F284425

General Info

Members Datasets Scaffolds Average Seq Length
185 134 153 560

Family's Representative Sequence

Representative Sequence 3300025913|Ga0207695_10005785|Ga0207695_100057857
Length 608
Sequence LHCNNKIFQRVSYLAGLFFGVFPNSIQAPAAHAAGLHDALRAQDDEVHIQTHWIVKSLTALMFLASAGYVPPASGQTDVAAQEFQRQQLPEAQPASGAAGKIPTGESPCFQVTRITLTGESAQRFQFALAGLNASDDPPMGRCLGVQGINIVMARIQNEIVTRGYITTRVLAEPQDIASGELRLTVVPGRIRAIRFAADADPRASQWNAVPASPGDLLNLRDIEQGLENFKRVPTAEADIKVAPSEGQGAQAGDSDLVISYRQAIPLRLTASVDDSGTKSTGKYQGSATVSLDNWLTLSDLFYISYNHDLGGGDAGIRGSQSHVVHYSLPFGYWALAFTNSASSYHQAVAGINQTYMYSGESENNELKLSRLVYRDAVRKTTLSFKGFLKASSNYVDDTEVEVQRRRTAGWELGVAHREFMGDATLDLSLAHKRGTGAFDSLPAPEEAFGEGTSRFQITTADLSLNLPFSWQAPWGKQALRYTFAARAQWNGTPLTPQDRFSIGGRYTVRGFDGEVTLLAENGWFVRNELSAALGQSGQEVYVGADYGQVGGPSAALLTGRRLAGAVTGLRGALGRVSYEVFAGTPISKPDRFQTARVTAGFNLMWSY

Samples

Sample ID Description Type Environment
1 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
2 2521172590 Herbaspirillum sp. GW103 Isolate Rhizosphere
3 2548876994 Herbaspirillum lusitanum P6-12 Isolate Nodule
4 2643221554 Duganella sp. Root1480D1 Isolate Unclassified
5 2643221638 Duganella sp. Root336D2 Isolate Unclassified
6 2643221644 Rhizobacter sp. Root1221 Isolate Unclassified
7 2648501693 Pantoea ananatis B1-9 Isolate Rhizosphere
8 2772190666 Serratia surfactantfaciens YD25 Isolate Unclassified
9 2818991445 Herbaspirillum hiltneri 3195 Isolate Unclassified
10 2847085930 Erwinia persicina B64 Isolate Bulb
11 2847797336 Pantoea ananatis NN08200 Isolate Unclassified
12 2865014394 Pantoea sp. R-71966 Isolate Unclassified
13 2869551831 Serratia inhibens PRI-2C Isolate Rhizosphere
14 2881609920 Pantoea sp. ARC607 Isolate Rhizosphere
15 2888373701 Serratia rhizosphaerae KUDC3025 Isolate Rhizosphere
16 2904439833 Herbaspirillum sp. 1589 Isolate Rhizosphere
17 2904530477 Herbaspirillum huttiense 611 Isolate Unclassified
18 2904584206 Herbaspirillum sp. 1050 Isolate Unclassified
19 2904589729 Herbaspirillum sp. 1130 Isolate Unclassified
20 2904601388 Herbaspirillum sp. 1273 Isolate Rhizosphere
21 2908669403 Pantoea coffeiphila 1480 Isolate Rhizosphere
22 2919079590 Herbaspirillum sp. 1173 Isolate Unclassified
23 2928130867 Herbaspirillum seropedicae 1977 Isolate Unclassified
24 2937967321 Serratia sp. YC16 Isolate Unclassified
25 2939577877 Serratia sp. 509 Isolate Rhizosphere
26 2945951305 Pantoea agglomerans W2I1 Isolate Rhizosphere
27 2978975091 Pantoea anthophila SORGH_AS 797 Isolate Unclassified
28 2984494565 Pantoea ananatis SORGH_AS197 Isolate Aerial Root
29 2990261002 Pantoea ananatis SORGH_AS213 Isolate Aerial Root
30 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
31 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
32 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
33 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
34 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
35 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
36 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
37 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
38 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
39 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
40 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
41 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
42 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
43 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
44 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
45 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
46 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
47 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
48 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
54 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
55 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
56 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
57 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
58 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
59 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
60 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
61 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
62 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
67 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
68 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
69 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
71 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
73 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
83 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
84 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
85 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
86 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
87 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
88 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
89 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
90 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
91 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
92 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
93 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
94 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
95 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
96 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
97 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
98 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
99 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
100 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
101 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
102 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
103 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
104 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
105 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
106 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
107 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
108 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
109 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
110 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
111 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
112 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
113 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
114 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
115 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
116 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
117 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
118 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
119 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
120 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
121 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
122 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
123 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
124 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
125 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
126 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
127 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
128 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
129 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
130 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
131 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
132 640753048 Serratia proteamaculans 568 Isolate Endosphere
133 8004592986 Serratia sp. S119 Isolate Unclassified
134 8054849141 Dryocola clanedunensis H11S18 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.7
Metatranscriptomes 0
Isolates 17.3

