F287556

General Info

Members Datasets Scaffolds Average Seq Length
187 141 374 220

Family's Representative Sequence

Representative Sequence 3300009094|Ga0111539_10016440|Ga0111539_100164406
Length 245
Sequence VSARFERASIDNPRESQRQHPSVNTNPGIIGKKLGMTQLFSEDGTVVRCSVIESDLTVIGKRTKEQNGYDALIVGLGERKEKQTNKPLAGQYKKSGQTPKRFVRELRLDAEIVAKYEVGGKVKLDEVFELGQFVDVQGKTRGRGFTGVMRRWSFAGAVTTHGTHEYKRHGGSIGTNMTPGRTLPGLKMPGHYGDETVSVLNLKVAKIMPEESLLLVEGGVPGPRNSVVVVRGAVKKRGGKPKPAK

Samples

Sample ID Description Type Environment
1 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300003163 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
15 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
29 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
46 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
68 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
69 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
70 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
71 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
72 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
73 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
74 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
75 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
76 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
77 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
78 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
79 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
80 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
81 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
82 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
83 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
84 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
85 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
86 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
87 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
90 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
91 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
92 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
93 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
94 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
95 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
96 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
97 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
98 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
99 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
100 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
101 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
102 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
103 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
104 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
105 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
106 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
107 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
108 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
109 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
110 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
111 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
112 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
113 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
114 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
115 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
121 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
122 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
123 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
124 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
125 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
126 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
127 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
128 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
129 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
130 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
131 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
132 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
135 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
136 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
137 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
138 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
139 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
140 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
