F284833

General Info

Members Datasets Scaffolds Average Seq Length
185 134 370 375

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0117085|Ga0466967_0117085_726_1847
Length 365
Sequence MTEAILVLEDGRTFTGSAYGAVGEAFGEAVFTTAMTGYQETLTDPSYHRQVVVQTAPQIGNTGVNDEDDESARIWVAAYVVRDPAPRPSNWRATGTLEDRLAAEGVVGISGVDTRALTRHLRSRGAMRAGVSSLDSDPAALLERVRSAPQMLGADLSAEVTTSDRYTVAAVGADLGIKRNVSRRLAQRGVTTHIFPATATVEDLLAVSPDAVFLSPGPGDPATADGPVALAREVLGRRVPLFGICFGSQILGRALGFGTYKLGYGHRGINQPVYDRTTGKVEVTSHNHGFAVDAPLNTVIDTDFGGVEVSHVCLNDNVVEGLRARDVPAFTVQYHPEAAAGPHDADYLFDRFVELVEGRPHAETH

Samples

Sample ID Description Type Environment
1 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
12 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
13 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
14 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
15 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
18 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
26 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
27 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
28 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
38 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
39 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
40 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
41 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
42 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
43 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
44 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
45 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
46 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
47 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
48 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
49 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
50 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
51 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
52 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
53 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
54 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
55 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
56 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
61 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
62 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
63 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
64 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
65 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
66 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
67 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
68 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
69 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
70 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
71 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
72 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
78 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
79 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
80 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
81 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
82 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
83 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
84 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
85 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
86 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
87 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
88 2501939600 Micromonospora sp. L5 Isolate Unclassified
89 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
90 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
91 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
92 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
93 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
94 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
95 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
96 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
97 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
98 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
99 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
100 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
101 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
102 2855683550 Micromonospora sp. RP3T Isolate Unclassified
103 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
104 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
105 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
106 2858868258 Micromonospora sp. MH33 Isolate Unclassified
107 2858882152 Micromonospora noduli MED15 Isolate Nodule
108 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
109 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