Biome Distribution

Category Percentage (%)
Aerial Root 1.08
Bulb 0.54
Endosphere 11.89
Nodule 1.08
Rhizoplane 1.62
Rhizosphere 55.68
Stem 0
Stem Tuber 0
Unclassified 28.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10010635 3300001979 Bacteria 3534
2 JGI24739J22299_10000139 3300001989 Bacteria 23189
3 JGI25162J39368_1002709 3300002737 Bacteria 6411
4 rootH1_10079072 3300003323 Bacteria 7301
5 Ga0055538_1000019 3300003751 Bacteria 282365
6 Ga0055539_1000024 3300003752 Bacteria 282365
7 Ga0055533_1000032 3300003756 Bacteria 282365
8 Ga0055525_1000041 3300003759 Bacteria 282365
9 Ga0055526_1005454 3300003771 Bacteria 7309
10 Ga0055534_1001734 3300003784 Bacteria 8237
11 Ga0055541_1000018 3300003841 Bacteria 282365
12 Ga0058692_1000781 3300003856 Bacteria 12791
13 Ga0065165_1001169 3300005262 Bacteria 30497
14 Ga0065704_10000304 3300005289 Bacteria 44405
15 Ga0070665_100030916 3300005548 Bacteria 5389
16 Ga0068855_100000137 3300005563 Bacteria 93126
17 Ga0068855_100000711 3300005563 Bacteria 40763
18 Ga0068855_100042740 3300005563 Bacteria 5370
19 Ga0068855_100121335 3300005563 Bacteria 2991
20 Ga0068856_100034797 3300005614 Bacteria 4935
21 Ga0099823_1027235 3300006944 Bacteria 4992
22 Ga0105244_10020633 3300009036 Bacteria 3656
23 Ga0105244_10033329 3300009036 Bacteria 2716
24 Ga0105240_10161178 3300009093 Bacteria 2664
25 Ga0105237_10003667 3300009545 Bacteria 18093
26 Ga0105238_10001872 3300009551 Bacteria 21098
27 Ga0105239_10118780 3300010375 Bacteria 2934
28 Ga0105246_10008530 3300011119 Bacteria 6302
29 Ga0157373_10043176 3300013100 Bacteria 3221
30 Ga0157371_10000400 3300013102 Bacteria 54327
31 Ga0157371_10000936 3300013102 Bacteria 32648
32 Ga0157371_10018472 3300013102 Bacteria 5154
33 Ga0157370_10011452 3300013104 Bacteria 9271
34 Ga0182008_10052653 3300014497 Bacteria 2017
35 Ga0182006_1000516 3300015261 Bacteria 29429
36 Ga0163161_10027404 3300017792 Bacteria 4041
37 Ga0213872_10000495 3300021361 Bacteria 31494
38 Ga0213872_10008532 3300021361 Bacteria 4955
39 Ga0209435_100183 3300025206 Bacteria 18784
40 Ga0209784_100009 3300025224 Bacteria 688031
41 Ga0209566_100007 3300025225 Bacteria 688031
42 Ga0209674_100018 3300025226 Bacteria 688031
43 Ga0209563_100020 3300025230 Bacteria 688031
44 Ga0209437_100404 3300025233 Bacteria 39946
45 Ga0209646_1000317 3300025246 Bacteria 37175
46 Ga0209026_1003400 3300025250 Bacteria 5247
47 Ga0209677_100010 3300025253 Bacteria 688031
48 Ga0209759_1000545 3300025256 Bacteria 39039
49 Ga0209675_1000100 3300025291 Bacteria 128565
50 Ga0209025_1001653 3300025294 Bacteria 27473
51 Ga0209564_1000731 3300025295 Bacteria 46895
52 Ga0209256_1000871 3300025299 Bacteria 37393
53 Ga0209051_1006420 3300025303 Bacteria 6627
54 Ga0207655_1018699 3300025728 Bacteria 3660
55 Ga0207695_10000429 3300025913 Bacteria 92640
56 Ga0207695_10005785 3300025913 Bacteria 16278
57 Ga0207671_10001091 3300025914 Bacteria 32819
58 Ga0207694_10001354 3300025924 Bacteria 21112
59 Ga0207667_10000112 3300025949 Bacteria 131462
60 Ga0207667_10000729 3300025949 Bacteria 42717
61 Ga0207667_10001141 3300025949 Bacteria 33402
62 Ga0207667_10035196 3300025949 Bacteria 5373
63 Ga0207702_10005953 3300026078 Bacteria 10591
64 Ga0209371_1000063 3300027312 Bacteria 218863
65 Ga0209371_1000869 3300027312 Bacteria 24351
66 Ga0209371_1002300 3300027312 Bacteria 10904
67 Ga0268256_1000060 3300030500 Bacteria 218807
68 Ga0268256_1000722 3300030500 Bacteria 24351
69 Ga0436361_0154492 3300039447 Bacteria 3360
70 Ga0439447_014843 3300041407 Bacteria 2173
71 Ga0439466_0012511 3300041411 Bacteria 3123
72 Ga0439432_009045 3300042006 Bacteria 3481
73 Ga0439432_017788 3300042006 Bacteria 2382
74 Ga0450923_000553 3300042125 Bacteria 4210
