F286597

General Info

Members Datasets Scaffolds Average Seq Length
186 145 372 315

Family's Representative Sequence

Representative Sequence 3300048089|Ga0495614_0002230|Ga0495614_0002230_5623_6744
Length 355
Sequence MWLSPRGSSGRTVTGACRSRDRGTLPLAPSALEVPVTMDDADSPAGKKRAKGRIRQPLRYRLKRDKALLLFCLPGVLYFVLFFYLPLAGNVIAFQDYQPFLGFKQSPFVGLANFTALLSEPEFWSAVSNTLQITAIQLLLYFPAPIALALLLNSLISEKIKRFIQTIVYLPHFLSWVVVVAMFKQVLGGAGSVTTLLMEHGVNIGNVMTDPGTFKLLITAQAIWKDCGWGTIIFLASIASIDTGQYESAAMDGAGWLRRIWHITLPGIRPVILMLLILRLGDILSVGFEQIILQRDAVGKDAAEVMDTYVYYHGVIDGDWGMSTAAGLMKGVIGFALILAANKLAHRFGEQGVYR

Samples

Sample ID Description Type Environment
1 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
7 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
9 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
10 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
11 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
12 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
13 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
14 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
15 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
16 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
17 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
20 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
21 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
22 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
23 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
24 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
25 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
26 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
27 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
28 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
29 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
30 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
31 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
32 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
33 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
34 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
35 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
36 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
37 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
38 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
39 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
40 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
41 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
42 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
43 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
44 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
45 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
46 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
47 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
48 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
49 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
50 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
51 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
52 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
53 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
54 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
55 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
56 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
57 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
58 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
59 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
60 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
61 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
62 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
63 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
64 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
65 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
66 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
67 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
68 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
69 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
70 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
71 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
72 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
73 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
74 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
75 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
76 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
77 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
78 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
79 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
80 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
81 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
82 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
83 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
84 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
85 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
96 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
99 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
100 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
101 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
102 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
103 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
104 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
105 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
106 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
107 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
108 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
109 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
110 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
111 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
112 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
113 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
114 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
115 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
116 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
117 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
118 2862574272 Streptomyces sp. AcE210 Isolate Nodule
119 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
120 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
121 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
122 2883821847 Microlunatus elymi KUDC0627 Isolate Rhizosphere
123 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
124 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
125 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
126 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
127 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
128 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
129 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
130 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
131 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
132 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
133 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
134 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
135 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
136 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
137 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
138 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
139 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
140 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
141 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
142 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
143 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
144 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
145 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 73.66
Metatranscriptomes 0
Isolates 26.34