110 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
111 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
112 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
113 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
114 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
115 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
116 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
117 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
118 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
119 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
120 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
121 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
122 2902582711 Micromonospora sp. AP08 Isolate Unclassified
123 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
124 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
125 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
126 649633069 Micromonospora sp. L5 Isolate Unclassified
127 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
128 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
129 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
130 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
131 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
132 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
133 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
134 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 74.59
Metatranscriptomes 0
Isolates 25.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.7
Nodule 3.24
Rhizoplane 3.24
Rhizosphere 67.03
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466967_0117085 3300045976 Bacteria 2456
2 JGI25406J46586_10023888 3300003203 Bacteria 2407
3 Ga0070683_100305409 3300005329 Bacteria 1514
4 Ga0070683_100334185 3300005329 Bacteria 1443
5 Ga0070682_100133539 3300005337 Bacteria 1683
6 Ga0070660_100079316 3300005339 Bacteria 2576
7 Ga0070661_100006348 3300005344 Bacteria 8153
8 Ga0070668_100057605 3300005347 Bacteria 3003
9 Ga0070667_100163391 3300005367 Bacteria 1962
10 Ga0070713_100222463 3300005436 Bacteria 1713
11 Ga0070684_100209964 3300005535 Bacteria 1774
12 Ga0070664_100372754 3300005564 Bacteria 1302
13 Ga0068864_100009241 3300005618 Bacteria 8128
14 Ga0068864_100311497 3300005618 Bacteria 1476
15 Ga0068858_100045655 3300005842 Bacteria 4061
16 Ga0081540_1003775 3300005983 Bacteria 11859
17 Ga0081539_10000873 3300005985 Bacteria 57852
18 Ga0081539_10001767 3300005985 Bacteria 34451
19 Ga0081539_10006066 3300005985 Bacteria 11820
20 Ga0081539_10056403 3300005985 Bacteria 2180
21 Ga0075364_10116313 3300006051 Bacteria 1787
22 Ga0075428_100000548 3300006844 Bacteria 38376
23 Ga0075428_100055552 3300006844 Bacteria 4338
24 Ga0075428_100074209 3300006844 Bacteria 3716
25 Ga0075430_100002154 3300006846 Bacteria 16297
26 Ga0075430_100044805 3300006846 Bacteria 3739
27 Ga0075431_100008384 3300006847 Bacteria 10340
28 Ga0075431_100029946 3300006847 Bacteria 5605
29 Ga0075431_100088523 3300006847 Bacteria 3195
30 Ga0075431_100123649 3300006847 Bacteria 2669
31 Ga0075431_100347021 3300006847 Bacteria 1493
32 Ga0075429_100004899 3300006880 Bacteria 11536
33 Ga0075429_100011424 3300006880 Bacteria 7693
34 Ga0075429_100047374 3300006880 Bacteria 3739
35 Ga0105247_10159075 3300009101 Bacteria 1494
36 Ga0114129_10000130 3300009147 Bacteria 77049
37 Ga0114129_10004855 3300009147 Bacteria 18971
38 Ga0114129_10007033 3300009147 Bacteria 16019
39 Ga0114129_10038292 3300009147 Bacteria 6765
40 Ga0114129_10735927 3300009147 Bacteria 1264
41 Ga0105248_10021295 3300009177 Bacteria 7184
42 Ga0157369_10020802 3300013105 Bacteria 7334
43 Ga0157372_10227098 3300013307 Bacteria 2164
44 Ga0157375_10207805 3300013308 Bacteria 2114
45 Ga0157379_10121562 3300014968 Bacteria 2349
46 Ga0157379_10132948 3300014968 Bacteria 2240
47 Ga0207657_10087388 3300025919 Bacteria 2608
48 Ga0207652_10112302 3300025921 Bacteria 2418
49 Ga0207700_10183732 3300025928 Bacteria 1753
50 Ga0207664_10143297 3300025929 Bacteria 2024
51 Ga0207661_10001170 3300025944 Bacteria 17529
52 Ga0207668_10001017 3300025972 Bacteria 16785
53 Ga0207668_10063747 3300025972 Bacteria 2601
54 Ga0207674_10073985 3300026116 Bacteria 3420
55 Ga0207674_10193978 3300026116 Bacteria 1981
56 Ga0268266_10014106 3300028379 Bacteria 6880
57 Ga0268265_10123926 3300028380 Bacteria 2135
58 Ga0307515_10026197 3300028794 Bacteria 10048
59 Ga0307515_10029993 3300028794 Bacteria 9163
60 Ga0307512_10008433 3300030522 Bacteria 10048
61 Ga0307512_10018842 3300030522 Bacteria 6299
62 Ga0307512_10051785 3300030522 Bacteria 3281
63 Ga0307513_10005460 3300031456 Bacteria 16794
64 Ga0307513_10164981 3300031456 Bacteria 2101
65 Ga0307513_10225191 3300031456 Bacteria 1693
