F285575

General Info

Members Datasets Scaffolds Average Seq Length
186 124 372 566

Family's Representative Sequence

Representative Sequence 3300005439|Ga0070711_100008205|Ga0070711_1000082054
Length 642
Sequence MPMTPLKRKFQIPSSKLQEKSQISVTTTQRVQSFGLGRSEIWNLESILDLVFGIFNVAPAAPRIITLNIGSQTVGLAEFRVQAHGGLVLLDYRLREISADPAGDPAGAGRRAQVALVLREMMDELQIKRGHVNYAVSAQSVFARFVKLPAVDEEKIEKIISFEAQQNVPFPIDEVTWDYQLVGGGIDGQIQVVLVAIKRDLLEEINSAVEETGVRTSIVDVAPMALYNAFRYSYSDLDGCSLLVDIGARTTNLLFIEAGKVFSRSLPVGGSSITAAIAKEFGEPFAAAESRKKRDGFVGLGGVYAEPADADVARVSKIARSVMTRLHAELMRSISHYRAQQNGSPPARVFLCGGSAGMRYMREFFIEKLHLPIEFFNPLRNVAATDPAPAAELANSAHRLGEVVGLALRSVSGCPMELSLLPASVVQTKELEKRRPFFIMAAACFILILLGWSAYYTRAAQVARQTTEILKEKNVTMRAVETRLDKLKREATSLDSIATPLITAINDRNFWPEILEDLNARLPESDIWITELAATSGGKLLGPTEKRAGAIAPAPPTEAKGKAVIASGPVIDGIMVRGLYLYNPKQQEIVLDYFRNLANSPFFIVDPKTPERVIRSNSVPNDAEWAFPYELQLTLRTPVKLP

Samples

Sample ID Description Type Environment
1 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
2 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
3 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
4 3300002155 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 Metagenome Rhizosphere
5 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
12 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
13 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
17 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
21 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
22 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
23 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
24 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
25 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
26 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
27 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
28 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
29 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
30 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
31 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
34 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
37 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
38 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
39 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
40 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
41 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
42 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
43 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
44 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
53 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
56 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
57 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
86 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
87 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
88 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
89 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
90 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
91 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
92 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
93 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
94 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
95 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
96 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
97 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
98 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
99 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
100 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
101 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
102 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
103 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
104 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
105 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
106 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
107 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
108 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
109 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
110 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
119 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
120 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
122 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
123 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
124 2786546548 Spartobacteria bacterium LR76 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.46
Metatranscriptomes 0
Isolates 0.54

