F283279

General Info

Members Datasets Scaffolds Average Seq Length
184 118 171 412

Family's Representative Sequence

Representative Sequence 3300049571|Ga0501034_0056606|Ga0501034_0056606_24_1367
Length 447
Sequence MTTITSVTVTDIRFPTSLSMDGSDAMNKDGDYSAAYVHIATDDPGLSGYGFTFTIGRGNDLCVEAARQRGLPLIGRDVAQVVGDLGGIYRELQSDSQLRWLGPEKGVIHLALAAVMNAVWDLAARVAGVPLWRLLADMTPEQLVDAADLRYLSDALTREEAIALLAELAPSREQRIAELEQTGYPCYTTSAGWLGYSDDKLRRLCQEAVDAGYRHVKLKVGADLEEDIRRLRIAREVIGPDANLMIDANQVWDVPQAIEWVNALAEFRPLWIEEPTSPDDVLGHAAIRRAVHPIGVASGEHGMNRVLFKQMFQAEALDYCQLDSARLGSVNEILAVYLLARKFGVPVCPHAGGVGLCELVQHLSVFDYVAVSGDLEGRVTEYVDHLHEHFADPCIVEDGAYRLPTAPGYSAEILPASIEEFRFPDGSYWAGAVTASSSSTKTSMASR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
3 2738541283 Pedobacter sp. OK701 Isolate Unclassified
4 2738541284 Pedobacter sp. YR016 Isolate Unclassified
5 2738541302 Pedobacter sp. CF074 Isolate Unclassified
6 2739367656 Pedobacter sp. CF523 Isolate Unclassified
7 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
8 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
9 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
10 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
11 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
12 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
13 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
14 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
15 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
16 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
17 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
18 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
19 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
20 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
21 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
22 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
23 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
24 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
25 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
26 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
27 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
28 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
50 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
51 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
52 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
54 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
55 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
57 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
58 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
75 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
76 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
77 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
78 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
79 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
80 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
81 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
82 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
83 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
84 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
85 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
86 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
87 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
88 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
89 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
90 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
91 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
92 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
93 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
94 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
95 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
96 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
97 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
98 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
99 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
100 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
107 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
108 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
109 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
110 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
111 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