66 Ga0307509_10019235 3300031507 Bacteria 7797
67 Ga0307509_10056474 3300031507 Bacteria 4167
68 Ga0307508_10001109 3300031616 Bacteria 31161
69 Ga0307508_10098142 3300031616 Bacteria 2522
70 Ga0307516_10000395 3300031730 Bacteria 56947
71 Ga0307516_10013998 3300031730 Bacteria 8507
72 Ga0307516_10025741 3300031730 Bacteria 5987
73 Ga0307516_10070602 3300031730 Bacteria 3355
74 Ga0307413_10021223 3300031824 Bacteria 3472
75 Ga0307410_10134975 3300031852 Bacteria 1818
76 Ga0307406_10003320 3300031901 Bacteria 8773
77 Ga0307406_10009559 3300031901 Bacteria 5444
78 Ga0307407_10027843 3300031903 Bacteria 3013
79 Ga0307409_100000105 3300031995 Bacteria 30290
80 Ga0307409_100005695 3300031995 Bacteria 7217
81 Ga0307409_100035372 3300031995 Bacteria 3660
82 Ga0307409_100055278 3300031995 Bacteria 3064
83 Ga0307409_100174984 3300031995 Bacteria 1893
84 Ga0307416_100001135 3300032002 Bacteria 14305
85 Ga0307416_100052240 3300032002 Bacteria 3271
86 Ga0307411_10178959 3300032005 Bacteria 1607
87 Ga0307415_100000023 3300032126 Bacteria 64440
88 Ga0307415_100021642 3300032126 Bacteria 3957
89 Ga0307415_100097785 3300032126 Bacteria 2144
90 Ga0307415_100188172 3300032126 Bacteria 1626
91 Ga0373940_0000878 3300035088 Bacteria 5057
92 Ga0373951_0000131 3300035091 Bacteria 28404
93 Ga0373955_0042214 3300035172 Bacteria 2448
94 Ga0373942_0000323 3300035207 Bacteria 13019
95 Ga0373962_0000247 3300035242 Bacteria 11498
96 Ga0373935_0019662 3300035692 Bacteria 4117
97 Ga0395899_0038815 3300037312 Bacteria 3565
98 Ga0395900_0020059 3300037418 Bacteria 6817
99 Ga0395898_0022567 3300037466 Bacteria 6373
100 Ga0395905_0018472 3300037471 Bacteria 6617
101 Ga0439465_0052260 3300041413 Bacteria 1341
102 Ga0495594_0020771 3300046499 Bacteria 3500
103 Ga0495606_0005120 3300046507 Bacteria 12729
104 Ga0495632_0071894 3300046519 Bacteria 1661
105 Ga0495668_0000477 3300046616 Bacteria 50176
106 Ga0495625_0000969 3300046660 Bacteria 38144
107 Ga0495626_0000234 3300048091 Bacteria 65050
108 Ga0496104_0155719 3300048907 Bacteria 2193
109 Ga0496108_0010524 3300048911 Bacteria 7514
110 Ga0496109_0007699 3300048912 Bacteria 9129
111 Ga0496112_0011266 3300048915 Bacteria 8156
112 Ga0496112_0020831 3300048915 Bacteria 6222
113 Ga0496112_0055348 3300048915 Bacteria 3900
114 Ga0501038_0094090 3300049574 Bacteria 2505
115 Ga0501039_0023259 3300049575 Bacteria 4756
116 Ga0501040_0030713 3300049576 Bacteria 3630
117 Ga0501043_0036255 3300049579 Bacteria 3879
118 Ga0501046_0040814 3300049580 Bacteria 3707
119 Ga0501074_0036627 3300049590 Bacteria 3554
120 Ga0501044_0186961 3300049823 Bacteria 2036
121 nmdc:mga05p37_12424_c1 3300050507 Bacteria 10169
122 nmdc:mga05p37_3914_c1 3300050507 Bacteria 17434
123 nmdc:mga05p37_635379_c1 3300050507 Bacteria 1198
124 nmdc:mga05p37_7864_c1 3300050507 Bacteria 12588
125 nmdc:mga05p37_80677_c1 3300050507 Bacteria 4008
126 nmdc:mga09592_11298_c1 3300050508 Bacteria 7264
127 nmdc:mga09592_1805_c1 3300050508 Bacteria 9814
128 nmdc:mga0qj67_1059_c2 3300050509 Bacteria 10340
129 nmdc:mga0qj67_1440_c1 3300050509 Bacteria 16662
130 nmdc:mga06r32_1833_c2 3300050510 Bacteria 17582
131 nmdc:mga06r32_22545_c1 3300050510 Bacteria 5822
132 nmdc:mga06r32_49282_c1 3300050510 Bacteria 4028
133 nmdc:mga06r32_637167_c1 3300050510 Bacteria 1035
134 Ga0495619_0039904 3300053085 Bacteria 3066
135 Ga0500644_0013812 3300053088 Bacteria 2264
136 Ga0500646_0000160 3300053090 Bacteria 19918
137 Ga0500654_049780 3300053099 Bacteria 2269
138 Ga0500652_010818 3300053131 Bacteria 3143
139 2501942781 2501939600 Bacteria 6907073
140 2515494873 2515154088 Bacteria 5526283
141 2515718877 2515154129 Bacteria 5584369
142 2515755536 2515154137 Bacteria 5711575
143 2516083089 2515154202 Bacteria 5471270
144 2516090175 2515154203 Bacteria 5458536
145 2623587979 2622736626 Bacteria 7181580
146 2676487081 2675903059 Bacteria 8644972
147 2753268978 2751185782 Bacteria 11227053
148 2772643612 2772190715 Bacteria 6959372
149 2831936651 2831935698 Bacteria 5963223
150 2832008496 2832004796 Bacteria 6538017
151 2855675220 2855670206 Bacteria 7120389
152 2855681998 2855676851 Bacteria 7063653
153 2855686826 2855683550 Bacteria 7134265
154 2856862005 2856858025 Bacteria 7255264
155 2857292904 2857288857 Bacteria 7189066
156 2858850051 2858848962 Bacteria 6963058
157 2858874856 2858868258 Bacteria 7683772
158 2858883436 2858882152 Bacteria 7230291
159 2858893819 2858888857 Bacteria 7060307
160 2858899383 2858895516 Bacteria 7378898
161 2858907800 2858902515 Bacteria 7086037
162 2866067614 2866065130 Bacteria 6518152
163 2867307822 2867302475 Bacteria 7087181
164 2867319137 2867312974 Bacteria 7058875
165 2867320142 2867319477 Bacteria 7069771
166 2867508600 2867507094 Bacteria 6506033
