F287356

General Info

Members Datasets Scaffolds Average Seq Length
187 139 374 373

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100135174|Ga0068855_1001351742
Length 446
Sequence MLNAVAAAAAFVPTSPASHAXRAGSDPGSTSGTARGRAEPAPAARGGAPDEVRAARAAGLRHVSDTRTPGLTRRPTGKRVRQGRRWVPVFDIFDARGRPVRDEATLERVRRLAIPPAWTDVWICPDPRGHLQATGRDARRRKQYRYHPRWREERDSTKYERMIDFGRAWPRLRRAVAADLNLPGLPRRKVLATVVRLLDTTFIRVGNEEYERANRSFGLTTLKDRHVEIGRGRVRFHFRGKSGVFHDISVHDPTVAGIVRRCRDLPGQELFQYLDDNGQPASLGSSDVNDYIHEVAGHDFTAKDIRTWAGTVLAAAALHTLGVGGAAAREGARRQGGAPAGHGRASNRDVTRAIEQVAERLGNTAAVCRKCYVHPHVVASFLDGTLGDAFAHLGRAPKGTTGLHPDERAVLALLRRRAAAEKTGTLLEGQLRRSLRARRPPARRRS

Samples

Sample ID Description Type Environment
1 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
5 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
30 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
31 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
32 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
37 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
39 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
40 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
45 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
46 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
47 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
48 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
51 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
52 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
57 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
58 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
59 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
60 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
61 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
62 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
63 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
64 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
92 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
93 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
94 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
95 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
96 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
97 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
98 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
99 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
100 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
101 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
102 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
103 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
104 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
105 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
106 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
107 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
108 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
109 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
110 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
111 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
112 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
113 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
114 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
115 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
116 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
117 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
119 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
120 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
124 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