75 Ga0450907_000004 3300042146 Bacteria 128000
76 Ga0439464_0004841 3300042439 Bacteria 3451
77 Ga0450918_000109 3300042531 Bacteria 17693
78 Ga0450918_000781 3300042531 Bacteria 6732
79 Ga0466966_0025579 3300044684 Bacteria 3855
80 Ga0466957_0026808 3300044842 Bacteria 3420
81 Ga0451576_0003050 3300045051 Bacteria 23589
82 Ga0451576_0139822 3300045051 Bacteria 2525
83 Ga0495591_024511 3300046458 Bacteria 1911
84 Ga0495653_0001550 3300046463 Bacteria 17954
85 Ga0495585_0000668 3300046492 Bacteria 31510
86 Ga0495585_0001505 3300046492 Bacteria 18153
87 Ga0495585_0032335 3300046492 Bacteria 2964
88 Ga0495607_0000116 3300046501 Bacteria 84168
89 Ga0495607_0020869 3300046501 Bacteria 4130
90 Ga0495583_0000357 3300046506 Bacteria 71798
91 Ga0495583_0001629 3300046506 Bacteria 21908
92 Ga0495616_0000012 3300046513 Bacteria 211342
93 Ga0495616_0000944 3300046513 Bacteria 20900
94 Ga0495632_0000230 3300046519 Bacteria 56417
95 Ga0495643_0000489 3300046522 Bacteria 50165
96 Ga0495643_0040109 3300046522 Bacteria 2558
97 Ga0495642_0002254 3300046528 Bacteria 7897
98 Ga0495597_0000921 3300046542 Bacteria 22807
99 Ga0495633_0002361 3300046558 Bacteria 13379
100 Ga0495633_0014448 3300046558 Bacteria 4129
101 Ga0495668_0001275 3300046616 Bacteria 25008
102 Ga0495611_0000856 3300046648 Bacteria 16694
103 Ga0495661_0000321 3300046665 Bacteria 53040
104 Ga0495661_0008784 3300046665 Bacteria 6971
105 Ga0495661_0024769 3300046665 Bacteria 3884
106 Ga0495670_0003186 3300046691 Bacteria 8079
107 Ga0495660_0033422 3300046810 Bacteria 2884
108 Ga0495672_0000083 3300047320 Bacteria 158118
109 Ga0495687_001068 3300047443 Bacteria 27062
110 Ga0495679_001665 3300047446 Bacteria 12371
111 Ga0495681_0000076 3300047470 Bacteria 89319
112 Ga0495681_0000998 3300047470 Bacteria 21657
113 Ga0495681_0038869 3300047470 Bacteria 2328
114 Ga0495602_0007527 3300048088 Bacteria 11390
115 Ga0495626_0000965 3300048091 Bacteria 24919
116 Ga0495626_0003363 3300048091 Bacteria 10305
117 Ga0496104_0098681 3300048907 Bacteria 2796
118 Ga0496105_0000586 3300048908 Bacteria 24226
119 Ga0496105_0002406 3300048908 Bacteria 13549
120 Ga0496116_0006820 3300048919 Bacteria 10266
121 Ga0496116_0006903 3300048919 Bacteria 10188
122 Ga0496117_0000212 3300048920 Bacteria 112241
123 Ga0496117_0043043 3300048920 Bacteria 3288
124 Ga0496118_0000630 3300048921 Bacteria 58000
125 Ga0496118_0043044 3300048921 Bacteria 3554
126 Ga0496118_0093674 3300048921 Bacteria 2057
127 Ga0496119_0000087 3300048922 Bacteria 135623
128 Ga0496119_0000312 3300048922 Bacteria 68025
129 Ga0496119_0001795 3300048922 Bacteria 24973
130 Ga0496119_0003819 3300048922 Bacteria 15391
131 Ga0496120_0000263 3300048923 Bacteria 87504
132 Ga0496120_0000373 3300048923 Bacteria 72921
133 Ga0496120_0002058 3300048923 Bacteria 21712
134 Ga0496120_0004335 3300048923 Bacteria 11991
135 Ga0496121_0015899 3300048924 Bacteria 7818
136 Ga0496121_0018352 3300048924 Bacteria 7058
137 Ga0496122_0002792 3300048925 Bacteria 24001
138 Ga0496123_0040655 3300048926 Bacteria 3234
139 Ga0496123_0042461 3300048926 Bacteria 3137
140 Ga0496124_0000712 3300048927 Bacteria 54435
141 Ga0496124_0003954 3300048927 Bacteria 17695
142 Ga0496124_0007384 3300048927 Bacteria 11691
143 Ga0496124_0012815 3300048927 Bacteria 8236
144 Ga0496124_0021220 3300048927 Bacteria 5988
145 Ga0496125_0000773 3300048928 Bacteria 52257
146 Ga0496125_0001835 3300048928 Bacteria 29344
147 Ga0496125_0001870 3300048928 Bacteria 28922
148 Ga0496125_0003649 3300048928 Bacteria 18418
149 Ga0496125_0004846 3300048928 Bacteria 15281
150 Ga0496126_0002251 3300048929 Bacteria 26628
151 Ga0496126_0063013 3300048929 Bacteria 3324
152 Ga0495682_0001220 3300049460 Bacteria 14580
153 Ga0500651_0006449 3300053093 Bacteria 6769