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.54
Nodule 0
Rhizoplane 4.3
Rhizosphere 88.71
Stem 0
Stem Tuber 0
Unclassified 15.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070711_100008205 3300005439 Bacteria 6387
2 CNXas_1000229 3300000545 Bacteria 6982
3 JGI24743J22301_10000309 3300001991 Bacteria 5318
4 JGI24033J26618_1000056 3300002155 Bacteria 16320
5 JGI25406J46586_10000074 3300003203 Bacteria 45331
6 rootH2_10000605 3300003320 Bacteria 27930
7 rootH2_10112271 3300003320 Bacteria 10844
8 rootL2_10008913 3300003322 Bacteria 4273
9 rootL2_10092709 3300003322 Bacteria 6344
10 rootH1_10019677 3300003323 Bacteria 19809
11 Ga0065712_10078045 3300005290 Bacteria 3404
12 Ga0070658_10004880 3300005327 Bacteria 10927
13 Ga0070658_10009182 3300005327 Bacteria 7950
14 Ga0070676_10022147 3300005328 Unclassified 3562
15 Ga0070677_10013213 3300005333 Bacteria 2883
16 Ga0070687_100002424 3300005343 Bacteria 6980
17 Ga0070668_100003682 3300005347 Bacteria 11319
18 Ga0070669_100006453 3300005353 Bacteria 8446
19 Ga0070669_100029690 3300005353 Unclassified 3943
20 Ga0070675_100064694 3300005354 Bacteria 3023
21 Ga0070671_100034252 3300005355 Unclassified 4204
22 Ga0070659_100030023 3300005366 Unclassified 4205
23 Ga0070659_100050712 3300005366 Unclassified 3262
24 Ga0070667_100041202 3300005367 Bacteria 3874
25 Ga0070667_100045822 3300005367 Bacteria 3678
26 Ga0070709_10068921 3300005434 Bacteria 2277
27 Ga0070711_100003432 3300005439 Bacteria 9232
28 Ga0070711_100105928 3300005439 Bacteria 2055
29 Ga0070705_100017297 3300005440 Unclassified 3762
30 Ga0070694_100055737 3300005444 Bacteria 2682
31 Ga0070708_100010174 3300005445 Bacteria 7612
32 Ga0070708_100039701 3300005445 Bacteria 4119
33 Ga0070678_100045946 3300005456 Unclassified 3128
34 Ga0070662_100001690 3300005457 Bacteria 13569
35 Ga0070662_100036275 3300005457 Bacteria 3487
36 Ga0070706_100001701 3300005467 Bacteria 22906
37 Ga0070706_100003105 3300005467 Bacteria 16458
38 Ga0070706_100103512 3300005467 Bacteria 2646
39 Ga0070707_100001571 3300005468 Bacteria 22129
40 Ga0070707_100008597 3300005468 Bacteria 9483
41 Ga0070707_100010476 3300005468 Bacteria 8636
42 Ga0070707_100030882 3300005468 Bacteria 5102
43 Ga0070707_100033488 3300005468 Unclassified 4900
44 Ga0070707_100052949 3300005468 Bacteria 3891
45 Ga0070698_100003602 3300005471 Bacteria 17021
46 Ga0070698_100013072 3300005471 Bacteria 8788
47 Ga0070684_100005769 3300005535 Bacteria 9520
48 Ga0070697_100006661 3300005536 Bacteria 8958
49 Ga0070697_100023143 3300005536 Bacteria 4940
50 Ga0070697_100031329 3300005536 Unclassified 4277
51 Ga0070696_100044499 3300005546 Unclassified 3073
52 Ga0070665_100000055 3300005548 Bacteria 242706
53 Ga0070704_100007888 3300005549 Bacteria 6355
54 Ga0070704_100070400 3300005549 Bacteria 2538
55 Ga0068856_100000326 3300005614 Bacteria 52440
56 Ga0068863_100000314 3300005841 Bacteria 49103
57 Ga0068863_100048216 3300005841 Unclassified 4039
58 Ga0068858_100030173 3300005842 Bacteria 5036
59 Ga0068860_100000183 3300005843 Bacteria 100738
60 Ga0068862_100017491 3300005844 Bacteria 5971
61 Ga0081455_10063338 3300005937 Bacteria 3103
62 Ga0081540_1029851 3300005983 Bacteria 3030
63 Ga0081539_10000077 3300005985 Bacteria 228125
64 Ga0070717_10026534 3300006028 Unclassified 4620
65 Ga0070715_10012860 3300006163 Bacteria 3059
66 Ga0070712_100040065 3300006175 Bacteria 3209
67 Ga0105240_10016589 3300009093 Bacteria 9965
68 Ga0105240_10055050 3300009093 Bacteria 4982
69 Ga0114129_10103233 3300009147 Unclassified 3942
70 Ga0105237_10005574 3300009545 Bacteria 14199
71 Ga0105237_10045226 3300009545 Bacteria 4432
72 Ga0105249_10022690 3300009553 Bacteria 5624
73 Ga0157374_10000028 3300013296 Bacteria 213725
74 Ga0157374_10013297 3300013296 Bacteria 7182
75 Ga0157374_10178015 3300013296 Bacteria 2076
76 Ga0157378_10003098 3300013297 Bacteria 14779
77 Ga0157378_10026058 3300013297 Bacteria 5153
78 Ga0157378_10053594 3300013297 Unclassified 3591
79 Ga0157378_10057369 3300013297 Bacteria 3470
80 Ga0157378_10060272 3300013297 Bacteria 3387
81 Ga0157378_10065594 3300013297 Bacteria 3250
82 Ga0163162_10133594 3300013306 Bacteria 2592
83 Ga0157372_10031612 3300013307 Bacteria 5796
84 Ga0157375_10026551 3300013308 Bacteria 5399
85 Ga0157375_10047317 3300013308 Unclassified 4200
86 Ga0157375_10083739 3300013308 Unclassified 3235
87 Ga0157376_10001656 3300014969 Bacteria 14794
88 Ga0157376_10064831 3300014969 Bacteria 3082
89 Ga0163161_10003187 3300017792 Bacteria 11545