125 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
126 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
127 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
128 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
129 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
130 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
131 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
132 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
133 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
134 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
135 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
136 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
137 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
138 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
139 2738541276 Cellvibrio sp. YR554 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.93
Metatranscriptomes 0.53
Isolates 0.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.56
Nodule 0
Rhizoplane 1.07
Rhizosphere 86.63
Stem 0
Stem Tuber 0
Unclassified 4.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068855_100135174 3300005563 Bacteria 2813
2 rootH2_10154567 3300003320 Bacteria 8794
3 rootL2_10053045 3300003322 Bacteria 6060
4 rootL2_10088547 3300003322 Bacteria 2987
5 JGI25405J52794_10002651 3300003911 Bacteria 3095
6 Ga0058860_10803976 3300004801 Bacteria 1282
7 Ga0070658_10000789 3300005327 Bacteria 27151
8 Ga0070658_10001179 3300005327 Bacteria 22354
9 Ga0070658_10100412 3300005327 Bacteria 2392
10 Ga0070658_10172386 3300005327 Bacteria 1818
11 Ga0070683_100001444 3300005329 Bacteria 18259
12 Ga0070690_100050730 3300005330 Bacteria 2647
13 Ga0070680_100071145 3300005336 Bacteria 2858
14 Ga0070689_100000008 3300005340 Bacteria 250116
15 Ga0070668_100048133 3300005347 Bacteria 3279
16 Ga0070674_100006543 3300005356 Bacteria 6808
17 Ga0070673_100120062 3300005364 Bacteria 2191
18 Ga0070667_100058463 3300005367 Bacteria 3260
19 Ga0070714_100137110 3300005435 Bacteria 2192
20 Ga0070694_100010753 3300005444 Bacteria 5660
21 Ga0070694_100060908 3300005444 Bacteria 2575
22 Ga0070708_100002883 3300005445 Bacteria 13353
23 Ga0070708_100216961 3300005445 Bacteria 1793
24 Ga0070662_100045752 3300005457 Unclassified 3141
25 Ga0070681_10033326 3300005458 Bacteria 5171
26 Ga0070706_100018477 3300005467 Bacteria 6428
27 Ga0070699_100066893 3300005518 Bacteria 3120
28 Ga0070699_100080542 3300005518 Bacteria 2838
29 Ga0070699_100084406 3300005518 Bacteria 2771
30 Ga0070679_100040364 3300005530 Bacteria 4643
31 Ga0070679_100041168 3300005530 Bacteria 4598
32 Ga0070679_100241342 3300005530 Bacteria 1764
33 Ga0070684_100000567 3300005535 Bacteria 25497
34 Ga0070684_100031350 3300005535 Bacteria 4525
35 Ga0070697_100064237 3300005536 Bacteria 2998
36 Ga0068853_100007084 3300005539 Bacteria 8970
37 Ga0068853_100224336 3300005539 Bacteria 1717
38 Ga0070672_100110518 3300005543 Unclassified 2239
39 Ga0070686_100004733 3300005544 Bacteria 7505
40 Ga0070665_100051804 3300005548 Bacteria 4116
41 Ga0070665_100103633 3300005548 Unclassified 2848
42 Ga0070704_100018563 3300005549 Bacteria 4450
43 Ga0070704_100173280 3300005549 Bacteria 1718
44 Ga0068855_100010751 3300005563 Bacteria 11047
45 Ga0068855_100311450 3300005563 Bacteria 1741
46 Ga0068856_100043219 3300005614 Bacteria 4434
47 Ga0068856_100076988 3300005614 Bacteria 3305
48 Ga0068856_100195885 3300005614 Bacteria 2034
49 Ga0068852_100041283 3300005616 Bacteria 3898
50 Ga0068861_100175238 3300005719 Bacteria 1781
51 Ga0068863_100015987 3300005841 Bacteria 7198
52 Ga0068863_100060994 3300005841 Bacteria 3566
