F287655

General Info

Members Datasets Scaffolds Average Seq Length
187 143 374 265

Family's Representative Sequence

Representative Sequence 3300013105|Ga0157369_10025404|Ga0157369_100254046
Length 306
Sequence LIGSVERETPVPIIDQASLWQFIPPHISLPRGKHMVLPAYIGALDGKRQRETALITGASSGIGLDLAQLMAPNFDLIITARNQPQLEKIAQELQAAHGNHVHVVPADLTLPEPPQQIFAEIERRGLPVDILINNAGFGLYGAFAESDPRTSLNMVQVNIAALTALTRLALPGMIQRKRGKIMNVASTAGFQPGPLMAVYYATKAYVIMFSEAIANELKGSGVTVTCFCPGATVTHFAERANMEESRLFKLGAMNSKDVALAGYNGMMAGKGLVIPGVLNKTLAISVRFSPRKLVTAISRSLQEKAK

Samples

Sample ID Description Type Environment
1 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
18 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
27 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
28 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
29 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
30 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
31 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
34 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
35 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
36 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
37 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
38 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
39 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
41 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
42 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
43 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
44 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
45 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
47 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
48 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
53 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
56 3300022730 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU2 Metagenome Rhizosphere
57 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
58 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
84 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
85 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
86 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
87 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
88 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
89 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
90 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
91 3300033547 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 Metagenome Unclassified
92 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
93 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
94 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
95 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
96 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
97 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
98 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
99 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
100 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
101 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
102 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
103 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
104 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
105 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
106 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
107 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
108 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
109 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
110 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
111 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
112 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
113 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
114 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
115 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
116 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
117 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
118 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
119 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
120 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
121 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
122 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
123 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
128 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
129 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
130 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
131 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
132 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
133 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