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046492 Ga0495585_0000668 Ga0495585_0000668_6574_8010 468
2 3300046542 Ga0495597_0000921 Ga0495597_0000921_3256_4692 468
3 3300025303 Ga0209051_1006420 Ga0209051_10064202 476
4 3300048921 Ga0496118_0093674 Ga0496118_0093674_47_1528 480
5 3300005563 Ga0068855_100000711 Ga0068855_10000071127 490
6 3300025949 Ga0207667_10000729 Ga0207667_1000072927 490
7 3300044842 Ga0466957_0026808 Ga0466957_0026808_1899_3404 491
8 3300042125 Ga0450923_000553 Ga0450923_000553_492_2039 502
9 3300042531 Ga0450918_000109 Ga0450918_000109_11125_12672 502
10 3300005614 Ga0068856_100034797 Ga0068856_1000347972 510
11 3300026078 Ga0207702_10005953 Ga0207702_100059532 510
12 3300048928 Ga0496125_0000773 Ga0496125_0000773_2394_4208 510
13 3300046492 Ga0495585_0001505 Ga0495585_0001505_13231_14850 513
14 3300046501 Ga0495607_0020869 Ga0495607_0020869_603_2222 513
15 3300046665 Ga0495661_0024769 Ga0495661_0024769_720_2339 513
16 3300005563 Ga0068855_100121335 Ga0068855_1001213353 515
17 3300025949 Ga0207667_10001141 Ga0207667_1000114110 515
18 3300021361 Ga0213872_10000495 Ga0213872_1000049519 516
19 3300046506 Ga0495583_0001629 Ga0495583_0001629_16747_18438 517
20 3300047470 Ga0495681_0000076 Ga0495681_0000076_16319_18010 517
21 3300047470 Ga0495681_0000998 Ga0495681_0000998_19538_21229 517
22 3300048927 Ga0496124_0012815 Ga0496124_0012815_5071_6762 517
23 3300049460 Ga0495682_0001220 Ga0495682_0001220_416_2083 517
24 3300046506 Ga0495583_0000357 Ga0495583_0000357_34347_36038 519
25 3300046528 Ga0495642_0002254 Ga0495642_0002254_5796_7475 519
26 3300046558 Ga0495633_0002361 Ga0495633_0002361_11419_13098 519
27 3300046616 Ga0495668_0001275 Ga0495668_0001275_17184_18863 519
28 3300046648 Ga0495611_0000856 Ga0495611_0000856_12202_13881 519
29 3300046665 Ga0495661_0008784 Ga0495661_0008784_139_1818 519
30 3300046691 Ga0495670_0003186 Ga0495670_0003186_2924_4603 519
31 3300046810 Ga0495660_0033422 Ga0495660_0033422_231_1922 519
32 3300047443 Ga0495687_001068 Ga0495687_001068_1593_3284 519
33 3300047470 Ga0495681_0038869 Ga0495681_0038869_480_2159 519
34 3300003751 Ga0055538_1000019 Ga0055538_1000019269 520
35 3300003752 Ga0055539_1000024 Ga0055539_100002421 520
36 3300003756 Ga0055533_1000032 Ga0055533_1000032269 520
37 3300003759 Ga0055525_1000041 Ga0055525_1000041269 520
38 3300003841 Ga0055541_1000018 Ga0055541_100001821 520
39 3300005262 Ga0065165_1001169 Ga0065165_10011696 520
40 3300021361 Ga0213872_10008532 Ga0213872_100085324 520
41 3300025224 Ga0209784_100009 Ga0209784_10000995 520
42 3300025225 Ga0209566_100007 Ga0209566_10000795 520
43 3300025226 Ga0209674_100018 Ga0209674_10001895 520
44 3300025230 Ga0209563_100020 Ga0209563_10002095 520