112 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
113 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
114 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
115 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
116 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
117 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified
118 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.93
Metatranscriptomes 0
Isolates 7.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.87
Nodule 0
Rhizoplane 0
Rhizosphere 73.91
Stem 0
Stem Tuber 0
Unclassified 15.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2775884 2162886007 Bacteria 1833
2 SwRhRL2b_contig_320635 2162886007 Bacteria 15481
3 JGI24740J21852_10002244 3300001979 Bacteria 8819
4 JGI25154J39366_1000012 3300002738 Bacteria 287601
5 JGI25157J39369_1006194 3300002741 Bacteria 1852
6 rootH2_10008804 3300003320 Bacteria 29472
7 rootH1_10341278 3300003323 Bacteria 3254
8 Ga0055535_1003470 3300003761 Bacteria 4449
9 Ga0065165_1014364 3300005262 Bacteria 3080
10 Ga0065714_10003685 3300005288 Bacteria 6384
11 Ga0065714_10076824 3300005288 Bacteria 2750
12 Ga0065714_10087922 3300005288 Bacteria 2039
13 Ga0065704_10000252 3300005289 Bacteria 51507
14 Ga0065704_10075791 3300005289 Bacteria 5416
15 Ga0070658_10000034 3300005327 Bacteria 146880
16 Ga0070658_10004915 3300005327 Bacteria 10891
17 Ga0070682_100028989 3300005337 Bacteria 3332
18 Ga0068868_100060846 3300005338 Bacteria 2991
19 Ga0070660_100030255 3300005339 Bacteria 4062
20 Ga0070681_10116721 3300005458 Bacteria 2606
21 Ga0070679_100052977 3300005530 Bacteria 4039
22 Ga0070684_100053489 3300005535 Bacteria 3515
23 Ga0070665_100000041 3300005548 Bacteria 297849
24 Ga0068855_100296099 3300005563 Bacteria 1793
25 Ga0068857_100011602 3300005577 Bacteria 7666
26 Ga0068856_100016780 3300005614 Bacteria 7096
27 Ga0068856_100098519 3300005614 Bacteria 2913
28 Ga0068852_100001148 3300005616 Bacteria 17515
29 Ga0068852_100107833 3300005616 Bacteria 2527
30 Ga0068852_100151244 3300005616 Bacteria 2159
31 Ga0068851_10000027 3300005834 Bacteria 118586
32 Ga0068863_100002626 3300005841 Bacteria 17790
33 Ga0068863_100124457 3300005841 Bacteria 2460
34 Ga0068860_100000491 3300005843 Bacteria 48922
35 Ga0068860_100018459 3300005843 Bacteria 6784
36 Ga0105240_10000242 3300009093 Bacteria 108001
37 Ga0105240_10000339 3300009093 Bacteria 87543
38 Ga0105240_10001927 3300009093 Bacteria 34500
39 Ga0105240_10004968 3300009093 Bacteria 19989
40 Ga0105240_10015198 3300009093 Bacteria 10475
41 Ga0105240_10026326 3300009093 Bacteria 7631
42 Ga0105240_10175965 3300009093 Bacteria 2530
43 Ga0105245_10033496 3300009098 Bacteria 4555
44 Ga0105241_10002160 3300009174 Bacteria 14826
45 Ga0105241_10010284 3300009174 Bacteria 6872
46 Ga0105241_10265320 3300009174 Bacteria 1461
47 Ga0105237_10000442 3300009545 Bacteria 59060
48 Ga0105237_10007817 3300009545 Bacteria 11658
49 Ga0105237_10008573 3300009545 Bacteria 11058
50 Ga0105237_10018831 3300009545 Bacteria 7141
51 Ga0105237_10069044 3300009545 Bacteria 3529
52 Ga0105237_10121589 3300009545 Bacteria 2605
53 Ga0105238_10020993 3300009551 Bacteria 6653
54 Ga0105238_10042065 3300009551 Bacteria 4627
55 Ga0105238_10330408 3300009551 Bacteria 1511
56 Ga0105239_10002087 3300010375 Bacteria 25905
57 Ga0105239_10047327 3300010375 Bacteria 4714
58 Ga0105239_10185478 3300010375 Bacteria 2328
59 Ga0157373_10002368 3300013100 Bacteria 14315
60 Ga0157373_10013358 3300013100 Bacteria 6023
61 Ga0157373_10017992 3300013100 Bacteria 5147
62 Ga0157371_10000707 3300013102 Bacteria 39149
63 Ga0157371_10010532 3300013102 Bacteria 7191
64 Ga0157371_10212845 3300013102 Unclassified 1387
65 Ga0157370_10000896 3300013104 Bacteria 37760
66 Ga0157370_10006184 3300013104 Bacteria 13274
67 Ga0157370_10008159 3300013104 Bacteria 11323
68 Ga0157370_10016705 3300013104 Bacteria 7427
69 Ga0157370_10023399 3300013104 Bacteria 6133
70 Ga0157369_10021750 3300013105 Bacteria 7173
71 Ga0157369_10049553 3300013105 Bacteria 4553
72 Ga0163162_10001178 3300013306 Bacteria 24409
73 Ga0157372_10025395 3300013307 Bacteria 6441
74 Ga0157372_10067747 3300013307 Bacteria 4012
75 Ga0157372_10120206 3300013307 Bacteria 3016
76 Ga0182008_10000047 3300014497 Bacteria 108181
77 Ga0182008_10000462 3300014497 Bacteria 31030
78 Ga0182006_1000403 3300015261 Bacteria 35045
79 Ga0182006_1002070 3300015261 Bacteria 11228
80 Ga0163161_10000700 3300017792 Bacteria 26736