90 Ga0213876_10003509 3300021384 Bacteria 8951
91 Ga0207697_10002009 3300025315 Bacteria 10774
92 Ga0207697_10010165 3300025315 Unclassified 4034
93 Ga0207688_10003432 3300025901 Bacteria 8641
94 Ga0207647_10022114 3300025904 Bacteria 4230
95 Ga0207645_10002315 3300025907 Bacteria 15057
96 Ga0207645_10004839 3300025907 Bacteria 9888
97 Ga0207645_10027002 3300025907 Unclassified 3710
98 Ga0207705_10008691 3300025909 Bacteria 7399
99 Ga0207684_10000134 3300025910 Bacteria 133720
100 Ga0207684_10012885 3300025910 Bacteria 7240
101 Ga0207684_10015193 3300025910 Bacteria 6632
102 Ga0207695_10028340 3300025913 Bacteria 6215
103 Ga0207671_10003083 3300025914 Bacteria 17008
104 Ga0207671_10026844 3300025914 Bacteria 4308
105 Ga0207693_10001844 3300025915 Bacteria 18562
106 Ga0207693_10034772 3300025915 Bacteria 3974
107 Ga0207693_10053121 3300025915 Bacteria 3179
108 Ga0207663_10002859 3300025916 Bacteria 8344
109 Ga0207663_10025389 3300025916 Bacteria 3425
110 Ga0207662_10008321 3300025918 Bacteria 5679
111 Ga0207646_10000815 3300025922 Bacteria 40524
112 Ga0207646_10003089 3300025922 Bacteria 19147
113 Ga0207646_10020729 3300025922 Bacteria 6086
114 Ga0207646_10024845 3300025922 Bacteria 5484
115 Ga0207646_10027993 3300025922 Bacteria 5136
116 Ga0207646_10071283 3300025922 Unclassified 3103
117 Ga0207681_10019947 3300025923 Bacteria 4245
118 Ga0207644_10024658 3300025931 Bacteria 4130
119 Ga0207644_10068015 3300025931 Unclassified 2598
120 Ga0207690_10037997 3300025932 Unclassified 3130
121 Ga0207706_10002608 3300025933 Bacteria 17551
122 Ga0207706_10015423 3300025933 Bacteria 6903
123 Ga0207665_10018450 3300025939 Bacteria 4584
124 Ga0207691_10007268 3300025940 Bacteria 10681
125 Ga0207712_10038090 3300025961 Bacteria 3286
126 Ga0207668_10013044 3300025972 Bacteria 5105
127 Ga0207658_10014730 3300025986 Bacteria 5358
128 Ga0207658_10057550 3300025986 Bacteria 2889
129 Ga0207703_10030920 3300026035 Bacteria 4232
130 Ga0207702_10001037 3300026078 Bacteria 28458
131 Ga0207641_10003726 3300026088 Bacteria 13406
132 Ga0207641_10015806 3300026088 Bacteria 6182
133 Ga0207683_10024161 3300026121 Bacteria 5231
134 Ga0207683_10039709 3300026121 Bacteria 4106
135 Ga0207683_10059456 3300026121 Bacteria 3357
136 Ga0268266_10000027 3300028379 Bacteria 426852
137 Ga0268265_10057860 3300028380 Bacteria 2957
138 Ga0268264_10000545 3300028381 Bacteria 47296
139 Ga0307511_10000583 3300030521 Bacteria 39039
140 Ga0307513_10029185 3300031456 Bacteria 6292
141 Ga0373944_0025761 3300035089 Bacteria 1733
142 Ga0373935_0027856 3300035692 Unclassified 3492
143 Ga0373927_0047620 3300035695 Unclassified 2773
144 Ga0373947_0104366 3300035725 Unclassified 1784
145 Ga0395899_0000349 3300037312 Bacteria 56957
146 Ga0395900_0012151 3300037418 Bacteria 8800
147 Ga0395898_0000026 3300037466 Bacteria 374440
148 Ga0436365_1235436 3300039437 Bacteria 8177
149 Ga0436365_1722583 3300039437 Bacteria 40439
150 Ga0451577_0004081 3300042876 Bacteria 15692
151 Ga0451577_0153389 3300042876 Bacteria 2073
152 Ga0466971_0000097 3300044719 Bacteria 31999
153 Ga0466957_0012623 3300044842 Bacteria 4892
154 Ga0466957_0037966 3300044842 Unclassified 2901
155 Ga0451576_0009503 3300045051 Bacteria 11269
156 Ga0451576_0097286 3300045051 Bacteria 3061
157 Ga0495643_0000191 3300046522 Bacteria 97250
158 Ga0495598_0003107 3300046537 Bacteria 3497
159 Ga0495659_0022582 3300046664 Unclassified 2131
160 Ga0496100_0044372 3300048903 Bacteria 2847
161 Ga0496101_0005891 3300048904 Bacteria 7848
162 Ga0496102_0018598 3300048905 Bacteria 6109
163 Ga0496102_0125300 3300048905 Unclassified 2401
164 Ga0496106_0005909 3300048909 Bacteria 9046
165 Ga0496107_0020862 3300048910 Bacteria 4631
166 Ga0496112_0115979 3300048915 Bacteria 2648
167 Ga0496115_0005228 3300048918 Bacteria 9433
168 Ga0496125_0000017 3300048928 Bacteria 508217
169 Ga0501031_0001270 3300049568 Bacteria 15460
170 Ga0501032_0000966 3300049569 Bacteria 23261
171 Ga0501032_0039300 3300049569 Bacteria 3219
172 Ga0501033_0000010 3300049570 Bacteria 270511
173 Ga0501033_0000178 3300049570 Bacteria 60611
174 Ga0501037_0000355 3300049573 Bacteria 38577
175 Ga0501038_0001173 3300049574 Bacteria 23798
176 Ga0501038_0002296 3300049574 Bacteria 17782
177 Ga0501039_0015852 3300049575 Bacteria 5770
178 Ga0501043_0007987 3300049579 Bacteria 8356
179 Ga0501047_0006907 3300049581 Bacteria 10663
180 Ga0501070_0003862 3300049586 Bacteria 12922
181 Ga0501083_0073470 3300049744 Unclassified 2273