135 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
136 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
137 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
138 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
139 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
140 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
141 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
142 2524614857 Deinococcus ficus DSM 19119 Isolate Rhizosphere
143 2739367875 Deinococcus ficus CC-FR2-10 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.79
Metatranscriptomes 2.14
Isolates 1.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.21
Nodule 0
Rhizoplane 3.21
Rhizosphere 92.51
Stem 0
Stem Tuber 0
Unclassified 11.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157369_10025404 3300013105 Bacteria 6577
2 MBSR1b_contig_6921460 2162886012 Bacteria 1885
3 Ga0065712_10103681 3300005290 Bacteria 1965
4 Ga0065712_10141276 3300005290 Bacteria 1448
5 Ga0065715_10091250 3300005293 Bacteria 5955
6 Ga0065715_10105036 3300005293 Bacteria 2919
7 Ga0065715_10122470 3300005293 Bacteria 2204
8 Ga0065707_10001614 3300005295 Bacteria 7708
9 Ga0065707_10099434 3300005295 Bacteria 2993
10 Ga0070658_10001787 3300005327 Bacteria 18098
11 Ga0070683_100062454 3300005329 Bacteria 3464
12 Ga0070677_10094533 3300005333 Bacteria 1306
13 Ga0070660_100048643 3300005339 Bacteria 3257
14 Ga0070689_100261151 3300005340 Bacteria 1431
15 Ga0070669_100146870 3300005353 Unclassified 1823
16 Ga0070675_100255663 3300005354 Bacteria 1534
17 Ga0070671_100272412 3300005355 Bacteria 1439
18 Ga0070674_100309620 3300005356 Unclassified 1262
19 Ga0070674_100432280 3300005356 Unclassified 1083
20 Ga0070673_100340989 3300005364 Bacteria 1328
21 Ga0070688_100035281 3300005365 Bacteria 3038
22 Ga0070713_100051838 3300005436 Bacteria 3395
23 Ga0070713_100124750 3300005436 Unclassified 2263
24 Ga0070713_100131008 3300005436 Unclassified 2211
25 Ga0070713_100241923 3300005436 Bacteria 1644
26 Ga0070708_100001060 3300005445 Bacteria 20977
27 Ga0070708_100250412 3300005445 Bacteria 1664
28 Ga0070708_100577927 3300005445 Bacteria 1059
29 Ga0070681_10011216 3300005458 Bacteria 8862
30 Ga0070681_10197640 3300005458 Bacteria 1929
31 Ga0070681_10272996 3300005458 Bacteria 1602
32 Ga0070706_100088116 3300005467 Bacteria 2878
33 Ga0070706_100280089 3300005467 Bacteria 1556
34 Ga0070698_100148095 3300005471 Bacteria 2296
35 Ga0070699_100424412 3300005518 Bacteria 1204
36 Ga0070679_100008083 3300005530 Bacteria 9889
37 Ga0070679_100291193 3300005530 Bacteria 1584
38 Ga0070684_100018363 3300005535 Bacteria 5761
39 Ga0070684_100066579 3300005535 Unclassified 3162
40 Ga0068853_100072988 3300005539 Unclassified 2991
41 Ga0068853_100147946 3300005539 Unclassified 2112
42 Ga0070696_100117595 3300005546 Bacteria 1921
43 Ga0070693_100007365 3300005547 Bacteria 5377
44 Ga0070704_100043583 3300005549 Bacteria 3111
45 Ga0068855_100066422 3300005563 Bacteria 4205
46 Ga0068854_100049709 3300005578 Archaea 2997
47 Ga0068852_100063241 3300005616 Unclassified 3222
48 Ga0068859_100013865 3300005617 Bacteria 8082
49 Ga0068870_10243994 3300005840 Bacteria 1110
50 Ga0068862_100025237 3300005844 Bacteria 4989
51 Ga0070717_10145923 3300006028 Bacteria 2044
52 Ga0070717_10294658 3300006028 Bacteria 1441
53 Ga0070717_10398930 3300006028 Bacteria 1235
54 Ga0070712_100000735 3300006175 Bacteria 19334
55 Ga0075367_10100071 3300006178 Bacteria 1771
56 Ga0075367_10130496 3300006178 Unclassified 1553
57 Ga0075366_10087684 3300006195 Bacteria 1863
58 Ga0097621_100290187 3300006237 Unclassified 1442
59 Ga0068871_100506867 3300006358 Bacteria 1088
60 Ga0075428_100000004 3300006844 Bacteria 326694
61 Ga0075430_100071005 3300006846 Bacteria 2921
62 Ga0075431_100085826 3300006847 Bacteria 3249
63 Ga0075433_10025787 3300006852 Bacteria 4971
64 Ga0097620_100013864 3300006931 Bacteria 8082
65 Ga0099794_10002136 3300007265 Bacteria 7187
66 Ga0105240_10047585 3300009093 Bacteria 5426
67 Ga0105240_10663584 3300009093 Unclassified 1142
68 Ga0111539_10000005 3300009094 Bacteria 467342
69 Ga0105245_10006711 3300009098 Bacteria 10095
70 Ga0105238_10035789 3300009551 Bacteria 5047
71 Ga0105249_10014612 3300009553 Bacteria 6942
72 Ga0157373_10171349 3300013100 Bacteria 1527
73 Ga0157369_10004417 3300013105 Bacteria 16596
74 Ga0157369_10029963 3300013105 Bacteria 6006
75 Ga0157369_10052970 3300013105 Bacteria 4388
76 Ga0157374_10052231 3300013296 Bacteria 3805
77 Ga0157374_10161533 3300013296 Bacteria 2182
78 Ga0157372_10233456 3300013307 Bacteria 2133
79 Ga0157380_10042014 3300014326 Bacteria 3572
80 Ga0157380_10216401 3300014326 Bacteria 1711
81 Ga0157380_11005966 3300014326 Bacteria 867
