 3300025923 Ga0207681_10038014 Ga0207681_100380143 369
175 3300025925 Ga0207650_10000089 Ga0207650_1000008911 369
176 3300025926 Ga0207659_10114990 Ga0207659_101149902 369
177 3300025933 Ga0207706_10081029 Ga0207706_100810292 369
178 3300025938 Ga0207704_10005429 Ga0207704_100054293 369
179 3300025940 Ga0207691_10075789 Ga0207691_100757893 369
180 3300027111 Ga0209281_1000212 Ga0209281_100021275 369
181 3300028379 Ga0268266_10102784 Ga0268266_101027842 369
182 3300031911 Ga0307412_10000459 Ga0307412_1000045915 369
183 3300031995 Ga0307409_100044960 Ga0307409_1000449602 369
184 3300032004 Ga0307414_10063783 Ga0307414_100637832 369
185 3300037853 Ga0436364_0085187 Ga0436364_0085187_148909_150147 369
186 3300038725 Ga0400484_32216 Ga0400484_32216_2217_3341 369
187 3300045051 Ga0451576_0105568 Ga0451576_0105568_694_1863 369

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02350

Epimerase_2

UDP-N-acetylglucosamine 2-epimerase

49

393

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
7vza-assembly1.cif.gz_D-3 the crystal structure of non-hydrolyzing udpglcnac 2-epimerase in complex with udp 0.9677 1 369
6vlc-assembly1.cif.gz_A crystal structure of udp-glcnac 2-epimerase from neisseria meningitidis bound to udp-glcnac 0.9675 4 363
7vz6-assembly1.cif.gz_B the crystal structure of non-hydrolyzing udpglcnac 2-epimerase in complex with udp-glucose 0.9668 1 369
7vza-assembly1.cif.gz_C-2 the crystal structure of non-hydrolyzing udpglcnac 2-epimerase in complex with udp 0.9659 1 369
7vz6-assembly1.cif.gz_A the crystal structure of non-hydrolyzing udpglcnac 2-epimerase in complex with udp-glucose 0.9646 1 369
ID Description Score Start End Superfamily
5enzB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9901 2 180 3.40.50.2000
af_P27828_2_186_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9879 5 184 3.40.50.2000
1v4vB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9629 3 184 3.40.50.2000
af_P27828_3_337_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.9594 6 328 3.90.180.10
af_Q2G1J3_4_329_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9571 6 328 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A382N537-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) (EC 5.1.3.14) 0.9947 38 184 GO:0008761
AF-A0A448QXJ3-F1-model_v4 deleted 0.9943 200 325
AF-M5TT11-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) (EC 5.1.3.14) 0.9934 1 151 GO:0008761
AF-A0A351J761-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) (EC 5.1.3.14) 0.9915 1 181 GO:0008761
AF-X1D2Q5-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) (EC 5.1.3.14) 0.9898 1 115 GO:0008761

Feature Viewer

pLDDT pTM Quality
94.44 0.91 High
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Predicted Structure (AlphaFold2)

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