81 Ga0209258_100160 3300025242 Bacteria 154101
82 Ga0209646_1000009 3300025246 Bacteria 652154
83 Ga0209026_1000188 3300025250 Bacteria 90347
84 Ga0209148_1000153 3300025254 Bacteria 147028
85 Ga0209148_1001149 3300025254 Bacteria 15412
86 Ga0209758_1008296 3300025297 Bacteria 6785
87 Ga0207426_1000564 3300025302 Bacteria 50590
88 Ga0207656_10000001 3300025321 Bacteria 1323684
89 Ga0207647_10007141 3300025904 Bacteria 8100
90 Ga0207705_10000001 3300025909 Bacteria 2061880
91 Ga0207705_10015152 3300025909 Bacteria 5541
92 Ga0207654_10000001 3300025911 Bacteria 1816198
93 Ga0207695_10000066 3300025913 Bacteria 334103
94 Ga0207695_10000469 3300025913 Bacteria 87551
95 Ga0207695_10003298 3300025913 Bacteria 22912
96 Ga0207695_10009865 3300025913 Bacteria 11734
97 Ga0207695_10015559 3300025913 Bacteria 8949
98 Ga0207695_10066085 3300025913 Bacteria 3716
99 Ga0207695_10073791 3300025913 Bacteria 3475
100 Ga0207671_10000001 3300025914 Bacteria 1318881
101 Ga0207671_10002372 3300025914 Bacteria 20248
102 Ga0207671_10026237 3300025914 Bacteria 4368
103 Ga0207671_10114922 3300025914 Bacteria 2052
104 Ga0207657_10006561 3300025919 Bacteria 12048
105 Ga0207694_10000222 3300025924 Bacteria 55592
106 Ga0207694_10010227 3300025924 Bacteria 7074
107 Ga0207667_10001217 3300025949 Bacteria 32222
108 Ga0207667_10006165 3300025949 Bacteria 14561
109 Ga0207667_10261670 3300025949 Bacteria 1769
110 Ga0207677_10136567 3300026023 Bacteria 1871
111 Ga0207702_10075216 3300026078 Bacteria 2917
112 Ga0207641_10000391 3300026088 Bacteria 51728
113 Ga0207641_10025022 3300026088 Bacteria 4923
114 Ga0207674_10044840 3300026116 Bacteria 4554
115 Ga0207698_10001364 3300026142 Bacteria 14223
116 Ga0207698_10004729 3300026142 Bacteria 8328
117 Ga0268266_10000014 3300028379 Bacteria 644033
118 Ga0268264_10000674 3300028381 Bacteria 39908
119 Ga0268264_10013103 3300028381 Bacteria 6818
120 Ga0307517_10006315 3300028786 Bacteria 17589
121 Ga0307515_10000001 3300028794 Bacteria 4259510
122 Ga0307511_10000264 3300030521 Bacteria 54303
123 Ga0265327_10021587 3300031251 Bacteria 3880
124 Ga0307509_10122055 3300031507 Bacteria 2581
125 Ga0307514_10004426 3300031649 Bacteria 12928
126 Ga0307516_10000656 3300031730 Bacteria 46771
127 Ga0307412_10000001 3300031911 Bacteria 822691
128 Ga0307414_10005255 3300032004 Bacteria 7118
129 Ga0307414_10023581 3300032004 Bacteria 3906
130 Ga0307414_10081979 3300032004 Unclassified 2364
131 Ga0307414_10187645 3300032004 Bacteria 1670
132 Ga0307510_10000497 3300033180 Bacteria 38862
133 Ga0307510_10002234 3300033180 Bacteria 21891
134 Ga0373927_0028117 3300035695 Bacteria 3670
135 Ga0466965_0008619 3300044683 Bacteria 4718
136 Ga0453684_0752154 3300044712 Unclassified 1055
137 Ga0495651_0115814 3300046462 Bacteria 1976
138 Ga0495585_0052099 3300046492 Bacteria 2266
139 Ga0495606_0007647 3300046507 Bacteria 9591
140 Ga0495648_0015412 3300046524 Bacteria 5552
141 Ga0495668_0000950 3300046616 Bacteria 32188
142 Ga0495611_0000590 3300046648 Bacteria 20935
143 Ga0495625_0102198 3300046660 Bacteria 1968
144 Ga0495687_000144 3300047443 Bacteria 108217
145 Ga0495686_0000004 3300047472 Bacteria 869019
146 Ga0496116_0021149 3300048919 Bacteria 4914
147 Ga0496117_0003071 3300048920 Bacteria 19993
148 Ga0496122_0003701 3300048925 Bacteria 19795
149 Ga0496122_0005541 3300048925 Bacteria 14981
150 Ga0496125_0048641 3300048928 Bacteria 3534
151 Ga0501032_0073967 3300049569 Bacteria 2270
152 Ga0501033_0004539 3300049570 Bacteria 11113
153 Ga0501034_0056606 3300049571 Bacteria 3944
154 Ga0501034_0169146 3300049571 Bacteria 2153
155 Ga0501036_0065071 3300049572 Bacteria 3086
156 Ga0501043_0008756 3300049579 Bacteria 7967
157 Ga0501047_0079889 3300049581 Bacteria 3144
158 Ga0501072_0011359 3300049588 Bacteria 6806
159 Ga0500635_0015513 3300053080 Bacteria 2251
160 Ga0500644_0000295 3300053088 Bacteria 26799
161 Ga0500583_0011528 3300053092 Bacteria 3336
162 Ga0500651_0000373 3300053093 Bacteria 24533
163 Ga0500651_0004067 3300053093 Bacteria 8131
164 Ga0500652_013347 3300053131 Bacteria 2906
165 Ga0500559_0019837 3300053136 Bacteria 2841
166 Ga0500577_0007554 3300053142 Bacteria 3056
167 Ga0500616_0003177 3300053153 Bacteria 12792
168 Ga0500616_0008524 3300053153 Bacteria 6356
169 Ga0500620_000030 3300053155 Bacteria 28416
170 Ga0500620_014916 3300053155 Bacteria 2183
171 Ga0500633_0008459 3300053160 Bacteria 2655