167 2869054816 2869048445 Bacteria 6875584
168 2869066654 2869061728 Bacteria 7112407
169 2869074109 2869068681 Bacteria 7205615
170 2880492081 2880489317 Bacteria 7096270
171 2880500217 2880495981 Bacteria 7340502
172 2887486844 2887478801 Bacteria 8972725
173 2902586699 2902582711 Bacteria 6187705
174 2929222110 2929219909 Bacteria 6984360
175 2929228768 2929226422 Bacteria 7248583
176 2996227934 2996221748 Bacteria 6799777
177 649812605 649633069 Bacteria 6962533
178 8001786827 8001781756 Bacteria 9586736
179 8003837095 8003830390 Bacteria 6541657
180 8003857240 8003856774 Bacteria 7675274
181 8003875663 8003870546 Bacteria 7396674
182 8054707116 8054704163 Bacteria 7247792
183 8054731797 8054727385 Bacteria 7558670
184 8054738353 8054734606 Bacteria 6947278
185 8055413694 8055412473 Bacteria 6257500
186 Ga0466967_0117085
187 JGI25406J46586_10023888
188 Ga0070683_100305409
189 Ga0070683_100334185
190 Ga0070682_100133539
191 Ga0070660_100079316
192 Ga0070661_100006348
193 Ga0070668_100057605
194 Ga0070667_100163391
195 Ga0070713_100222463
196 Ga0070684_100209964
197 Ga0070664_100372754
198 Ga0068864_100009241
199 Ga0068864_100311497
200 Ga0068858_100045655
201 Ga0081540_1003775
202 Ga0081539_10000873
203 Ga0081539_10001767
204 Ga0081539_10006066
205 Ga0081539_10056403
206 Ga0075364_10116313
207 Ga0075428_100000548
208 Ga0075428_100055552
209 Ga0075428_100074209
210 Ga0075430_100002154
211 Ga0075430_100044805
212 Ga0075431_100008384
213 Ga0075431_100029946
214 Ga0075431_100088523
215 Ga0075431_100123649
216 Ga0075431_100347021
217 Ga0075429_100004899
218 Ga0075429_100011424
219 Ga0075429_100047374
220 Ga0105247_10159075
221 Ga0114129_10000130
222 Ga0114129_10004855
223 Ga0114129_10007033
224 Ga0114129_10038292
225 Ga0114129_10735927
226 Ga0105248_10021295
227 Ga0157369_10020802
228 Ga0157372_10227098
229 Ga0157375_10207805
230 Ga0157379_10121562
231 Ga0157379_10132948
232 Ga0207657_10087388
233 Ga0207652_10112302
234 Ga0207700_10183732
235 Ga0207664_10143297
236 Ga0207661_10001170
237 Ga0207668_10001017
238 Ga0207668_10063747
239 Ga0207674_10073985
240 Ga0207674_10193978
241 Ga0268266_10014106
242 Ga0268265_10123926
243 Ga0307515_10026197
244 Ga0307515_10029993
245 Ga0307512_10008433
246 Ga0307512_10018842
247 Ga0307512_10051785
248 Ga0307513_10005460
249 Ga0307513_10164981
250 Ga0307513_10225191
251 Ga0307509_10019235
252 Ga0307509_10056474
253 Ga0307508_10001109
254 Ga0307508_10098142
255 Ga0307516_10000395
256 Ga0307516_10013998
257 Ga0307516_10025741
258 Ga0307516_10070602
259 Ga0307413_10021223
260 Ga0307410_10134975
261 Ga0307406_10003320
262 Ga0307406_10009559
263 Ga0307407_10027843
264 Ga0307409_100000105
265 Ga0307409_100005695
266 Ga0307409_100035372
267 Ga0307409_100055278
268 Ga0307409_100174984
269 Ga0307416_100001135
270 Ga0307416_100052240
271 Ga0307411_10178959
272 Ga0307415_100000023
273 Ga0307415_100021642
274 Ga0307415_100097785
275 Ga0307415_100188172
276 Ga0373940_0000878
277 Ga0373951_0000131
278 Ga0373955_0042214
279 Ga0373942_0000323
280 Ga0373962_0000247
281 Ga0373935_0019662
282 Ga0395899_0038815
283 Ga0395900_0020059
284 Ga0395898_0022567
285 Ga0395905_0018472
286 Ga0439465_0052260
287 Ga0495594_0020771
288 Ga0495606_0005120
289 Ga0495632_0071894
290 Ga0495668_0000477
291 Ga0495625_0000969
292 Ga0495626_0000234
293 Ga0496104_0155719
294 Ga0496108_0010524
295 Ga0496109_0007699
296 Ga0496112_0011266
297 Ga0496112_0020831
298 Ga0496112_0055348
299 Ga0501038_0094090
300 Ga0501039_0023259
301 Ga0501040_0030713
302 Ga0501043_0036255
303 Ga0501046_0040814
304 Ga0501074_0036627
305 Ga0501044_0186961
306 nmdc:mga05p37_12424_c1
307 nmdc:mga05p37_3914_c1
308 nmdc:mga05p37_635379_c1
309 nmdc:mga05p37_7864_c1
310 nmdc:mga05p37_80677_c1
311 nmdc:mga09592_11298_c1
312 nmdc:mga09592_1805_c1
313 nmdc:mga0qj67_1059_c2
314 nmdc:mga0qj67_1440_c1
315 nmdc:mga06r32_1833_c2
316 nmdc:mga06r32_22545_c1
317 nmdc:mga06r32_49282_c1
318 nmdc:mga06r32_637167_c1
319 Ga0495619_0039904
320 Ga0500644_0013812
321 Ga0500646_0000160
322 Ga0500654_049780
323 Ga0500652_010818
324 2501942781
325 2515494873
326 2515718877
327 2515755536
328 2516083089
329 2516090175
330 2623587979
331 2676487081
332 2753268978
333 2772643612
334 2831936651
335 2832008496
336 2855675220
337 2855681998
338 2855686826
339 2856862005
340 2857292904
341 2858850051
342 2858874856
343 2858883436
344 2858893819
345 2858899383
346 2858907800
347 2866067614
348 2867307822
349 2867319137
350 2867320142
351 2867508600
352 2869054816
353 2869066654
354 2869074109
355 2880492081
356 2880500217
357 2887486844
358 2902586699
359 2929222110
360 2929228768
361 2996227934
362 649812605
363 8001786827
364 8003837095
365 8003857240
366 8003875663
367 8054707116
368 8054731797
369 8054738353
370 8055413694