82 Ga0224570_100537 3300022730 Archaea 2987
83 Ga0228598_1001970 3300024227 Bacteria 4481
84 Ga0228598_1002840 3300024227 Bacteria 3757
85 Ga0207685_10114295 3300025905 Bacteria 1175
86 Ga0207643_10226395 3300025908 Bacteria 1146
87 Ga0207705_10000514 3300025909 Bacteria 33010
88 Ga0207705_10031235 3300025909 Bacteria 3800
89 Ga0207684_10156746 3300025910 Bacteria 1960
90 Ga0207695_10081044 3300025913 Bacteria 3286
91 Ga0207695_10478767 3300025913 Unclassified 1127
92 Ga0207693_10140821 3300025915 Bacteria 1897
93 Ga0207693_10453546 3300025915 Bacteria 1002
94 Ga0207663_10004283 3300025916 Bacteria 7083
95 Ga0207660_10171928 3300025917 Bacteria 1678
96 Ga0207657_10060239 3300025919 Bacteria 3258
97 Ga0207681_10120191 3300025923 Bacteria 1926
98 Ga0207681_10144059 3300025923 Bacteria 1778
99 Ga0207694_10033794 3300025924 Bacteria 3918
100 Ga0207694_10086185 3300025924 Bacteria 2473
101 Ga0207650_10095277 3300025925 Bacteria 2282
102 Ga0207659_10029405 3300025926 Bacteria 3745
103 Ga0207700_10015615 3300025928 Bacteria 5016
104 Ga0207700_10053327 3300025928 Bacteria 3029
105 Ga0207700_10065440 3300025928 Bacteria 2773
106 Ga0207700_10368516 3300025928 Bacteria 1254
107 Ga0207644_10303698 3300025931 Bacteria 1287
108 Ga0207670_10417837 3300025936 Unclassified 1075
109 Ga0207669_10018584 3300025937 Bacteria 3598
110 Ga0207691_10075611 3300025940 Bacteria 3037
111 Ga0207667_10229925 3300025949 Bacteria 1899
112 Ga0207712_10271453 3300025961 Bacteria 1380
113 Ga0207640_10695099 3300025981 Archaea 871
114 Ga0207639_10081071 3300026041 Unclassified 2569
115 Ga0207639_10227935 3300026041 Unclassified 1613
116 Ga0207708_10138813 3300026075 Unclassified 1905
117 Ga0207698_10068860 3300026142 Bacteria 2796
118 Ga0209588_1000017 3300027671 Bacteria 97342
119 Ga0207428_10000024 3300027907 Bacteria 265587
120 Ga0265356_1000081 3300028017 Bacteria 15966
121 Ga0265323_10001102 3300028653 Bacteria 13950
122 Ga0265762_1000458 3300030760 Archaea 7060
123 Ga0265762_1005405 3300030760 Unclassified 2290
124 Ga0265760_10000107 3300031090 Bacteria 21014
125 Ga0265760_10001130 3300031090 Bacteria 7763
126 Ga0265339_10110126 3300031249 Bacteria 1425
127 Ga0265314_10020307 3300031711 Bacteria 5128
128 Ga0307413_10063368 3300031824 Bacteria 2292
129 Ga0316212_1001557 3300033547 Bacteria 3141
130 Ga0373923_0045838 3300035111 Bacteria 1816
131 Ga0373936_0059487 3300035113 Bacteria 1557
132 Ga0373945_0001311 3300035116 Bacteria 7546
133 Ga0373924_0000246 3300035410 Bacteria 16565
134 Ga0373935_0071958 3300035692 Bacteria 2231
135 Ga0373927_0353405 3300035695 Unclassified 968
136 Ga0373933_0021243 3300035724 Bacteria 3686
137 Ga0373947_0033919 3300035725 Bacteria 3017
138 Ga0373937_0006440 3300036401 Bacteria 10131
139 Ga0373937_0059007 3300036401 Bacteria 3526
140 Ga0373925_0113737 3300037068 Bacteria 2093
141 Ga0373925_0272537 3300037068 Bacteria 1361
142 Ga0466961_0201973 3300044693 Bacteria 1229
143 Ga0466957_0000590 3300044842 Bacteria 18425
144 Ga0466960_0075308 3300044901 Bacteria 1688
145 Ga0466958_0033435 3300045836 Bacteria 3063
146 Ga0495651_0027755 3300046462 Bacteria 4412
147 Ga0495651_0069468 3300046462 Bacteria 2683
148 Ga0495582_0117677 3300046473 Bacteria 1495
149 Ga0495630_0141658 3300046517 Bacteria 1828
150 Ga0495665_0018846 3300046531 Bacteria 3708
151 Ga0495667_0069468 3300046559 Bacteria 2299
152 Ga0495635_0253029 3300046663 Bacteria 1187
153 Ga0495623_0035002 3300046679 Bacteria 3219
154 Ga0495647_0184108 3300046681 Bacteria 910
155 Ga0495674_0219765 3300047319 Bacteria 1571
156 Ga0495680_0240523 3300047322 Bacteria 1286
157 Ga0495593_0053663 3300047673 Bacteria 2127
158 Ga0496102_0220733 3300048905 Bacteria 1787
159 Ga0496103_0149266 3300048906 Bacteria 1497
160 Ga0496105_0006282 3300048908 Bacteria 9125
161 Ga0496106_0274681 3300048909 Unclassified 1350
162 Ga0496111_0000580 3300048914 Bacteria 19154
163 Ga0496112_0023421 3300048915 Bacteria 5899
164 Ga0501038_0204675 3300049574 Unclassified 1582
165 Ga0501039_0135820 3300049575 Bacteria 1931
166 Ga0501042_0051595 3300049578 Bacteria 2934
167 Ga0501048_0069363 3300049582 Bacteria 2490
168 Ga0501072_0351965 3300049588 Unclassified 1169
169 Ga0501075_0035478 3300049591 Bacteria 3720
170 Ga0501076_0029150 3300049592 Bacteria 4291
171 Ga0501076_0116110 3300049592 Bacteria 2166
172 Ga0501077_0102529 3300049593 Bacteria 1813
173 Ga0501079_0213160 3300049741 Bacteria 1509
174 Ga0501081_0038729 3300049743 Bacteria 3259
175 Ga0501044_0774673 3300049823 Bacteria 840
176 Ga0501045_0017270 3300049824 Bacteria 5122
177 Ga0501045_0155103 3300049824 Bacteria 1704
178 nmdc:mga0k408_102217_c1 3300050493 Bacteria 1690
179 nmdc:mga06z11_128094_c1 3300050494 Bacteria 1422