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300005530 Ga0070679_100052977 Ga0070679_1000529773 330
2 3300044712 Ga0453684_0752154 Ga0453684_0752154_15_1034 339
3 3300046462 Ga0495651_0115814 Ga0495651_0115814_63_1184 373
4 3300009174 Ga0105241_10265320 Ga0105241_102653201 377
5 3300053080 Ga0500635_0015513 Ga0500635_0015513_353_1573 386
6 iso_pu_bacteria 2721755487 2722728382 402
7 iso_pu_bacteria 2738541283 2738754895 403
8 iso_pu_bacteria 2738541302 2738853116 403
9 iso_pu_bacteria 2739367656 2739617675 403
10 iso_pu_bacteria 2896109856 2896112230 403
11 iso_pu_bacteria 2738541284 2738761674 405
12 iso_pu_bacteria 2775506987 2776615677 405
13 iso_pu_bacteria 2929239360 2929242139 405
14 iso_pu_bacteria 2929921140 2929924257 405
15 iso_pu_bacteria 8003151029 8003156117 405
16 3300005548 Ga0070665_100000041 Ga0070665_100000041114 406
17 3300005843 Ga0068860_100000491 Ga0068860_10000049122 406
18 3300009093 Ga0105240_10001927 Ga0105240_1000192718 406
19 3300009545 Ga0105237_10069044 Ga0105237_100690443 406
20 3300009551 Ga0105238_10042065 Ga0105238_100420653 406
21 3300013100 Ga0157373_10002368 Ga0157373_100023685 406
22 3300013104 Ga0157370_10008159 Ga0157370_100081597 406
23 3300013306 Ga0163162_10001178 Ga0163162_1000117812 406
24 3300013307 Ga0157372_10120206 Ga0157372_101202062 406
25 3300025913 Ga0207695_10009865 Ga0207695_100098655 406
26 3300028379 Ga0268266_10000014 Ga0268266_1000001481 406
27 3300028381 Ga0268264_10000674 Ga0268264_1000067421 406
28 3300028794 Ga0307515_10000001 Ga0307515_100000012908 406
29 3300031251 Ga0265327_10021587 Ga0265327_100215872 406
30 3300033180 Ga0307510_10002234 Ga0307510_1000223418 406
31 3300046507 Ga0495606_0007647 Ga0495606_0007647_2831_4051 406
32 3300046524 Ga0495648_0015412 Ga0495648_0015412_598_1818 406
33 3300046616 Ga0495668_0000950 Ga0495668_0000950_23221_24441 406
34 3300046648 Ga0495611_0000590 Ga0495611_0000590_5503_6723 406
35 3300047443 Ga0495687_000144 Ga0495687_000144_90738_91958 406
36 3300048919 Ga0496116_0021149 Ga0496116_0021149_3004_4224 406
37 3300048920 Ga0496117_0003071 Ga0496117_0003071_8999_10219 406
38 3300048925 Ga0496122_0005541 Ga0496122_0005541_5474_6694 406
39 iso_pu_bacteria 2773857763 2774398132 406
40 iso_pu_bacteria 2964326757 2964327046 406
41 iso_pu_bacteria 8057345674 8057346891 406
42 3300003320 rootH2_10008804 rootH2_100088046 407
43 3300003323 rootH1_10341278 rootH1_103412782 407
44 3300003761 Ga0055535_1003470 Ga0055535_10034702 407
45 3300005262 Ga0065165_1014364 Ga0065165_10143642 407
46 3300005337 Ga0070682_100028989 Ga0070682_1000289892 407
47 3300005339 Ga0070660_100030255 Ga0070660_1000302554 407
48 3300005458 Ga0070681_10116721 Ga0070681_101167211 407