141 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.4
Metatranscriptomes 1.6
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.67
Nodule 0
Rhizoplane 3.74
Rhizosphere 85.56
Stem 0
Stem Tuber 0
Unclassified 8.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0111539_10016440 3300009094 Bacteria 9174
2 JGI24736J21556_1024147 3300001904 Bacteria 949
3 Ga0006759J45824_1058026 3300003163 Unclassified 857
4 rootH2_10031343 3300003320 Bacteria 48313
5 rootH1_10031022 3300003323 Bacteria 8758
6 JGI25404J52841_10004403 3300003659 Bacteria 2851
7 Ga0070658_10183604 3300005327 Bacteria 1761
8 Ga0070658_10476189 3300005327 Bacteria 1077
9 Ga0070683_100084097 3300005329 Bacteria 2981
10 Ga0070682_100064808 3300005337 Unclassified 2320
11 Ga0068868_100012318 3300005338 Bacteria 6250
12 Ga0070689_100001626 3300005340 Bacteria 14356
13 Ga0070692_10456347 3300005345 Unclassified 819
14 Ga0070667_100356447 3300005367 Unclassified 1325
15 Ga0070705_100125977 3300005440 Bacteria 1662
16 Ga0070663_100431667 3300005455 Bacteria 1082
17 Ga0070678_100004015 3300005456 Bacteria 8282
18 Ga0070678_100300054 3300005456 Bacteria 1365
19 Ga0068867_100018488 3300005459 Bacteria 4955
20 Ga0068867_100632435 3300005459 Bacteria 937
21 Ga0070707_100448945 3300005468 Bacteria 1250
22 Ga0070684_100455239 3300005535 Bacteria 1183
23 Ga0070672_100000267 3300005543 Bacteria 29530
24 Ga0068855_100000076 3300005563 Bacteria 118910
25 Ga0068855_100004916 3300005563 Bacteria 16313
26 Ga0068856_100139618 3300005614 Bacteria 2430
27 Ga0068856_100293763 3300005614 Bacteria 1642
28 Ga0068852_100517883 3300005616 Bacteria 1190
29 Ga0068859_100131146 3300005617 Bacteria 2578
30 Ga0068863_100091809 3300005841 Bacteria 2880
31 Ga0068863_100452118 3300005841 Bacteria 1261
32 Ga0068863_100890873 3300005841 Bacteria 890
33 Ga0081455_10013061 3300005937 Bacteria 8231
34 Ga0081455_10084575 3300005937 Bacteria 2589
35 Ga0081539_10023831 3300005985 Bacteria 3993
36 Ga0075366_10079450 3300006195 Bacteria 1958
37 Ga0097621_100032389 3300006237 Bacteria 4154
38 Ga0097621_100648285 3300006237 Bacteria 969
39 Ga0097621_100721208 3300006237 Bacteria 919
40 Ga0068871_100431920 3300006358 Bacteria 1178
41 Ga0075428_100554966 3300006844 Bacteria 1228
42 Ga0075430_100055563 3300006846 Bacteria 3329
43 Ga0075429_100246239 3300006880 Bacteria 1565
44 Ga0068865_100040830 3300006881 Bacteria 3155
45 Ga0097620_100131145 3300006931 Bacteria 2578
46 Ga0075435_100004571 3300007076 Bacteria 9524
47 Ga0111539_10041467 3300009094 Bacteria 5534
48 Ga0111539_10614845 3300009094 Bacteria 1265
49 Ga0111539_10671010 3300009094 Bacteria 1207
50 Ga0111539_10985675 3300009094 Bacteria 980
51 Ga0111539_11477650 3300009094 Bacteria 788
52 Ga0105245_10009979 3300009098 Bacteria 8271
53 Ga0105247_10000345 3300009101 Bacteria 40650
54 Ga0105241_10064321 3300009174 Bacteria 2831
55 Ga0105237_10681605 3300009545 Bacteria 1035
56 Ga0105249_10446914 3300009553 Bacteria 1331
57 Ga0157374_10169838 3300013296 Bacteria 2127
58 Ga0157374_10509053 3300013296 Bacteria 1209
59 Ga0157378_10369613 3300013297 Bacteria 1406
60 Ga0163163_10052541 3300014325 Bacteria 4020
61 Ga0163163_10617506 3300014325 Bacteria 1147
62 Ga0157380_10280821 3300014326 Bacteria 1523
63 Ga0182008_10338061 3300014497 Bacteria 796
64 Ga0157376_10066959 3300014969 Bacteria 3037
65 Ga0157376_10180449 3300014969 Bacteria 1929
66 Ga0157376_10399193 3300014969 Bacteria 1329
67 Ga0163161_10177159 3300017792 Bacteria 1633
68 Ga0163161_10915244 3300017792 Bacteria 744
69 Ga0207643_10369364 3300025908 Unclassified 903
70 Ga0207705_10522387 3300025909 Bacteria 922
71 Ga0207654_10084122 3300025911 Bacteria 1923
72 Ga0207659_10099265 3300025926 Unclassified 2192
73 Ga0207687_10002097 3300025927 Bacteria 13623
74 Ga0207670_10053431 3300025936 Bacteria 2721
75 Ga0207704_10128181 3300025938 Bacteria 1751
76 Ga0207691_10000386 3300025940 Bacteria 44174
77 Ga0207691_10188929 3300025940 Bacteria 1797
78 Ga0207667_10004847 3300025949 Bacteria 16448
79 Ga0207667_10389026 3300025949 Unclassified 1420
80 Ga0207668_10428808 3300025972 Bacteria 1124
81 Ga0207677_10075166 3300026023 Bacteria 2400
82 Ga0207678_10019119 3300026067 Bacteria 6014
83 Ga0207678_10202768 3300026067 Bacteria 1696
84 Ga0207708_10258054 3300026075 Bacteria 1406
85 Ga0207708_10598185 3300026075 Bacteria 934
86 Ga0207702_10061686 3300026078 Bacteria 3199
87 Ga0207641_10090999 3300026088 Bacteria 2669
88 Ga0207641_10531405 3300026088 Bacteria 1145
89 Ga0207648_10044816 3300026089 Bacteria 3881