53 Ga0068860_100128050 3300005843 Unclassified 2434
54 Ga0068862_100000571 3300005844 Bacteria 38369
55 Ga0068862_100093792 3300005844 Bacteria 2618
56 Ga0081455_10003007 3300005937 Bacteria 19674
57 Ga0081455_10057819 3300005937 Bacteria 3285
58 Ga0081539_10009769 3300005985 Bacteria 7936
59 Ga0075365_10121721 3300006038 Unclassified 1800
60 Ga0075368_10001103 3300006042 Bacteria 8504
61 Ga0075363_100001119 3300006048 Bacteria 9746
62 Ga0075364_10002518 3300006051 Bacteria 10265
63 Ga0075367_10003753 3300006178 Bacteria 7314
64 Ga0097621_100041493 3300006237 Bacteria 3704
65 Ga0068871_100151650 3300006358 Bacteria 1977
66 Ga0075434_100011531 3300006871 Bacteria 8339
67 Ga0068865_100057175 3300006881 Bacteria 2720
68 Ga0075436_100114504 3300006914 Bacteria 1883
69 Ga0075435_100023140 3300007076 Bacteria 4800
70 Ga0105240_10007962 3300009093 Bacteria 15283
71 Ga0105240_10025733 3300009093 Bacteria 7730
72 Ga0105247_10074154 3300009101 Bacteria 2133
73 Ga0105241_10334328 3300009174 Bacteria 1310
74 Ga0105242_10023669 3300009176 Bacteria 4842
75 Ga0105237_10004995 3300009545 Bacteria 15109
76 Ga0105238_10027581 3300009551 Bacteria 5788
77 Ga0105238_10156615 3300009551 Bacteria 2253
78 Ga0105239_10000211 3300010375 Bacteria 85890
79 Ga0105239_10015520 3300010375 Bacteria 8435
80 Ga0105239_10217734 3300010375 Bacteria 2141
81 Ga0105246_10019234 3300011119 Bacteria 4361
82 Ga0157371_10002290 3300013102 Bacteria 18458
83 Ga0157370_10229210 3300013104 Bacteria 1720
84 Ga0163162_10051135 3300013306 Bacteria 4145
85 Ga0163162_10055363 3300013306 Bacteria 3993
86 Ga0157372_10102913 3300013307 Bacteria 3262
87 Ga0157372_10112562 3300013307 Bacteria 3118
88 Ga0157372_10151648 3300013307 Bacteria 2675
89 Ga0157375_10064921 3300013308 Bacteria 3636
90 Ga0157380_10276800 3300014326 Bacteria 1533
91 Ga0157376_10141361 3300014969 Bacteria 2160
92 Ga0157376_10243103 3300014969 Bacteria 1678
93 Ga0207688_10010181 3300025901 Bacteria 5117
94 Ga0207688_10118003 3300025901 Bacteria 1546
95 Ga0207645_10026059 3300025907 Unclassified 3780
96 Ga0207643_10053744 3300025908 Unclassified 2288
97 Ga0207705_10065384 3300025909 Bacteria 2629
98 Ga0207684_10015706 3300025910 Bacteria 6515
99 Ga0207707_10110482 3300025912 Bacteria 2403
100 Ga0207695_10000164 3300025913 Bacteria 196777
101 Ga0207695_10001125 3300025913 Bacteria 46438
102 Ga0207695_10026860 3300025913 Bacteria 6419
103 Ga0207671_10000434 3300025914 Bacteria 57541
104 Ga0207660_10069608 3300025917 Bacteria 2556
105 Ga0207652_10005149 3300025921 Bacteria 10607
106 Ga0207652_10007405 3300025921 Bacteria 8851
107 Ga0207652_10239888 3300025921 Bacteria 1634
108 Ga0207681_10196961 3300025923 Unclassified 1545
109 Ga0207694_10009979 3300025924 Bacteria 7159
110 Ga0207694_10105742 3300025924 Bacteria 2235
111 Ga0207650_10034896 3300025925 Bacteria 3650
112 Ga0207650_10120817 3300025925 Bacteria 2039
113 Ga0207706_10027620 3300025933 Bacteria 5073
114 Ga0207670_10000008 3300025936 Bacteria 303208
115 Ga0207691_10031320 3300025940 Bacteria 4965
116 Ga0207689_10001626 3300025942 Bacteria 21283
117 Ga0207689_10028551 3300025942 Bacteria 4667
118 Ga0207661_10307643 3300025944 Bacteria 1422
119 Ga0207667_10141200 3300025949 Bacteria 2480
120 Ga0207651_10040949 3300025960 Bacteria 3071
121 Ga0207703_10300662 3300026035 Bacteria 1463
122 Ga0207639_10001730 3300026041 Bacteria 14701
123 Ga0207639_10172440 3300026041 Bacteria 1833
124 Ga0207702_10091507 3300026078 Bacteria 2663
125 Ga0207702_10096752 3300026078 Bacteria 2597
126 Ga0207641_10322821 3300026088 Bacteria 1464
127 Ga0207675_100223548 3300026118 Bacteria 1814