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00988

CPSase_sm_chain

Carbamoyl-phosphate synthase small chain, CPSase domain

6

131

0.99

PF00117

GATase

Glutamine amidotransferase class-I

171

355

0.96

PF07722

Peptidase_C26

Peptidase C26

217

337

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
1c30-assembly1.cif.gz_B crystal structure of carbamoyl phosphate synthetase: small subunit mutation c269s 0.8927 3 371
1jdb-assembly1.cif.gz_F carbamoyl phosphate synthetase from escherichia coli 0.8897 3 372
1a9x-assembly1.cif.gz_B carbamoyl phosphate synthetase: caught in the act of glutamine hydrolysis 0.8897 3 371
1cs0-assembly4.cif.gz_B crystal structure of carbamoyl phosphate synthetase complexed at cys269 in the small subunit with the tetrahedral mimic l-glutamate gamma-semialdehyde 0.8896 3 371
1t36-assembly1.cif.gz_B crystal structure of e. coli carbamoyl phosphate synthetase small subunit mutant c248d complexed with uridine 5'-monophosphate 0.8895 3 371
ID Description Score Start End Superfamily
af_P9WPK5_156_373_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9323 153 366 3.40.50.880
af_P9WPK5_1_155_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.9134 3 151 3.50.30.20
af_P9WPK5_156_373_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9118 153 366 3.40.50.880
af_Q58425_140_353_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9073 149 367 3.40.50.880
af_C6TIQ8_51_199_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.8984 5 150 3.50.30.20
ID Description Score Start End GO Terms
AF-A0A3D8NBP3-F1-model_v4 deleted 0.9927 161 246
AF-A0A3D8NBP3-F1-model_v4 deleted 0.9703 161 246
AF-A0A349AW15-F1-model_v4 Carbamoyl phosphate synthase small subunit 0.9547 1 246 GO:0005524
GO:0006221
GO:0016874
AF-A0A6B3G1R9-F1-model_v4 Carbamoyl phosphate synthase small subunit 0.9519 118 227
AF-A0A7W0KJ74-F1-model_v4 Carbamoyl phosphate synthase small subunit 0.9511 1 230 GO:0005524
GO:0006221
GO:0016874

Map