Biome Distribution

Category Percentage (%)
Aerial Root 0.54
Bulb 0
Endosphere 2.69
Nodule 0.54
Rhizoplane 1.61
Rhizosphere 74.73
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495614_0002230 3300048089 Bacteria 8594
2 JGI25162J39368_1005580 3300002737 Bacteria 2406
3 Ga0070674_100309649 3300005356 Bacteria 1262
4 Ga0070714_100002307 3300005435 Bacteria 14038
5 Ga0070714_100008799 3300005435 Bacteria 7893
6 Ga0070713_100033504 3300005436 Bacteria 4116
7 Ga0068856_100189604 3300005614 Bacteria 2070
8 Ga0081455_10000167 3300005937 Bacteria 81186
9 Ga0081455_10025027 3300005937 Bacteria 5515
10 Ga0081455_10037441 3300005937 Bacteria 4309
11 Ga0081540_1047960 3300005983 Bacteria 2143
12 Ga0070717_10088202 3300006028 Bacteria 2614
13 Ga0075431_100001579 3300006847 Bacteria 21182
14 Ga0111539_10377850 3300009094 Bacteria 1649
15 Ga0114129_10192146 3300009147 Bacteria 2771
16 Ga0157369_10015649 3300013105 Bacteria 8548
17 Ga0209566_104018 3300025225 Bacteria 2091
18 Ga0209437_101071 3300025233 Bacteria 8874
19 Ga0207426_1011829 3300025302 Bacteria 3302
20 Ga0207664_10003037 3300025929 Bacteria 11165
21 Ga0207664_10004446 3300025929 Bacteria 9496
22 Ga0207669_10261568 3300025937 Bacteria 1294
23 Ga0307515_10057323 3300028794 Bacteria 5639
24 Ga0307515_10067819 3300028794 Bacteria 4914
25 Ga0307512_10015643 3300030522 Bacteria 7022
26 Ga0307509_10088576 3300031507 Bacteria 3177
27 Ga0307408_100010738 3300031548 Bacteria 6042
28 Ga0307514_10028227 3300031649 Bacteria 4528
29 Ga0307405_10202875 3300031731 Bacteria 1441
30 Ga0307410_10050592 3300031852 Bacteria 2795
31 Ga0307406_10067318 3300031901 Bacteria 2334
32 Ga0307412_10013469 3300031911 Bacteria 4797
33 Ga0307416_100012979 3300032002 Bacteria 5642
34 Ga0307411_10033793 3300032005 Bacteria 3175
35 Ga0451791_0540595 3300041451 Bacteria 1467
36 Ga0466969_0036626 3300044656 Bacteria 2477
37 Ga0466972_0005987 3300044658 Bacteria 6109
38 Ga0466966_0017092 3300044684 Bacteria 4799
39 Ga0466961_0054043 3300044693 Bacteria 2562
40 Ga0466959_0018355 3300045049 Bacteria 5135
41 Ga0466958_0260628 3300045836 Bacteria 1110
42 Ga0466967_0177666 3300045976 Bacteria 2006
43 Ga0495592_0000011 3300046454 Bacteria 156647
44 Ga0495592_0054362 3300046454 Bacteria 2967
45 Ga0495603_0002050 3300046455 Bacteria 11852
46 Ga0495603_0002886 3300046455 Bacteria 10166
47 Ga0495603_0014800 3300046455 Bacteria 4718
48 Ga0495603_0024371 3300046455 Bacteria 3658
49 Ga0495629_0000507 3300046459 Bacteria 32691
50 Ga0495629_0000540 3300046459 Bacteria 31186
51 Ga0495629_0001427 3300046459 Bacteria 18846
52 Ga0495629_0005666 3300046459 Bacteria 9327
53 Ga0495651_0000994 3300046462 Bacteria 21999
54 Ga0495653_0000683 3300046463 Bacteria 25936
55 Ga0495662_0000263 3300046476 Bacteria 22241
56 Ga0495662_0164261 3300046476 Bacteria 1094
57 Ga0495664_0000244 3300046477 Bacteria 26149
58 Ga0495585_0047561 3300046492 Bacteria 2389
59 Ga0495594_0000225 3300046499 Bacteria 27497
60 Ga0495594_0004052 3300046499 Bacteria 7531
61 Ga0495594_0007897 3300046499 Bacteria 5470
62 Ga0495608_0032060 3300046511 Bacteria 3552
63 Ga0495628_0000064 3300046516 Bacteria 85991
64 Ga0495630_0000035 3300046517 Bacteria 118545
65 Ga0495666_0000662 3300046526 Bacteria 15542
66 Ga0495652_0003654 3300046529 Bacteria 15067
67 Ga0495654_0058534 3300046530 Bacteria 1859
68 Ga0495640_0016876 3300046533 Bacteria 5456
69 Ga0495587_0000064 3300046536 Bacteria 90007
70 Ga0495609_0091887 3300046538 Bacteria 1320