128 Ga0207683_10002383 3300026121 Bacteria 16423
129 Ga0268265_10006471 3300028380 Bacteria 7938
130 Ga0265319_1045291 3300028563 Bacteria 1471
131 Ga0265338_10191126 3300028800 Bacteria 1552
132 Ga0265339_10053949 3300031249 Bacteria 2185
133 Ga0307508_10001107 3300031616 Bacteria 31214
134 Ga0265342_10000097 3300031712 Bacteria 96401
135 Ga0307409_100011470 3300031995 Bacteria 5592
136 Ga0307416_100026147 3300032002 Bacteria 4295
137 Ga0307415_100161752 3300032126 Bacteria 1736
138 Ga0373957_0034047 3300035120 Bacteria 1884
139 Ga0373937_0191032 3300036401 Bacteria 1924
140 Ga0395900_0050290 3300037418 Bacteria 4294
141 Ga0395900_0056336 3300037418 Bacteria 4046
142 Ga0395900_0332621 3300037418 Bacteria 1497
143 Ga0395898_0104962 3300037466 Bacteria 2710
144 Ga0395905_0000424 3300037471 Bacteria 58940
145 Ga0395905_0027506 3300037471 Bacteria 5363
146 Ga0395901_0031172 3300038443 Bacteria 5497
147 Ga0436365_0316489 3300039437 Bacteria 3859
148 Ga0439449_0001718 3300042007 Bacteria 8601
149 Ga0451577_0118812 3300042876 Bacteria 2368
150 Ga0466969_0008832 3300044656 Bacteria 5343
151 Ga0466966_0006280 3300044684 Bacteria 7862
152 Ga0466961_0025821 3300044693 Bacteria 3776
153 Ga0466970_0067991 3300044765 Bacteria 1914
154 Ga0466970_0101980 3300044765 Bacteria 1563
155 Ga0466959_0028247 3300045049 Bacteria 4159
156 Ga0495638_0094694 3300046460 Bacteria 1795
157 Ga0495651_0245442 3300046462 Bacteria 1226
158 Ga0495613_0140500 3300046689 Bacteria 1726
159 Ga0496112_0041827 3300048915 Bacteria 4484
160 Ga0496112_0270762 3300048915 Bacteria 1647
161 Ga0501046_0046587 3300049580 Bacteria 3441
162 Ga0501067_0003836 3300049583 Bacteria 8299
163 Ga0501067_0026658 3300049583 Bacteria 3200
164 Ga0501069_0002842 3300049585 Bacteria 8862
165 Ga0501072_0191666 3300049588 Bacteria 1630
166 Ga0501073_0001549 3300049589 Bacteria 17037
167 Ga0501073_0019981 3300049589 Bacteria 4830
168 Ga0501074_0002148 3300049590 Bacteria 13639
169 Ga0501235_002568 3300049669 Bacteria 3907
170 Ga0501044_0027378 3300049823 Bacteria 6026
171 nmdc:mga03n38_20585_c1 3300050490 Bacteria 2642
172 nmdc:mga00v17_7739_c1 3300050491 Bacteria 5756
173 nmdc:mga0yw44_14418_c1 3300050492 Bacteria 4197
174 nmdc:mga06z11_6433_c1 3300050494 Bacteria 4780
175 nmdc:mga0rr50_11027_c1 3300050513 Bacteria 5763
176 nmdc:mga08x19_24559_c1 3300050514 Bacteria 3748
177 nmdc:mga08x19_63593_c1 3300050514 Bacteria 2394
178 Ga0500641_0001454 3300053096 Bacteria 8437
179 Ga0500555_002089 3300053103 Bacteria 5864
180 Ga0500559_0016253 3300053136 Bacteria 3143
181 Ga0500568_0011036 3300053139 Bacteria 4208
182 Ga0500616_0003055 3300053153 Bacteria 13167
183 Ga0500616_0050964 3300053153 Bacteria 2183
184 Ga0500645_002623 3300053730 Bacteria 7872
185 Ga0501084_0000960 3300054114 Bacteria 22322
186 Ga0501082_0021098 3300060353 Bacteria 5617
187 2738713535 2738541276 Bacteria 4690596
188 Ga0068855_100135174
189 rootH2_10154567
190 rootL2_10053045
191 rootL2_10088547
192 JGI25405J52794_10002651
193 Ga0058860_10803976
194 Ga0070658_10000789
195 Ga0070658_10001179
196 Ga0070658_10100412
197 Ga0070658_10172386
198 Ga0070683_100001444
199 Ga0070690_100050730
200 Ga0070680_100071145
201 Ga0070689_100000008
202 Ga0070668_100048133
203 Ga0070674_100006543
204 Ga0070673_100120062
205 Ga0070667_100058463
206 Ga0070714_100137110
207 Ga0070694_100010753
208 Ga0070694_100060908
209 Ga0070708_100002883
210 Ga0070708_100216961
211 Ga0070662_100045752
212 Ga0070681_10033326
213 Ga0070706_100018477
214 Ga0070699_100066893
215 Ga0070699_100080542
216 Ga0070699_100084406
217 Ga0070679_100040364
218 Ga0070679_100041168