90 Ga0207675_100050725 3300026118 Unclassified 3872
91 Ga0207683_10055276 3300026121 Bacteria 3481
92 Ga0207683_10167664 3300026121 Bacteria 1988
93 Ga0307509_10412535 3300031507 Unclassified 1054
94 Ga0307508_10002449 3300031616 Bacteria 19567
95 Ga0316575_10053153 3300031665 Bacteria 1613
96 Ga0316576_10003019 3300031727 Bacteria 9778
97 Ga0316576_10016496 3300031727 Unclassified 4991
98 Ga0316578_10088343 3300031728 Bacteria 1849
99 Ga0307516_10003830 3300031730 Bacteria 19054
100 Ga0307406_10038897 3300031901 Bacteria 2947
101 Ga0307412_10313877 3300031911 Bacteria 1244
102 Ga0307409_100049234 3300031995 Bacteria 3212
103 Ga0307409_100708217 3300031995 Bacteria 1007
104 Ga0307415_100221580 3300032126 Bacteria 1517
105 Ga0307507_10375690 3300033179 Bacteria 821
106 Ga0373939_0072641 3300035114 Bacteria 1124
107 Ga0373941_0192011 3300035115 Bacteria 772
108 Ga0373954_0260056 3300035118 Bacteria 855
109 Ga0373955_0442954 3300035172 Bacteria 791
110 Ga0373955_0458773 3300035172 Bacteria 777
111 Ga0373931_0074378 3300035691 Bacteria 1861
112 Ga0373931_0098358 3300035691 Bacteria 1642
113 Ga0373933_0175488 3300035724 Bacteria 1365
114 Ga0373937_0054934 3300036401 Bacteria 3655
115 Ga0373937_0058195 3300036401 Bacteria 3551
116 Ga0316582_0119290 3300036647 Unclassified 1764
117 Ga0316584_0024539 3300036712 Bacteria 4414
118 Ga0373925_0009672 3300037068 Bacteria 7015
119 Ga0395905_0051390 3300037471 Bacteria 3861
120 Ga0395905_0485025 3300037471 Bacteria 1136
121 Ga0436360_0836985 3300039438 Bacteria 1602
122 Ga0439465_0150113 3300041413 Bacteria 832
123 Ga0451789_0157626 3300041443 Bacteria 1023
124 Ga0451791_0467385 3300041451 Bacteria 2266
125 Ga0451797_1104518 3300041453 Bacteria 1198
126 Ga0451798_0930030 3300041458 Bacteria 928
127 Ga0451800_0200223 3300041459 Bacteria 1224
128 Ga0451807_1073199 3300041486 Bacteria 1975
129 Ga0451807_2108797 3300041486 Bacteria 3226
130 Ga0451837_0426527 3300041494 Bacteria 1404
131 Ga0451837_0506261 3300041494 Bacteria 1418
132 Ga0451837_0877349 3300041494 Bacteria 1194
133 Ga0451841_0800885 3300041498 Bacteria 2530
134 Ga0451849_0047154 3300041505 Bacteria 3710
135 Ga0451851_0262192 3300041507 Bacteria 1880
136 Ga0451853_1477283 3300041512 Bacteria 7502
137 Ga0451853_3308082 3300041512 Bacteria 850
138 Ga0439445_0128022 3300042004 Unclassified 732
139 Ga0451577_0347782 3300042876 Bacteria 1345
140 Ga0453683_0029315 3300044673 Bacteria 3480
141 Ga0466960_0020068 3300044901 Bacteria 2955
142 Ga0451576_0907630 3300045051 Unclassified 924
143 Ga0466967_0948650 3300045976 Bacteria 856
144 Ga0495645_0503941 3300046543 Bacteria 756
145 Ga0495589_0157005 3300046794 Unclassified 1084
146 Ga0495600_0321358 3300046809 Bacteria 973
147 Ga0495581_0240677 3300047315 Bacteria 1058
148 Ga0495684_0481638 3300047471 Unclassified 857
149 Ga0496122_0276885 3300048925 Bacteria 920
150 Ga0501311_024946 3300049527 Bacteria 835
151 Ga0501034_0016831 3300049571 Bacteria 7497
152 Ga0501038_0014805 3300049574 Bacteria 7104
153 Ga0501039_0462644 3300049575 Bacteria 996
154 Ga0501043_0065595 3300049579 Bacteria 2851
155 Ga0501047_0023093 3300049581 Bacteria 5970
156 Ga0501047_0064596 3300049581 Bacteria 3530
157 Ga0501047_0141323 3300049581 Bacteria 2286
158 Ga0501067_0000412 3300049583 Bacteria 23310
159 Ga0501067_0017118 3300049583 Bacteria 4005
160 Ga0501067_0170312 3300049583 Bacteria 1213
161 Ga0501068_0000277 3300049584 Bacteria 25402
162 Ga0501069_0000578 3300049585 Bacteria 16960
163 Ga0501072_0000005 3300049588 Bacteria 263381
164 Ga0501073_0001700 3300049589 Bacteria 16314
165 Ga0501074_0000391 3300049590 Bacteria 26033
166 Ga0501074_0030675 3300049590 Bacteria 3896
167 Ga0501074_0454732 3300049590 Bacteria 908
168 Ga0501077_0031977 3300049593 Bacteria 3348
169 Ga0501079_0009374 3300049741 Bacteria 7418
170 Ga0501080_0414128 3300049742 Bacteria 1211
171 Ga0501083_0374292 3300049744 Bacteria 926
172 Ga0501035_0086180 3300049822 Bacteria 2768
173 nmdc:mga0k408_205585_c1 3300050493 Bacteria 1175
174 nmdc:mga0k408_501857_c1 3300050493 Bacteria 719
175 nmdc:mga0qj67_98008_c1 3300050509 Bacteria 2361
176 nmdc:mga08y16_178803_c1 3300050511 Bacteria 2203
177 nmdc:mga08y16_39649_c1 3300050511 Bacteria 4941
178 Ga0495601_0446194 3300053077 Bacteria 837
179 Ga0495595_0030338 3300053084 Bacteria 2425
180 Ga0500555_017773 3300053103 Bacteria 2048
181 Ga0500616_0068644 3300053153 Bacteria 1815
182 Ga0501084_0000203 3300054114 Bacteria 45861
183 Ga0501084_0044967 3300054114 Bacteria 3697