49 3300005535 Ga0070684_100053489 Ga0070684_1000534892 407
50 3300005614 Ga0068856_100098519 Ga0068856_1000985192 407
51 3300005616 Ga0068852_100151244 Ga0068852_1001512442 407
52 3300005841 Ga0068863_100002626 Ga0068863_1000026268 407
53 3300005841 Ga0068863_100124457 Ga0068863_1001244572 407
54 3300009093 Ga0105240_10000242 Ga0105240_1000024262 407
55 3300009093 Ga0105240_10000339 Ga0105240_1000033944 407
56 3300009174 Ga0105241_10010284 Ga0105241_100102842 407
57 3300009545 Ga0105237_10018831 Ga0105237_100188314 407
58 3300009545 Ga0105237_10121589 Ga0105237_101215892 407
59 3300009551 Ga0105238_10330408 Ga0105238_103304082 407
60 3300010375 Ga0105239_10047327 Ga0105239_100473275 407
61 3300013100 Ga0157373_10017992 Ga0157373_100179925 407
62 3300013102 Ga0157371_10212845 Ga0157371_102128451 407
63 3300013104 Ga0157370_10000896 Ga0157370_1000089612 407
64 3300013105 Ga0157369_10021750 Ga0157369_100217505 407
65 3300013307 Ga0157372_10067747 Ga0157372_100677475 407
66 3300014497 Ga0182008_10000462 Ga0182008_1000046225 407
67 3300015261 Ga0182006_1000403 Ga0182006_100040317 407
68 3300017792 Ga0163161_10000700 Ga0163161_1000070015 407
69 3300025242 Ga0209258_100160 Ga0209258_10016039 407
70 3300025254 Ga0209148_1000153 Ga0209148_100015387 407
71 3300025913 Ga0207695_10000066 Ga0207695_10000066212 407
72 3300025913 Ga0207695_10000469 Ga0207695_1000046945 407
73 3300025913 Ga0207695_10003298 Ga0207695_1000329817 407
74 3300025914 Ga0207671_10114922 Ga0207671_101149222 407
75 3300025919 Ga0207657_10006561 Ga0207657_100065613 407
76 3300025949 Ga0207667_10006165 Ga0207667_1000616515 407
77 3300026078 Ga0207702_10075216 Ga0207702_100752162 407
78 3300026088 Ga0207641_10000391 Ga0207641_100003918 407
79 3300026088 Ga0207641_10025022 Ga0207641_100250224 407
80 3300028786 Ga0307517_10006315 Ga0307517_100063156 407
81 3300030521 Ga0307511_10000264 Ga0307511_100002648 407
82 3300031507 Ga0307509_10122055 Ga0307509_101220552 407
83 3300031730 Ga0307516_10000656 Ga0307516_100006562 407
84 3300035695 Ga0373927_0028117 Ga0373927_0028117_1172_2395 407
85 3300044683 Ga0466965_0008619 Ga0466965_0008619_912_2135 407
86 3300046660 Ga0495625_0102198 Ga0495625_0102198_315_1538 407
87 3300048925 Ga0496122_0003701 Ga0496122_0003701_3239_4462 407
88 3300048928 Ga0496125_0048641 Ga0496125_0048641_1982_3205 407
89 3300053088 Ga0500644_0000295 Ga0500644_0000295_13693_14916 407
90 3300053092 Ga0500583_0011528 Ga0500583_0011528_329_1552 407
91 3300053136 Ga0500559_0019837 Ga0500559_0019837_658_1881 407
92 3300053142 Ga0500577_0007554 Ga0500577_0007554_1457_2680 407
93 3300053153 Ga0500616_0008524 Ga0500616_0008524_5036_6259 407
94 3300053160 Ga0500633_0008459 Ga0500633_0008459_84_1307 407