71 Ga0495645_0000042 3300046543 Bacteria 91093
72 Ga0495622_0025080 3300046557 Bacteria 2785
73 Ga0495622_0027399 3300046557 Bacteria 2660
74 Ga0495622_0031843 3300046557 Bacteria 2463
75 Ga0495667_0000227 3300046559 Bacteria 36831
76 Ga0495634_0000148 3300046642 Bacteria 62329
77 Ga0495611_0017177 3300046648 Bacteria 3093
78 Ga0495625_0040744 3300046660 Bacteria 3384
79 Ga0495588_0012593 3300046674 Bacteria 4003
80 Ga0495588_0088459 3300046674 Bacteria 1621
81 Ga0495657_0032086 3300046675 Bacteria 3668
82 Ga0495599_0000044 3300046678 Bacteria 89350
83 Ga0495623_0000862 3300046679 Bacteria 20553
84 Ga0495646_0000028 3300046680 Bacteria 92735
85 Ga0495613_0008921 3300046689 Bacteria 7440
86 Ga0495613_0029131 3300046689 Bacteria 4105
87 Ga0495589_0019154 3300046794 Bacteria 3511
88 Ga0495600_0001063 3300046809 Bacteria 14886
89 Ga0495581_0157226 3300047315 Bacteria 1328
90 Ga0495604_0000542 3300047317 Bacteria 33256
91 Ga0495674_0000036 3300047319 Bacteria 103830
92 Ga0495676_0001527 3300047321 Bacteria 20037
93 Ga0495676_0002024 3300047321 Bacteria 17865
94 Ga0495676_0008642 3300047321 Bacteria 9325
95 Ga0495676_0020415 3300047321 Bacteria 5812
96 Ga0495687_073034 3300047443 Bacteria 1368
97 Ga0495675_0000464 3300047444 Bacteria 26731
98 Ga0495685_002459 3300047447 Bacteria 5803
99 Ga0495602_0000078 3300048088 Bacteria 94384
100 Ga0495614_0001672 3300048089 Bacteria 9672
101 Ga0495614_0006007 3300048089 Bacteria 5462
102 Ga0495614_0012303 3300048089 Bacteria 3759
103 Ga0496102_0061370 3300048905 Bacteria 3441
104 Ga0496106_0061221 3300048909 Bacteria 2855
105 Ga0496116_0026031 3300048919 Bacteria 4287
106 Ga0496116_0060738 3300048919 Bacteria 2450
107 Ga0496117_0006280 3300048920 Bacteria 12099
108 Ga0496118_0001331 3300048921 Bacteria 37503
109 Ga0496118_0170817 3300048921 Bacteria 1329
110 Ga0496119_0016403 3300048922 Bacteria 5639
111 Ga0496122_0009579 3300048925 Bacteria 10162
112 Ga0496123_0074767 3300048926 Bacteria 2095
113 Ga0496124_0000037 3300048927 Bacteria 317430
114 Ga0496124_0018617 3300048927 Bacteria 6498
115 Ga0496124_0159876 3300048927 Bacteria 1757
116 Ga0496126_0000878 3300048929 Bacteria 52921
117 Ga0501031_0080024 3300049568 Bacteria 2130
118 Ga0501032_0077380 3300049569 Bacteria 2215
119 Ga0501036_0090002 3300049572 Bacteria 2593
120 Ga0501037_0038225 3300049573 Bacteria 3537
121 Ga0501037_0057205 3300049573 Bacteria 2847
122 Ga0501038_0044328 3300049574 Bacteria 3866
123 Ga0501038_0181224 3300049574 Bacteria 1699
124 Ga0501046_0042329 3300049580 Bacteria 3632
125 Ga0501046_0128327 3300049580 Bacteria 1924
126 Ga0501047_0039872 3300049581 Bacteria 4543
127 Ga0501047_0041681 3300049581 Bacteria 4436
128 Ga0501047_0076306 3300049581 Bacteria 3225
129 Ga0501074_0047394 3300049590 Bacteria 3107
130 Ga0501083_0010985 3300049744 Bacteria 6365
131 Ga0501044_0068746 3300049823 Bacteria 3607
132 Ga0501044_0090270 3300049823 Bacteria 3091
133 nmdc:mga05p37_163371_c1 3300050507 Bacteria 2718
134 nmdc:mga06r32_21680_c1 3300050510 Bacteria 5933
135 Ga0495601_0117122 3300053077 Bacteria 1728
136 Ga0500579_140819 3300053143 Bacteria 1090
137 Ga0466962_0018632 3300061719 Bacteria 3339
138 2512732004 2512564039 Bacteria 8739048
139 2585297110 2582581312 Bacteria 7308206
140 2595320136 2593339198 Bacteria 7267884
141 2643736344 2643221543 Bacteria 6628015
142 2676473105 2675903058 Bacteria 6822861
143 2676478262 2675903058 Bacteria 6822861
144 2753300944 2751185788 Bacteria 4541048
145 2753302319 2751185788 Bacteria 4541048