182 Ga0501035_0000024 3300049822 Bacteria 206692
183 Ga0501044_0006077 3300049823 Bacteria 13322
184 Ga0500556_0003156 3300053104 Bacteria 4910
185 Ga0466962_0000033 3300061719 Bacteria 64574
186 2787508039 2786546548 Bacteria 4745694
187 Ga0070711_100008205
188 CNXas_1000229
189 JGI24743J22301_10000309
190 JGI24033J26618_1000056
191 JGI25406J46586_10000074
192 rootH2_10000605
193 rootH2_10112271
194 rootL2_10008913
195 rootL2_10092709
196 rootH1_10019677
197 Ga0065712_10078045
198 Ga0070658_10004880
199 Ga0070658_10009182
200 Ga0070676_10022147
201 Ga0070677_10013213
202 Ga0070687_100002424
203 Ga0070668_100003682
204 Ga0070669_100006453
205 Ga0070669_100029690
206 Ga0070675_100064694
207 Ga0070671_100034252
208 Ga0070659_100030023
209 Ga0070659_100050712
210 Ga0070667_100041202
211 Ga0070667_100045822
212 Ga0070709_10068921
213 Ga0070711_100003432
214 Ga0070711_100105928
215 Ga0070705_100017297
216 Ga0070694_100055737
217 Ga0070708_100010174
218 Ga0070708_100039701
219 Ga0070678_100045946
220 Ga0070662_100001690
221 Ga0070662_100036275
222 Ga0070706_100001701
223 Ga0070706_100003105
224 Ga0070706_100103512
225 Ga0070707_100001571
226 Ga0070707_100008597
227 Ga0070707_100010476
228 Ga0070707_100030882
229 Ga0070707_100033488
230 Ga0070707_100052949
231 Ga0070698_100003602
232 Ga0070698_100013072
233 Ga0070684_100005769
234 Ga0070697_100006661
235 Ga0070697_100023143
236 Ga0070697_100031329
237 Ga0070696_100044499
238 Ga0070665_100000055
239 Ga0070704_100007888
240 Ga0070704_100070400
241 Ga0068856_100000326
242 Ga0068863_100000314
243 Ga0068863_100048216
244 Ga0068858_100030173
245 Ga0068860_100000183
246 Ga0068862_100017491
247 Ga0081455_10063338
248 Ga0081540_1029851
249 Ga0081539_10000077
250 Ga0070717_10026534
251 Ga0070715_10012860
252 Ga0070712_100040065
253 Ga0105240_10016589
254 Ga0105240_10055050
255 Ga0114129_10103233
256 Ga0105237_10005574
257 Ga0105237_10045226
258 Ga0105249_10022690
259 Ga0157374_10000028
260 Ga0157374_10013297
261 Ga0157374_10178015
262 Ga0157378_10003098
263 Ga0157378_10026058
264 Ga0157378_10053594
265 Ga0157378_10057369
266 Ga0157378_10060272
267 Ga0157378_10065594
268 Ga0163162_10133594
269 Ga0157372_10031612
270 Ga0157375_10026551
271 Ga0157375_10047317
272 Ga0157375_10083739
273 Ga0157376_10001656
274 Ga0157376_10064831
275 Ga0163161_10003187
276 Ga0213876_10003509
277 Ga0207697_10002009
278 Ga0207697_10010165
279 Ga0207688_10003432
280 Ga0207647_10022114
281 Ga0207645_10002315
282 Ga0207645_10004839
283 Ga0207645_10027002
284 Ga0207705_10008691
285 Ga0207684_10000134
286 Ga0207684_10012885
287 Ga0207684_10015193
288 Ga0207695_10028340
289 Ga0207671_10003083
290 Ga0207671_10026844
291 Ga0207693_10001844
292 Ga0207693_10034772
293 Ga0207693_10053121
294 Ga0207663_10002859
295 Ga0207663_10025389
296 Ga0207662_10008321
297 Ga0207646_10000815
298 Ga0207646_10003089
299 Ga0207646_10020729
300 Ga0207646_10024845
301 Ga0207646_10027993
302 Ga0207646_10071283
303 Ga0207681_10019947
304 Ga0207644_10024658
305 Ga0207644_10068015
306 Ga0207690_10037997
307 Ga0207706_10002608
308 Ga0207706_10015423
309 Ga0207665_10018450
310 Ga0207691_10007268
311 Ga0207712_10038090
312 Ga0207668_10013044
313 Ga0207658_10014730
314 Ga0207658_10057550
315 Ga0207703_10030920
316 Ga0207702_10001037
317 Ga0207641_10003726
318 Ga0207641_10015806
319 Ga0207683_10024161
320 Ga0207683_10039709
321 Ga0207683_10059456
322 Ga0268266_10000027
323 Ga0268265_10057860
324 Ga0268264_10000545
325 Ga0307511_10000583
326 Ga0307513_10029185
327 Ga0373944_0025761
328 Ga0373935_0027856
329 Ga0373927_0047620
330 Ga0373947_0104366
331 Ga0395899_0000349
332 Ga0395900_0012151
333 Ga0395898_0000026
334 Ga0436365_1235436
335 Ga0436365_1722583
336 Ga0451577_0004081
337 Ga0451577_0153389
338 Ga0466971_0000097
339 Ga0466957_0012623
340 Ga0466957_0037966
341 Ga0451576_0009503
342 Ga0451576_0097286
343 Ga0495643_0000191
344 Ga0495598_0003107
345 Ga0495659_0022582
346 Ga0496100_0044372
347 Ga0496101_0005891
348 Ga0496102_0018598
349 Ga0496102_0125300
350 Ga0496106_0005909
351 Ga0496107_0020862
352 Ga0496112_0115979
353 Ga0496115_0005228
354 Ga0496125_0000017
355 Ga0501031_0001270
356 Ga0501032_0000966
357 Ga0501032_0039300
358 Ga0501033_0000010
359 Ga0501033_0000178
360 Ga0501037_0000355
361 Ga0501038_0001173
362 Ga0501038_0002296
363 Ga0501039_0015852
364 Ga0501043_0007987
365 Ga0501047_0006907
366 Ga0501070_0003862
367 Ga0501083_0073470
368 Ga0501035_0000024
369 Ga0501044_0006077
370 Ga0500556_0003156
371 Ga0466962_0000033
372 2787508039