45 3300025253 Ga0209677_100010 Ga0209677_10001095 520
46 3300039447 Ga0436361_0154492 Ga0436361_0154492_865_2520 520
47 3300003323 rootH1_10079072 rootH1_100790727 521
48 3300048928 Ga0496125_0001870 Ga0496125_0001870_24375_26108 521
49 3300025299 Ga0209256_1000871 Ga0209256_100087111 523
50 3300002737 JGI25162J39368_1002709 JGI25162J39368_10027092 524
51 3300025233 Ga0209437_100404 Ga0209437_10040415 524
52 3300046513 Ga0495616_0000012 Ga0495616_0000012_206260_207951 524
53 3300025206 Ga0209435_100183 Ga0209435_1001836 526
54 3300025246 Ga0209646_1000317 Ga0209646_100031734 526
55 3300025250 Ga0209026_1003400 Ga0209026_10034003 526
56 3300025256 Ga0209759_1000545 Ga0209759_100054531 526
57 3300006944 Ga0099823_1027235 Ga0099823_10272352 527
58 3300025294 Ga0209025_1001653 Ga0209025_10016533 529
59 3300048927 Ga0496124_0021220 Ga0496124_0021220_173_1921 529
60 3300025913 Ga0207695_10005785 Ga0207695_100057857 530
61 3300009545 Ga0105237_10003667 Ga0105237_1000366711 531
62 3300009551 Ga0105238_10001872 Ga0105238_100018727 531
63 3300010375 Ga0105239_10118780 Ga0105239_101187802 531
64 3300025913 Ga0207695_10000429 Ga0207695_1000042948 531
65 3300025914 Ga0207671_10001091 Ga0207671_1000109114 531
66 3300025924 Ga0207694_10001354 Ga0207694_100013546 531
67 3300009093 Ga0105240_10161178 Ga0105240_101611782 532
68 3300015261 Ga0182006_1000516 Ga0182006_100051617 532
69 iso_pu_bacteria 2881609920 2881614013 532
70 3300044684 Ga0466966_0025579 Ga0466966_0025579_869_2548 533
71 3300046463 Ga0495653_0001550 Ga0495653_0001550_16098_17789 533
72 3300046501 Ga0495607_0000116 Ga0495607_0000116_34322_35965 533
73 3300046513 Ga0495616_0000944 Ga0495616_0000944_14243_15886 533
74 3300046519 Ga0495632_0000230 Ga0495632_0000230_34350_35993 533
75 3300046522 Ga0495643_0000489 Ga0495643_0000489_16287_17978 533
76 3300046665 Ga0495661_0000321 Ga0495661_0000321_33658_35349 533
77 3300048088 Ga0495602_0007527 Ga0495602_0007527_9173_10864 533
78 3300048091 Ga0495626_0000965 Ga0495626_0000965_21433_23124 533
79 3300048091 Ga0495626_0003363 Ga0495626_0003363_1175_2866 533
80 iso_pu_bacteria 2847797336 2847800831 533
81 3300009036 Ga0105244_10033329 Ga0105244_100333292 534
82 iso_pu_bacteria 2521172590 2521559496 534
83 3300005563 Ga0068855_100000137 Ga0068855_10000013710 535
84 3300025949 Ga0207667_10000112 Ga0207667_1000011241 535
85 3300048919 Ga0496116_0006903 Ga0496116_0006903_284_2029 536
86 3300048922 Ga0496119_0003819 Ga0496119_0003819_4543_6288 536
87 3300048923 Ga0496120_0000263 Ga0496120_0000263_9105_10850 536
88 iso_pu_bacteria 2643221554 2643792399 536
89 iso_pu_bacteria 2643221638 2644213136 536
90 3300027312 Ga0209371_1002300 Ga0209371_10023005 537
91 iso_pu_bacteria 8054849141 8054850737 539