146 2768647646 2767802112 Bacteria 6465194
147 2808890963 2808606370 Bacteria 4942454
148 2816420947 2816332119 Bacteria 8120218
149 2819744639 2818991472 Bacteria 10089953
150 2821113158 2821111986 Bacteria 6894338
151 2827631653 2827628540 Bacteria 6858585
152 2827633404 2827628540 Bacteria 6858585
153 2832007070 2832004796 Bacteria 6538017
154 2837268725 2837268691 Bacteria 7850704
155 2862294942 2862290372 Bacteria 7471434
156 2862576704 2862574272 Bacteria 10567477
157 2862706117 2862705112 Bacteria 6563286
158 2866070376 2866065130 Bacteria 6518152
159 2867512743 2867507094 Bacteria 6506033
160 2883825388 2883821847 Bacteria 5121194
161 2885529656 2885526491 Bacteria 7164189
162 2887446054 2887443736 Bacteria 4426037
163 2889045334 2889042446 Bacteria 7618936
164 2895443276 2895442618 Bacteria 11027144
165 2904164926 2904162308 Bacteria 7086713
166 2904492207 2904490793 Bacteria 7046938
167 2912760706 2912757875 Bacteria 7940295
168 2919161437 2919160200 Bacteria 6929020
169 2925333270 2925326138 Bacteria 9652120
170 2928105272 2928104781 Bacteria 3877447
171 2928122155 2928121344 Bacteria 3972376
172 2931388766 2931384279 Bacteria 7299545
173 2945992660 2945991243 Bacteria 7008369
174 2946039191 2946037020 Bacteria 4900426
175 2946055407 2946053406 Bacteria 6978655
176 2980182835 2980182181 Bacteria 9454109
177 2980189583 2980182181 Bacteria 9454109
178 2984554460 2984551494 Bacteria 3877562
179 2988228968 2988225383 Bacteria 7221625
180 2996636785 2996632988 Bacteria 6921523
181 8001784976 8001781756 Bacteria 9586736
182 8002317596 8002317523 Bacteria 8051857
183 8008487633 8008485437 Bacteria 7198341
184 8008489321 8008485437 Bacteria 7198341
185 8025526848 8025524527 Bacteria 7197316
186 8025528200 8025524527 Bacteria 7197316
187 Ga0495614_0002230
188 JGI25162J39368_1005580
189 Ga0070674_100309649
190 Ga0070714_100002307
191 Ga0070714_100008799
192 Ga0070713_100033504
193 Ga0068856_100189604
194 Ga0081455_10000167
195 Ga0081455_10025027
196 Ga0081455_10037441
197 Ga0081540_1047960
198 Ga0070717_10088202
199 Ga0075431_100001579
200 Ga0111539_10377850
201 Ga0114129_10192146
202 Ga0157369_10015649
203 Ga0209566_104018
204 Ga0209437_101071
205 Ga0207426_1011829
206 Ga0207664_10003037
207 Ga0207664_10004446
208 Ga0207669_10261568
209 Ga0307515_10057323
210 Ga0307515_10067819
211 Ga0307512_10015643
212 Ga0307509_10088576
213 Ga0307408_100010738
214 Ga0307514_10028227
215 Ga0307405_10202875
216 Ga0307410_10050592
217 Ga0307406_10067318
218 Ga0307412_10013469
219 Ga0307416_100012979
220 Ga0307411_10033793
221 Ga0451791_0540595
222 Ga0466969_0036626
223 Ga0466972_0005987
224 Ga0466966_0017092
225 Ga0466961_0054043
226 Ga0466959_0018355
227 Ga0466958_0260628
228 Ga0466967_0177666
229 Ga0495592_0000011
230 Ga0495592_0054362
231 Ga0495603_0002050
232 Ga0495603_0002886
233 Ga0495603_0014800
234 Ga0495603_0024371
235 Ga0495629_0000507
236 Ga0495629_0000540
237 Ga0495629_0001427
238 Ga0495629_0005666
239 Ga0495651_0000994
240 Ga0495653_0000683
241 Ga0495662_0000263
242 Ga0495662_0164261
243 Ga0495664_0000244
244 Ga0495585_0047561
245 Ga0495594_0000225
246 Ga0495594_0004052
247 Ga0495594_0007897
248 Ga0495608_0032060
249 Ga0495628_0000064
250 Ga0495630_0000035
251 Ga0495666_0000662
252 Ga0495652_0003654
253 Ga0495654_0058534
254 Ga0495640_0016876
255 Ga0495587_0000064
256 Ga0495609_0091887
257 Ga0495645_0000042
258 Ga0495622_0025080
259 Ga0495622_0027399
260 Ga0495622_0031843
261 Ga0495667_0000227
262 Ga0495634_0000148