184 Ga0587062_019446 3300059639 Bacteria 948
185 Ga0501082_0000059 3300060353 Bacteria 78018
186 Ga0501082_0171967 3300060353 Bacteria 1883
187 Ga0530510_0052686 3300061734 Bacteria 2940
188 Ga0111539_10016440
189 JGI24736J21556_1024147
190 Ga0006759J45824_1058026
191 rootH2_10031343
192 rootH1_10031022
193 JGI25404J52841_10004403
194 Ga0070658_10183604
195 Ga0070658_10476189
196 Ga0070683_100084097
197 Ga0070682_100064808
198 Ga0068868_100012318
199 Ga0070689_100001626
200 Ga0070692_10456347
201 Ga0070667_100356447
202 Ga0070705_100125977
203 Ga0070663_100431667
204 Ga0070678_100004015
205 Ga0070678_100300054
206 Ga0068867_100018488
207 Ga0068867_100632435
208 Ga0070707_100448945
209 Ga0070684_100455239
210 Ga0070672_100000267
211 Ga0068855_100000076
212 Ga0068855_100004916
213 Ga0068856_100139618
214 Ga0068856_100293763
215 Ga0068852_100517883
216 Ga0068859_100131146
217 Ga0068863_100091809
218 Ga0068863_100452118
219 Ga0068863_100890873
220 Ga0081455_10013061
221 Ga0081455_10084575
222 Ga0081539_10023831
223 Ga0075366_10079450
224 Ga0097621_100032389
225 Ga0097621_100648285
226 Ga0097621_100721208
227 Ga0068871_100431920
228 Ga0075428_100554966
229 Ga0075430_100055563
230 Ga0075429_100246239
231 Ga0068865_100040830
232 Ga0097620_100131145
233 Ga0075435_100004571
234 Ga0111539_10041467
235 Ga0111539_10614845
236 Ga0111539_10671010
237 Ga0111539_10985675
238 Ga0111539_11477650
239 Ga0105245_10009979
240 Ga0105247_10000345
241 Ga0105241_10064321
242 Ga0105237_10681605
243 Ga0105249_10446914
244 Ga0157374_10169838
245 Ga0157374_10509053
246 Ga0157378_10369613
247 Ga0163163_10052541
248 Ga0163163_10617506
249 Ga0157380_10280821
250 Ga0182008_10338061
251 Ga0157376_10066959
252 Ga0157376_10180449
253 Ga0157376_10399193
254 Ga0163161_10177159
255 Ga0163161_10915244
256 Ga0207643_10369364
257 Ga0207705_10522387
258 Ga0207654_10084122
259 Ga0207659_10099265
260 Ga0207687_10002097
261 Ga0207670_10053431
262 Ga0207704_10128181
263 Ga0207691_10000386
264 Ga0207691_10188929
265 Ga0207667_10004847
266 Ga0207667_10389026
267 Ga0207668_10428808
268 Ga0207677_10075166
269 Ga0207678_10019119
270 Ga0207678_10202768
271 Ga0207708_10258054
272 Ga0207708_10598185
273 Ga0207702_10061686
274 Ga0207641_10090999
275 Ga0207641_10531405
276 Ga0207648_10044816
277 Ga0207675_100050725
278 Ga0207683_10055276
279 Ga0207683_10167664
280 Ga0307509_10412535
281 Ga0307508_10002449
282 Ga0316575_10053153
283 Ga0316576_10003019
284 Ga0316576_10016496
285 Ga0316578_10088343
286 Ga0307516_10003830
287 Ga0307406_10038897
288 Ga0307412_10313877
289 Ga0307409_100049234
290 Ga0307409_100708217
291 Ga0307415_100221580
292 Ga0307507_10375690
293 Ga0373939_0072641
294 Ga0373941_0192011
295 Ga0373954_0260056
296 Ga0373955_0442954
297 Ga0373955_0458773
298 Ga0373931_0074378
299 Ga0373931_0098358
300 Ga0373933_0175488
301 Ga0373937_0054934
302 Ga0373937_0058195
303 Ga0316582_0119290
304 Ga0316584_0024539
305 Ga0373925_0009672
306 Ga0395905_0051390
307 Ga0395905_0485025
308 Ga0436360_0836985
309 Ga0439465_0150113
310 Ga0451789_0157626
311 Ga0451791_0467385
312 Ga0451797_1104518
313 Ga0451798_0930030
314 Ga0451800_0200223
315 Ga0451807_1073199
316 Ga0451807_2108797
317 Ga0451837_0426527
318 Ga0451837_0506261
319 Ga0451837_0877349
320 Ga0451841_0800885
321 Ga0451849_0047154
322 Ga0451851_0262192
323 Ga0451853_1477283
324 Ga0451853_3308082
325 Ga0439445_0128022
326 Ga0451577_0347782
327 Ga0453683_0029315
328 Ga0466960_0020068
329 Ga0451576_0907630
330 Ga0466967_0948650
331 Ga0495645_0503941
332 Ga0495589_0157005
333 Ga0495600_0321358
334 Ga0495581_0240677
335 Ga0495684_0481638
336 Ga0496122_0276885
337 Ga0501311_024946
338 Ga0501034_0016831
339 Ga0501038_0014805
340 Ga0501039_0462644
341 Ga0501043_0065595
342 Ga0501047_0023093
343 Ga0501047_0064596
344 Ga0501047_0141323
345 Ga0501067_0000412
346 Ga0501067_0017118
347 Ga0501067_0170312
348 Ga0501068_0000277
349 Ga0501069_0000578
350 Ga0501072_0000005
351 Ga0501073_0001700
352 Ga0501074_0000391
353 Ga0501074_0030675
354 Ga0501074_0454732
355 Ga0501077_0031977
356 Ga0501079_0009374
357 Ga0501080_0414128
358 Ga0501083_0374292
359 Ga0501035_0086180
360 nmdc:mga0k408_205585_c1
361 nmdc:mga0k408_501857_c1
362 nmdc:mga0qj67_98008_c1
363 nmdc:mga08y16_178803_c1
364 nmdc:mga08y16_39649_c1
365 Ga0495601_0446194
366 Ga0495595_0030338
367 Ga0500555_017773
368 Ga0500616_0068644
369 Ga0501084_0000203
370 Ga0501084_0044967
371 Ga0587062_019446
372 Ga0501082_0000059
373 Ga0501082_0171967
374 Ga0530510_0052686