92 3300001989 JGI24739J22299_10000139 JGI24739J22299_100001392 541
93 3300009036 Ga0105244_10020633 Ga0105244_100206333 541
94 3300013102 Ga0157371_10000936 Ga0157371_1000093636 541
95 3300013104 Ga0157370_10011452 Ga0157370_100114524 541
96 3300025728 Ga0207655_1018699 Ga0207655_10186992 541
97 3300042006 Ga0439432_009045 Ga0439432_009045_1594_3330 541
98 3300048920 Ga0496117_0000212 Ga0496117_0000212_12337_14100 541
99 3300048921 Ga0496118_0000630 Ga0496118_0000630_20297_22060 541
100 3300048927 Ga0496124_0003954 Ga0496124_0003954_3577_5313 541
101 iso_pu_bacteria 2648501693 2650895504 541
102 iso_pu_bacteria 2904439833 2904440441 541
103 iso_pu_bacteria 2904530477 2904530659 541
104 iso_pu_bacteria 2904584206 2904585932 541
105 iso_pu_bacteria 2904589729 2904592255 541
106 iso_pu_bacteria 2904601388 2904601605 541
107 iso_pu_bacteria 2908669403 2908673025 541
108 iso_pu_bacteria 2919079590 2919082738 541
109 iso_pu_bacteria 2984494565 2984495704 541
110 iso_pu_bacteria 2990261002 2990265600 541
111 iso_pu_bacteria 8004592986 8004597138 541
112 3300045051 Ga0451576_0003050 Ga0451576_0003050_17320_19107 542
113 3300053093 Ga0500651_0006449 Ga0500651_0006449_394_2070 542
114 3300013100 Ga0157373_10043176 Ga0157373_100431762 543
115 3300013102 Ga0157371_10018472 Ga0157371_100184722 543
116 3300042439 Ga0439464_0004841 Ga0439464_0004841_1574_3244 543
117 3300048922 Ga0496119_0000312 Ga0496119_0000312_58365_60035 543
118 3300048923 Ga0496120_0000373 Ga0496120_0000373_58365_60035 543
119 3300048926 Ga0496123_0040655 Ga0496123_0040655_105_1775 543
120 iso_pu_bacteria 2772190666 2772439223 543
121 iso_pu_bacteria 2818991445 2819591460 543
122 iso_pu_bacteria 2869551831 2869555668 543
123 iso_pu_bacteria 2937967321 2937967852 543
124 3300003856 Ga0058692_1000781 Ga0058692_10007813 544
125 3300005548 Ga0070665_100030916 Ga0070665_1000309162 544
126 3300011119 Ga0105246_10008530 Ga0105246_100085302 544
127 3300014497 Ga0182008_10052653 Ga0182008_100526531 544
128 3300017792 Ga0163161_10027404 Ga0163161_100274041 544
129 3300027312 Ga0209371_1000063 Ga0209371_1000063124 544
130 3300027312 Ga0209371_1000869 Ga0209371_10008693 544
131 3300030500 Ga0268256_1000060 Ga0268256_100006059 544
132 3300030500 Ga0268256_1000722 Ga0268256_10007223 544
133 3300041407 Ga0439447_014843 Ga0439447_014843_261_1991 544
134 3300041411 Ga0439466_0012511 Ga0439466_0012511_46_1776 544
135 3300042006 Ga0439432_017788 Ga0439432_017788_133_1863 544
136 3300042146 Ga0450907_000004 Ga0450907_000004_40559_42289 544
137 3300046458 Ga0495591_024511 Ga0495591_024511_85_1815 544
138 3300046492 Ga0495585_0032335 Ga0495585_0032335_511_2241 544
139 3300046522 Ga0495643_0040109 Ga0495643_0040109_676_2406 544