180 nmdc:mga06z11_82230_c1 3300050494 Bacteria 1730
181 nmdc:mga09592_202301_c1 3300050508 Bacteria 1720
182 nmdc:mga06r32_71902_c1 3300050510 Bacteria 3348
183 nmdc:mga08y16_6_c1 3300050511 Bacteria 622294
184 nmdc:mga0a205_8232_c1 3300050515 Bacteria 9478
185 Ga0530510_0121171 3300061734 Bacteria 1920
186 2526063252 2524614857 Bacteria 4146328
187 2740064621 2739367875 Bacteria 4157290
188 Ga0157369_10025404
189 MBSR1b_contig_6921460
190 Ga0065712_10103681
191 Ga0065712_10141276
192 Ga0065715_10091250
193 Ga0065715_10105036
194 Ga0065715_10122470
195 Ga0065707_10001614
196 Ga0065707_10099434
197 Ga0070658_10001787
198 Ga0070683_100062454
199 Ga0070677_10094533
200 Ga0070660_100048643
201 Ga0070689_100261151
202 Ga0070669_100146870
203 Ga0070675_100255663
204 Ga0070671_100272412
205 Ga0070674_100309620
206 Ga0070674_100432280
207 Ga0070673_100340989
208 Ga0070688_100035281
209 Ga0070713_100051838
210 Ga0070713_100124750
211 Ga0070713_100131008
212 Ga0070713_100241923
213 Ga0070708_100001060
214 Ga0070708_100250412
215 Ga0070708_100577927
216 Ga0070681_10011216
217 Ga0070681_10197640
218 Ga0070681_10272996
219 Ga0070706_100088116
220 Ga0070706_100280089
221 Ga0070698_100148095
222 Ga0070699_100424412
223 Ga0070679_100008083
224 Ga0070679_100291193
225 Ga0070684_100018363
226 Ga0070684_100066579
227 Ga0068853_100072988
228 Ga0068853_100147946
229 Ga0070696_100117595
230 Ga0070693_100007365
231 Ga0070704_100043583
232 Ga0068855_100066422
233 Ga0068854_100049709
234 Ga0068852_100063241
235 Ga0068859_100013865
236 Ga0068870_10243994
237 Ga0068862_100025237
238 Ga0070717_10145923
239 Ga0070717_10294658
240 Ga0070717_10398930
241 Ga0070712_100000735
242 Ga0075367_10100071
243 Ga0075367_10130496
244 Ga0075366_10087684
245 Ga0097621_100290187
246 Ga0068871_100506867
247 Ga0075428_100000004
248 Ga0075430_100071005
249 Ga0075431_100085826
250 Ga0075433_10025787
251 Ga0097620_100013864
252 Ga0099794_10002136
253 Ga0105240_10047585
254 Ga0105240_10663584
255 Ga0111539_10000005
256 Ga0105245_10006711
257 Ga0105238_10035789
258 Ga0105249_10014612
259 Ga0157373_10171349
260 Ga0157369_10004417
261 Ga0157369_10029963
262 Ga0157369_10052970
263 Ga0157374_10052231
264 Ga0157374_10161533
265 Ga0157372_10233456
266 Ga0157380_10042014
267 Ga0157380_10216401
268 Ga0157380_11005966
269 Ga0224570_100537
270 Ga0228598_1001970
271 Ga0228598_1002840
272 Ga0207685_10114295
273 Ga0207643_10226395
274 Ga0207705_10000514
275 Ga0207705_10031235
276 Ga0207684_10156746
277 Ga0207695_10081044
278 Ga0207695_10478767
279 Ga0207693_10140821
280 Ga0207693_10453546
281 Ga0207663_10004283
282 Ga0207660_10171928
283 Ga0207657_10060239
284 Ga0207681_10120191
285 Ga0207681_10144059
286 Ga0207694_10033794
287 Ga0207694_10086185
288 Ga0207650_10095277
289 Ga0207659_10029405
290 Ga0207700_10015615
291 Ga0207700_10053327
292 Ga0207700_10065440
293 Ga0207700_10368516
294 Ga0207644_10303698
295 Ga0207670_10417837
296 Ga0207669_10018584
297 Ga0207691_10075611
298 Ga0207667_10229925
299 Ga0207712_10271453
300 Ga0207640_10695099
301 Ga0207639_10081071
302 Ga0207639_10227935
303 Ga0207708_10138813
304 Ga0207698_10068860
305 Ga0209588_1000017
306 Ga0207428_10000024
307 Ga0265356_1000081
308 Ga0265323_10001102
309 Ga0265762_1000458
310 Ga0265762_1005405
311 Ga0265760_10000107
312 Ga0265760_10001130
313 Ga0265339_10110126
314 Ga0265314_10020307
315 Ga0307413_10063368
316 Ga0316212_1001557
317 Ga0373923_0045838
318 Ga0373936_0059487
319 Ga0373945_0001311
320 Ga0373924_0000246
321 Ga0373935_0071958
322 Ga0373927_0353405
323 Ga0373933_0021243
324 Ga0373947_0033919
325 Ga0373937_0006440
326 Ga0373937_0059007
327 Ga0373925_0113737
328 Ga0373925_0272537
329 Ga0466961_0201973
330 Ga0466957_0000590
331 Ga0466960_0075308
332 Ga0466958_0033435
333 Ga0495651_0027755
334 Ga0495651_0069468
335 Ga0495582_0117677
336 Ga0495630_0141658
337 Ga0495665_0018846
338 Ga0495667_0069468
339 Ga0495635_0253029
340 Ga0495623_0035002
341 Ga0495647_0184108
342 Ga0495674_0219765
343 Ga0495680_0240523
344 Ga0495593_0053663
345 Ga0496102_0220733
346 Ga0496103_0149266
347 Ga0496105_0006282
348 Ga0496106_0274681
349 Ga0496111_0000580
350 Ga0496112_0023421
351 Ga0501038_0204675
352 Ga0501039_0135820
353 Ga0501042_0051595
354 Ga0501048_0069363
355 Ga0501072_0351965
356 Ga0501075_0035478
357 Ga0501076_0029150
358 Ga0501076_0116110
359 Ga0501077_0102529
360 Ga0501079_0213160
361 Ga0501081_0038729
362 Ga0501044_0774673
363 Ga0501045_0017270
364 Ga0501045_0155103
365 nmdc:mga0k408_102217_c1
366 nmdc:mga06z11_128094_c1
367 nmdc:mga06z11_82230_c1
368 nmdc:mga09592_202301_c1
369 nmdc:mga06r32_71902_c1
370 nmdc:mga08y16_6_c1
371 nmdc:mga0a205_8232_c1
372 Ga0530510_0121171
373 2526063252
374 2740064621