95 3300005288 Ga0065714_10087922 Ga0065714_100879222 408
96 3300005327 Ga0070658_10000034 Ga0070658_100000347 408
97 3300005327 Ga0070658_10004915 Ga0070658_100049153 408
98 3300005338 Ga0068868_100060846 Ga0068868_1000608462 408
99 3300005563 Ga0068855_100296099 Ga0068855_1002960992 408
100 3300005577 Ga0068857_100011602 Ga0068857_1000116026 408
101 3300005614 Ga0068856_100016780 Ga0068856_1000167805 408
102 3300005616 Ga0068852_100001148 Ga0068852_1000011486 408
103 3300005616 Ga0068852_100107833 Ga0068852_1001078332 408
104 3300005834 Ga0068851_10000027 Ga0068851_1000002767 408
105 3300005843 Ga0068860_100018459 Ga0068860_1000184596 408
106 3300009093 Ga0105240_10004968 Ga0105240_1000496812 408
107 3300009093 Ga0105240_10026326 Ga0105240_100263264 408
108 3300009098 Ga0105245_10033496 Ga0105245_100334964 408
109 3300009174 Ga0105241_10002160 Ga0105241_100021606 408
110 3300009545 Ga0105237_10000442 Ga0105237_1000044245 408
111 3300009545 Ga0105237_10007817 Ga0105237_100078178 408
112 3300009545 Ga0105237_10008573 Ga0105237_100085735 408
113 3300009551 Ga0105238_10020993 Ga0105238_100209933 408
114 3300010375 Ga0105239_10185478 Ga0105239_101854782 408
115 3300013104 Ga0157370_10006184 Ga0157370_100061848 408
116 3300013104 Ga0157370_10016705 Ga0157370_100167056 408
117 3300013105 Ga0157369_10049553 Ga0157369_100495532 408
118 3300013307 Ga0157372_10025395 Ga0157372_100253953 408
119 3300025254 Ga0209148_1001149 Ga0209148_100114911 408
120 3300025321 Ga0207656_10000001 Ga0207656_10000001942 408
121 3300025904 Ga0207647_10007141 Ga0207647_100071412 408
122 3300025909 Ga0207705_10000001 Ga0207705_10000001318 408
123 3300025909 Ga0207705_10015152 Ga0207705_100151522 408
124 3300025911 Ga0207654_10000001 Ga0207654_10000001241 408
125 3300025913 Ga0207695_10015559 Ga0207695_100155594 408
126 3300025913 Ga0207695_10066085 Ga0207695_100660852 408
127 3300025913 Ga0207695_10073791 Ga0207695_100737912 408
128 3300025914 Ga0207671_10000001 Ga0207671_10000001941 408
129 3300025914 Ga0207671_10002372 Ga0207671_100023722 408
130 3300025914 Ga0207671_10026237 Ga0207671_100262372 408
131 3300025924 Ga0207694_10000222 Ga0207694_1000022226 408
132 3300025924 Ga0207694_10010227 Ga0207694_100102275 408
133 3300025949 Ga0207667_10001217 Ga0207667_1000121718 408
134 3300025949 Ga0207667_10261670 Ga0207667_102616702 408
135 3300026023 Ga0207677_10136567 Ga0207677_101365672 408
136 3300026116 Ga0207674_10044840 Ga0207674_100448402 408
137 3300026142 Ga0207698_10001364 Ga0207698_100013648 408
138 3300026142 Ga0207698_10004729 Ga0207698_100047295 408
139 3300028381 Ga0268264_10013103 Ga0268264_100131032 408
140 3300031649 Ga0307514_10004426 Ga0307514_100044262 408