140 3300047320 Ga0495672_0000083 Ga0495672_0000083_452_2182 544
141 3300047446 Ga0495679_001665 Ga0495679_001665_24_1754 544
142 3300048908 Ga0496105_0000586 Ga0496105_0000586_12052_13782 544
143 3300048919 Ga0496116_0006820 Ga0496116_0006820_6428_8146 544
144 3300048920 Ga0496117_0043043 Ga0496117_0043043_1068_2798 544
145 3300048921 Ga0496118_0043044 Ga0496118_0043044_520_2250 544
146 3300048922 Ga0496119_0000087 Ga0496119_0000087_93185_94915 544
147 3300048923 Ga0496120_0004335 Ga0496120_0004335_7699_9429 544
148 3300048926 Ga0496123_0042461 Ga0496123_0042461_156_1886 544
149 3300048927 Ga0496124_0000712 Ga0496124_0000712_5906_7636 544
150 3300048927 Ga0496124_0007384 Ga0496124_0007384_8841_10559 544
151 3300048928 Ga0496125_0004846 Ga0496125_0004846_10700_12430 544
152 3300048929 Ga0496126_0063013 Ga0496126_0063013_1075_2805 544
153 iso_pu_bacteria 2548876994 2550696277 544
154 iso_pu_bacteria 2847085930 2847089478 544
155 iso_pu_bacteria 2865014394 2865016975 544
156 iso_pu_bacteria 2888373701 2888375653 544
157 iso_pu_bacteria 2939577877 2939578359 544
158 iso_pu_bacteria 2945951305 2945954885 544
159 iso_pu_bacteria 2978975091 2978977374 544
160 iso_pu_bacteria 640753048 640939639 544
161 3300013102 Ga0157371_10000400 Ga0157371_1000040015 545
162 3300046558 Ga0495633_0014448 Ga0495633_0014448_423_2171 545
163 3300048907 Ga0496104_0098681 Ga0496104_0098681_711_2459 545
164 3300048908 Ga0496105_0002406 Ga0496105_0002406_5327_7075 545
165 3300048922 Ga0496119_0001795 Ga0496119_0001795_6948_8696 545
166 3300048923 Ga0496120_0002058 Ga0496120_0002058_16294_18042 545
167 3300048924 Ga0496121_0015899 Ga0496121_0015899_18_1766 545
168 3300048924 Ga0496121_0018352 Ga0496121_0018352_4435_6144 545
169 3300048925 Ga0496122_0002792 Ga0496122_0002792_11134_12843 545
170 3300048928 Ga0496125_0001835 Ga0496125_0001835_16290_17999 545
171 3300048928 Ga0496125_0003649 Ga0496125_0003649_5673_7421 545
172 3300048929 Ga0496126_0002251 Ga0496126_0002251_16270_18018 545
173 iso_pu_bacteria 2511231026 2511386392 545
174 3300025291 Ga0209675_1000100 Ga0209675_100010029 546
175 3300025295 Ga0209564_1000731 Ga0209564_100073113 546
176 3300042531 Ga0450918_000781 Ga0450918_000781_2378_4102 546
177 3300005289 Ga0065704_10000304 Ga0065704_1000030428 547
178 iso_pu_bacteria 2928130867 2928133123 547
179 3300045051 Ga0451576_0139822 Ga0451576_0139822_168_1955 551
180 3300003771 Ga0055526_1005454 Ga0055526_10054542 552
181 3300003784 Ga0055534_1001734 Ga0055534_10017342 552
182 iso_pu_bacteria 2643221644 2644243926 554
183 3300001979 JGI24740J21852_10010635 JGI24740J21852_100106352 562
184 3300005563 Ga0068855_100042740 Ga0068855_1000427402 562
185 3300025949 Ga0207667_10035196 Ga0207667_100351962 562