263 Ga0495611_0017177
264 Ga0495625_0040744
265 Ga0495588_0012593
266 Ga0495588_0088459
267 Ga0495657_0032086
268 Ga0495599_0000044
269 Ga0495623_0000862
270 Ga0495646_0000028
271 Ga0495613_0008921
272 Ga0495613_0029131
273 Ga0495589_0019154
274 Ga0495600_0001063
275 Ga0495581_0157226
276 Ga0495604_0000542
277 Ga0495674_0000036
278 Ga0495676_0001527
279 Ga0495676_0002024
280 Ga0495676_0008642
281 Ga0495676_0020415
282 Ga0495687_073034
283 Ga0495675_0000464
284 Ga0495685_002459
285 Ga0495602_0000078
286 Ga0495614_0001672
287 Ga0495614_0006007
288 Ga0495614_0012303
289 Ga0496102_0061370
290 Ga0496106_0061221
291 Ga0496116_0026031
292 Ga0496116_0060738
293 Ga0496117_0006280
294 Ga0496118_0001331
295 Ga0496118_0170817
296 Ga0496119_0016403
297 Ga0496122_0009579
298 Ga0496123_0074767
299 Ga0496124_0000037
300 Ga0496124_0018617
301 Ga0496124_0159876
302 Ga0496126_0000878
303 Ga0501031_0080024
304 Ga0501032_0077380
305 Ga0501036_0090002
306 Ga0501037_0038225
307 Ga0501037_0057205
308 Ga0501038_0044328
309 Ga0501038_0181224
310 Ga0501046_0042329
311 Ga0501046_0128327
312 Ga0501047_0039872
313 Ga0501047_0041681
314 Ga0501047_0076306
315 Ga0501074_0047394
316 Ga0501083_0010985
317 Ga0501044_0068746
318 Ga0501044_0090270
319 nmdc:mga05p37_163371_c1
320 nmdc:mga06r32_21680_c1
321 Ga0495601_0117122
322 Ga0500579_140819
323 Ga0466962_0018632
324 2512732004
325 2585297110
326 2595320136
327 2643736344
328 2676473105
329 2676478262
330 2753300944
331 2753302319
332 2768647646
333 2808890963
334 2816420947
335 2819744639
336 2821113158
337 2827631653
338 2827633404
339 2832007070
340 2837268725
341 2862294942
342 2862576704
343 2862706117
344 2866070376
345 2867512743
346 2883825388
347 2885529656
348 2887446054
349 2889045334
350 2895443276
351 2904164926
352 2904492207
353 2912760706
354 2919161437
355 2925333270
356 2928105272
357 2928122155
358 2931388766
359 2945992660
360 2946039191
361 2946055407
362 2980182835
363 2980189583
364 2984554460
365 2988228968
366 2996636785
367 8001784976
368 8002317596
369 8008487633
370 8008489321
371 8025526848
372 8025528200

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

141

349

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4tqv-assembly4.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.8778 5 296
4tqu-assembly1.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.8738 5 296
4xtc-assembly1.cif.gz_M crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein 0.8689 2 300
4xtc-assembly1.cif.gz_M crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein 0.8661 2 300
4tqv-assembly4.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.8635 5 296
ID Description Score Start End Superfamily
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9216 53 296 1.10.3720.10
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9146 53 296 1.10.3720.10
af_P71896_49_286_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8739 53 301 1.10.3720.10
af_P71896_49_286_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8705 53 301 1.10.3720.10
af_I6XFF3_60_302_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.869 53 294 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A1Y3JGP8-F1-model_v4 deleted 0.9473 53 301
AF-A0A4Y7X0Y2-F1-model_v4 deleted 0.9384 35 301
AF-A0A7V6TTQ9-F1-model_v4 Sugar ABC transporter permease 0.9362 25 301 GO:0005886
GO:0055085
AF-A0A2R5EY57-F1-model_v4 Protein lplB 0.9335 39 301 GO:0005886
GO:0055085
AF-A0A1Y3JGP8-F1-model_v4 deleted 0.9329 53 301

Map