141 3300032004 Ga0307414_10023581 Ga0307414_100235812 408
142 3300046492 Ga0495585_0052099 Ga0495585_0052099_256_1575 408
143 3300049569 Ga0501032_0073967 Ga0501032_0073967_440_1741 408
144 3300049570 Ga0501033_0004539 Ga0501033_0004539_5904_7205 408
145 3300049571 Ga0501034_0056606 Ga0501034_0056606_24_1367 408
146 3300049571 Ga0501034_0169146 Ga0501034_0169146_390_1691 408
147 3300049572 Ga0501036_0065071 Ga0501036_0065071_574_1875 408
148 3300049579 Ga0501043_0008756 Ga0501043_0008756_1006_2307 408
149 3300049581 Ga0501047_0079889 Ga0501047_0079889_86_1387 408
150 3300049588 Ga0501072_0011359 Ga0501072_0011359_2891_4234 408
151 3300053093 Ga0500651_0004067 Ga0500651_0004067_1158_2453 408
152 3300053153 Ga0500616_0003177 Ga0500616_0003177_2870_4213 408
153 3300053155 Ga0500620_000030 Ga0500620_000030_6885_8225 408
154 3300053155 Ga0500620_014916 Ga0500620_014916_778_2073 408
155 2162886007 SwRhRL2b_contig_2775884 SwRhRL2b_0411.00003560 409
156 2162886007 SwRhRL2b_contig_320635 SwRhRL2b_0729.00007570 409
157 3300001979 JGI24740J21852_10002244 JGI24740J21852_100022442 409
158 3300002738 JGI25154J39366_1000012 JGI25154J39366_1000012223 409
159 3300002741 JGI25157J39369_1006194 JGI25157J39369_10061942 409
160 3300005288 Ga0065714_10003685 Ga0065714_100036854 409
161 3300005288 Ga0065714_10076824 Ga0065714_100768242 409
162 3300005289 Ga0065704_10000252 Ga0065704_100002525 409
163 3300005289 Ga0065704_10075791 Ga0065704_100757915 409
164 3300009093 Ga0105240_10015198 Ga0105240_100151984 409
165 3300009093 Ga0105240_10175965 Ga0105240_101759652 409
166 3300010375 Ga0105239_10002087 Ga0105239_1000208710 409
167 3300013100 Ga0157373_10013358 Ga0157373_100133584 409
168 3300013102 Ga0157371_10000707 Ga0157371_100007074 409
169 3300013102 Ga0157371_10010532 Ga0157371_100105324 409
170 3300013104 Ga0157370_10023399 Ga0157370_100233994 409
171 3300014497 Ga0182008_10000047 Ga0182008_1000004797 409
172 3300015261 Ga0182006_1002070 Ga0182006_10020706 409
173 3300025246 Ga0209646_1000009 Ga0209646_100000950 409
174 3300025250 Ga0209026_1000188 Ga0209026_100018850 409
175 3300025297 Ga0209758_1008296 Ga0209758_10082964 409
176 3300025302 Ga0207426_1000564 Ga0207426_100056410 409
177 3300031911 Ga0307412_10000001 Ga0307412_10000001680 409
178 3300032004 Ga0307414_10005255 Ga0307414_100052555 409
179 3300032004 Ga0307414_10081979 Ga0307414_100819792 409
180 3300032004 Ga0307414_10187645 Ga0307414_101876452 409
181 3300033180 Ga0307510_10000497 Ga0307510_100004979 409
182 3300047472 Ga0495686_0000004 Ga0495686_0000004_690266_691495 409
183 3300053093 Ga0500651_0000373 Ga0500651_0000373_13211_14440 409
184 3300053131 Ga0500652_013347 Ga0500652_013347_513_1742 409