219 Ga0070679_100241342
220 Ga0070684_100000567
221 Ga0070684_100031350
222 Ga0070697_100064237
223 Ga0068853_100007084
224 Ga0068853_100224336
225 Ga0070672_100110518
226 Ga0070686_100004733
227 Ga0070665_100051804
228 Ga0070665_100103633
229 Ga0070704_100018563
230 Ga0070704_100173280
231 Ga0068855_100010751
232 Ga0068855_100311450
233 Ga0068856_100043219
234 Ga0068856_100076988
235 Ga0068856_100195885
236 Ga0068852_100041283
237 Ga0068861_100175238
238 Ga0068863_100015987
239 Ga0068863_100060994
240 Ga0068860_100128050
241 Ga0068862_100000571
242 Ga0068862_100093792
243 Ga0081455_10003007
244 Ga0081455_10057819
245 Ga0081539_10009769
246 Ga0075365_10121721
247 Ga0075368_10001103
248 Ga0075363_100001119
249 Ga0075364_10002518
250 Ga0075367_10003753
251 Ga0097621_100041493
252 Ga0068871_100151650
253 Ga0075434_100011531
254 Ga0068865_100057175
255 Ga0075436_100114504
256 Ga0075435_100023140
257 Ga0105240_10007962
258 Ga0105240_10025733
259 Ga0105247_10074154
260 Ga0105241_10334328
261 Ga0105242_10023669
262 Ga0105237_10004995
263 Ga0105238_10027581
264 Ga0105238_10156615
265 Ga0105239_10000211
266 Ga0105239_10015520
267 Ga0105239_10217734
268 Ga0105246_10019234
269 Ga0157371_10002290
270 Ga0157370_10229210
271 Ga0163162_10051135
272 Ga0163162_10055363
273 Ga0157372_10102913
274 Ga0157372_10112562
275 Ga0157372_10151648
276 Ga0157375_10064921
277 Ga0157380_10276800
278 Ga0157376_10141361
279 Ga0157376_10243103
280 Ga0207688_10010181
281 Ga0207688_10118003
282 Ga0207645_10026059
283 Ga0207643_10053744
284 Ga0207705_10065384
285 Ga0207684_10015706
286 Ga0207707_10110482
287 Ga0207695_10000164
288 Ga0207695_10001125
289 Ga0207695_10026860
290 Ga0207671_10000434
291 Ga0207660_10069608
292 Ga0207652_10005149
293 Ga0207652_10007405
294 Ga0207652_10239888
295 Ga0207681_10196961
296 Ga0207694_10009979
297 Ga0207694_10105742
298 Ga0207650_10034896
299 Ga0207650_10120817
300 Ga0207706_10027620
301 Ga0207670_10000008
302 Ga0207691_10031320
303 Ga0207689_10001626
304 Ga0207689_10028551
305 Ga0207661_10307643
306 Ga0207667_10141200
307 Ga0207651_10040949
308 Ga0207703_10300662
309 Ga0207639_10001730
310 Ga0207639_10172440
311 Ga0207702_10091507
312 Ga0207702_10096752
313 Ga0207641_10322821
314 Ga0207675_100223548
315 Ga0207683_10002383
316 Ga0268265_10006471
317 Ga0265319_1045291
318 Ga0265338_10191126
319 Ga0265339_10053949
320 Ga0307508_10001107
321 Ga0265342_10000097
322 Ga0307409_100011470
323 Ga0307416_100026147
324 Ga0307415_100161752
325 Ga0373957_0034047
326 Ga0373937_0191032
327 Ga0395900_0050290
328 Ga0395900_0056336
329 Ga0395900_0332621
330 Ga0395898_0104962
331 Ga0395905_0000424
332 Ga0395905_0027506
333 Ga0395901_0031172
334 Ga0436365_0316489
335 Ga0439449_0001718
336 Ga0451577_0118812
337 Ga0466969_0008832
338 Ga0466966_0006280
339 Ga0466961_0025821
340 Ga0466970_0067991
341 Ga0466970_0101980
342 Ga0466959_0028247
343 Ga0495638_0094694
344 Ga0495651_0245442
345 Ga0495613_0140500
346 Ga0496112_0041827
347 Ga0496112_0270762
348 Ga0501046_0046587
349 Ga0501067_0003836
350 Ga0501067_0026658
351 Ga0501069_0002842
352 Ga0501072_0191666
353 Ga0501073_0001549
354 Ga0501073_0019981
355 Ga0501074_0002148
356 Ga0501235_002568
357 Ga0501044_0027378
358 nmdc:mga03n38_20585_c1
359 nmdc:mga00v17_7739_c1
360 nmdc:mga0yw44_14418_c1
361 nmdc:mga06z11_6433_c1
362 nmdc:mga0rr50_11027_c1
363 nmdc:mga08x19_24559_c1
364 nmdc:mga08x19_63593_c1
365 Ga0500641_0001454
366 Ga0500555_002089
367 Ga0500559_0016253
368 Ga0500568_0011036
369 Ga0500616_0003055
370 Ga0500616_0050964
371 Ga0500645_002623
372 Ga0501084_0000960
373 Ga0501082_0021098
374 2738713535