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF11104

PilM_2

Type IV pilus assembly protein PilM;

66

411

0.89

PF14450

FtsA

Cell division protein FtsA

242

394

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ych-assembly1.cif.gz_A pilm-piln type iv pilus biogenesis complex 0.8759 3 353
2ych-assembly1.cif.gz_A pilm-piln type iv pilus biogenesis complex 0.8734 3 353
3jc8-assembly1.cif.gz_Ma architectural model of the type iva pilus machine in a piliated state 0.8538 4 352
3jc8-assembly1.cif.gz_Ma architectural model of the type iva pilus machine in a piliated state 0.838 4 352
5eou-assembly2.cif.gz_B pseudomonas aeruginosa pilm:piln1-12 bound to atp 0.8325 5 362
ID Description Score Start End Superfamily
2ychA03 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9235 178 314 3.30.420.40
af_P0ABH0_1_81_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9192 2 39 3.30.420.40
2ychA03 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.8948 178 314 3.30.420.40
3wqtB02 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.8729 180 316 3.30.420.40
af_P77277_141_250_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.8704 184 314 3.30.420.40
ID Description Score Start End GO Terms
AF-A0A3E1DYJ6-F1-model_v4 Type IV pilus assembly protein PilM 0.9659 3 232
AF-A0A3E1DYJ6-F1-model_v4 Type IV pilus assembly protein PilM 0.9537 3 232
AF-A0A6N6Q3J0-F1-model_v4 Type IV pilus assembly protein PilM 0.9521 1 325
AF-A0A2V5RZ73-F1-model_v4 Type IV pilus assembly protein PilM 0.9493 1 349
AF-A0A6N6Q3J0-F1-model_v4 Type IV pilus assembly protein PilM 0.9492 1 325

Map