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00297

Ribosomal_L3

Ribosomal protein L3

32

212

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
8c97-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.8811 1 209
8c93-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.87 1 209
8c97-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.8661 1 209
8c93-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.8599 1 209
6pvk-assembly1.cif.gz_D bacterial 45srbga ribosomal particle class a 0.8586 2 209
ID Description Score Start End Superfamily
af_P9WH87_35_101_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9686 34 98 3.30.160.810
af_Q9LIT4_106_169_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9685 34 98 3.30.160.810
af_Q9SKX4_88_148_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9498 34 85 3.30.160.810
af_Q9LIT4_106_169_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9393 34 98 3.30.160.810
af_Q54I61_95_160_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9387 32 95 3.30.160.810
ID Description Score Start End GO Terms
AF-A0A2V6DPT5-F1-model_v4 50S ribosomal protein L3 0.9442 1 84 GO:0003735
GO:0006412
GO:0022625
AF-A0A529QAV9-F1-model_v4 50S ribosomal protein L3 0.9373 2 87 GO:0003735
GO:0006412
GO:0022625
AF-A0A087B7P6-F1-model_v4 deleted 0.9349 4 105
AF-A0A4Q5QTA6-F1-model_v4 50S ribosomal protein L3 0.932 6 107 GO:0003735
GO:0006412
GO:0022625
AF-A0A564VPD5-F1-model_v4 deleted 0.9267 4 106

Map