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03865

ShlB

Haemolysin secretion/activation protein ShlB/FhaC/HecB

253

572

0.96

PF17287

POTRA_3

POTRA domain

190

244

0.95

PF08479

POTRA_2

POTRA domain, ShlB-type

110

189

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
6wil-assembly1.cif.gz_A cdib from acinetobacter baumannii 0.8196 26 562
6wil-assembly1.cif.gz_A cdib from acinetobacter baumannii 0.8038 26 562
6wim-assembly1.cif.gz_A cdib from escherichia coli 0.7957 15 562
6wim-assembly1.cif.gz_A cdib from escherichia coli 0.7933 15 562
3njt-assembly1.cif.gz_A crystal structure of the r450a mutant of the membrane protein fhac 0.7501 78 562
ID Description Score Start End Superfamily
2qdzA01 Mainly Beta;Beta Barrel;Porin;membrane protein fhac: a member of the omp85/tpsb transporter family 0.7801 229 562 2.40.160.50
3njtA01 Mainly Beta;Beta Barrel;Porin;membrane protein fhac: a member of the omp85/tpsb transporter family 0.7733 229 562 2.40.160.50
5aywA05 Alpha Beta;Roll;Ubiquitin-like (UB roll);membrane protein fhac 0.7661 158 232 3.10.20.310
5aywA05 Alpha Beta;Roll;Ubiquitin-like (UB roll);membrane protein fhac 0.7319 158 232 3.10.20.310
2qdzA01 Mainly Beta;Beta Barrel;Porin;membrane protein fhac: a member of the omp85/tpsb transporter family 0.7229 229 562 2.40.160.50
ID Description Score Start End GO Terms
AF-A0A1Q3N5R3-F1-model_v4 ShlB/FhaC/HecB family hemolysin secretion/activation protein 0.9081 74 562 GO:0008320
GO:0009279
GO:0046819
GO:0098046
AF-A0A1Q3N5R3-F1-model_v4 ShlB/FhaC/HecB family hemolysin secretion/activation protein 0.8888 74 562 GO:0008320
GO:0009279
GO:0046819
GO:0098046
AF-A0A5E5B7F8-F1-model_v4 HlyB-like activation/secretion signal peptide protein 0.85 47 562 GO:0008320
GO:0009279
GO:0046819
GO:0098046
AF-E5ARP0-F1-model_v4 Hemolysin activator protein 0.8429 6 562 GO:0008320
GO:0009279
GO:0046819
GO:0098046
AF-A0A4V2EUW3-F1-model_v4 deleted 0.8382 379 562

Feature Viewer

pLDDT pTM Quality
76.99 0.75 High
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Predicted Structure (AlphaFold2)

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