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21338

Top1B_N_bact

Bacterial DNA topoisomerase IB, N-terminal domain

89

137

0.97

PF01028

Topoisom_I

Eukaryotic DNA topoisomerase I, catalytic core

147

384

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2h7g-assembly1.cif.gz_X structure of variola topoisomerase non-covalently bound to dna 0.8148 38 362
2h7g-assembly1.cif.gz_X structure of variola topoisomerase non-covalently bound to dna 0.803 38 362
2b9s-assembly1.cif.gz_A crystal structure of heterodimeric l. donovani topoisomerase i-vanadate-dna complex 0.7848 70 304
1ej9-assembly1.cif.gz_A crystal structure of human topoisomerase i dna complex 0.7582 86 350
3m4a-assembly1.cif.gz_A crystal structure of a bacterial topoisomerase ib in complex with dna reveals a secondary dna binding site 0.7337 59 362
ID Description Score Start End Superfamily
3m4aA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9606 138 253 3.90.15.10
3m4aA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9371 138 253 3.90.15.10
2f4qA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9273 138 250 3.90.15.10
af_Q9USZ0_628_894_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.8939 183 208 2.130.10.10
af_A0A2R8S0L3_185_312_3.90.15.10 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.8835 107 213 3.90.15.10
ID Description Score Start End GO Terms
AF-A0A2A2KIQ3-F1-model_v4 DNA topoisomerase I catalytic core eukaryotic-type domain-containing protein 0.9928 120 240 GO:0003677
GO:0003917
GO:0006265
AF-A0A436L3U7-F1-model_v4 deleted 0.9853 135 292
AF-A0A4Q3SH14-F1-model_v4 DNA topoisomerase IB 0.9835 7 329 GO:0003677
GO:0003917
GO:0006265
AF-A0A0E4BYR6-F1-model_v4 Topoisomerase IB 0.9817 237 322 GO:0003677
GO:0003917
GO:0006265
AF-A0A535M3I7-F1-model_v4 DNA topoisomerase IB 0.9785 227 315 GO:0003677
GO:0003917
GO:0006265

Map