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

51

245

0.97

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

57

273

0.93

PF08659

KR

KR domain

51

232

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7e28-assembly1.cif.gz_B crystal structure of sdr family nad(p)-dependent oxidoreductase from exiguobacterium 0.9308 4 230
5gws-assembly1.cif.gz_C 4-hydroxyisoleucine dehydrogenase complexed with nadh and succinate 0.9304 6 185
8g93-assembly1.cif.gz_A crystal structures of 17-beta-hydroxysteroid dehydrogenase 13 0.9302 3 239
8g9v-assembly2.cif.gz_C crystal structures of 17-beta-hydroxysteroid dehydrogenase 13 0.9297 4 239
8g93-assembly1.cif.gz_B crystal structures of 17-beta-hydroxysteroid dehydrogenase 13 0.9285 3 244
ID Description Score Start End Superfamily
af_A0A0R0HUJ2_8_65_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9906 4 54 3.40.50.720
af_Q10782_3_250_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9556 3 246 3.40.50.720
af_F4J128_251_373_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.942 90 187 3.40.50.720
af_A0A368UI72_22_109_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.933 4 74 3.40.50.720
af_Q8SX47_51_284_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9295 4 233 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2V5R6I0-F1-model_v4 Short-chain dehydrogenase 0.9841 3 255 GO:0016020
GO:0016491
AF-A0A3M1DLQ8-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9791 1 160 GO:0016020
GO:0016491
AF-A0A1Y1SB45-F1-model_v4 Putative oxidoreductase 0.9778 4 262 GO:0016020
GO:0016491
AF-A0A0P8XW79-F1-model_v4 Short chain dehydrogenase family protein 0.9775 3 256 GO:0016020
GO:0016491
AF-A0A7Z1Y790-F1-model_v4 deleted 0.9761 3 256

Map