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13378

MR_MLE_C

Enolase C-terminal domain-like

200

417

0.97

PF02746

MR_MLE_N

Mandelate racemase / muconate lactonizing enzyme, N-terminal domain

2

136

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
1yey-assembly4.cif.gz_D crystal structure of l-fuconate dehydratase from xanthomonas campestris pv. campestris str. atcc 33913 0.9477 1 407
1yey-assembly3.cif.gz_C crystal structure of l-fuconate dehydratase from xanthomonas campestris pv. campestris str. atcc 33913 0.9462 2 407
4ip5-assembly1.cif.gz_B crystal structure of l-fuconate dehydratase from silicibacter sp. tm1040 liganded with mg and d-erythronohydroxamate 0.9427 2 406
1yey-assembly4.cif.gz_D crystal structure of l-fuconate dehydratase from xanthomonas campestris pv. campestris str. atcc 33913 0.9409 1 407
4a35-assembly1.cif.gz_A-2 crystal structure of human mitochondrial enolase superfamily member 1 (enosf1) 0.9402 2 406
ID Description Score Start End Superfamily
1yeyA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9533 128 404 3.20.20.120
1yeyB02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9499 179 404 3.20.20.120
4h19A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9399 175 406 3.20.20.120
3ugvE02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9048 178 406 3.20.20.120
4h19A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.8978 175 406 3.20.20.120
ID Description Score Start End GO Terms
AF-A0A3T1DY06-F1-model_v4 deleted 0.9765 243 347
AF-A0A2V8QZL8-F1-model_v4 Fuconate dehydratase 0.9631 179 407 GO:0000287
GO:0009063
GO:0016052
GO:0016836
AF-J3HA68-F1-model_v4 deleted 0.963 126 407
AF-A0A537NJY2-F1-model_v4 Mandelate racemase 0.9607 191 346 GO:0000287
GO:0009063
GO:0016052
GO:0016836
AF-S4RJN1-F1-model_v4 Enolase superfamily member 1 0.9604 176 365 GO:0000287
GO:0009063
GO:0016052
GO:0016836

Feature Viewer

pLDDT pTM Quality
90.76 0.91 High
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Predicted Structure (AlphaFold2)

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