F281847

General Info

Members Datasets Scaffolds Average Seq Length
184 166 368 325

Family's Representative Sequence

Representative Sequence 3300003762|Ga0055542_1000073|Ga0055542_100007397
Length 355
Sequence MTGHLNIDRARLWQQSLPAGRAINGAFMETFKAVRVTQEEGKLAATVANLSDADLDSGDVTVAVEYSTVNYKDGLAITGLGGFIKRFPMVPGIDLAGTVLASSNPKFQAGDKVVLNGYEAGVTHHGGFAQRARVRGDWLVKLPPGLSTRQAAAIGTAGFAAMLSVLALEHGGVRDGEVLVTGAAGGVGSVAIAILAKLGYRVLASTGRSSEEAYLRHLGAAEIIDRASLSAAAQRPLGAERWSGAVDTVGSHTLVNVLAQTRYGGTVSACGLAQGMDLPGSMAPFILRGVTLAGIDTVNAPMHVRERAWARLASDLDPGLLEGMVSTVGLGEAAARAVQVLKGTVRGRTLVDVNL

Samples

Sample ID Description Type Environment
1 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
6 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
7 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
8 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
9 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
10 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
15 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
18 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
19 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
32 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
33 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
34 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
37 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
38 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
39 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
53 3300016635 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A10 Metagenome Rhizosphere
54 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
55 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
63 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
66 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
81 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
82 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
83 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
84 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
85 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
86 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
87 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
88 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
89 3300039145 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Metagenome Unclassified
90 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
91 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
92 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
93 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
94 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
95 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
96 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
97 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
98 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
99 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
100 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
101 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
102 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
103 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
104 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
105 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
106 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
107 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
108 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
111 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
112 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
113 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
116 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
117 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
118 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
119 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
120 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
121 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
122 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
123 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
127 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
128 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
129 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
130 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
131 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
132 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
133 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
134 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
135 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
136 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
137 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
138 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
139 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
140 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
141 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
144 2562617112 Burkholderia sp. BT03 Isolate Rhizosphere
145 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
146 2711768613 Burkholderia sp. BT03 Isolate Rhizosphere
147 2738541277 Variovorax sp. GV051 Isolate Unclassified
148 2738543019 Variovorax sp. GV040 Isolate Unclassified
149 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
150 2811994881 Pseudomonas sp. SLBN-26 Isolate Unclassified
151 2818991446 Variovorax sp. 1180 Isolate Unclassified
152 2840878972 Albibacillus kandeliae J95 Isolate Rhizosphere
153 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
154 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
155 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
156 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
157 2923519811 Pseudomonas otitidis SLBN-103 Isolate Rhizosphere
158 2928037797 Variovorax sp. 1126 Isolate Unclassified
159 2928044640 Variovorax sp. 1128 Isolate Unclassified
160 2928051484 Variovorax sp. 1133 Isolate Unclassified
161 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
162 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
163 2945972063 Variovorax paradoxus W2I8 Isolate Rhizosphere
164 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
165 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
166 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.5
Metatranscriptomes 0
Isolates 12.5

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.76
Nodule 1.09
Rhizoplane 6.52
Rhizosphere 61.41
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055542_1000073 3300003762 Bacteria 145255
2 JGI24740J21852_10000452 3300001979 Bacteria 17602
3 rootH1_10048431 3300003316 Bacteria 5696
4 rootH2_10133249 3300003320 Bacteria 2900
5 Ga0055535_1000470 3300003761 Bacteria 36908
6 Ga0055537_1000762 3300003773 Bacteria 16473
7 Ga0055534_1000032 3300003784 Bacteria 118890
8 Ga0055528_1002445 3300003790 Bacteria 9942
9 Ga0065165_1002389 3300005262 Bacteria 16130
10 Ga0065704_10080923 3300005289 Bacteria 3854
11 Ga0070658_10133247 3300005327 Bacteria 2072
12 Ga0068869_100106313 3300005334 Bacteria 2129
13 Ga0070689_100000009 3300005340 Bacteria 238551
14 Ga0070692_10057099 3300005345 Bacteria 2046
15 Ga0070675_100000315 3300005354 Bacteria 32531
16 Ga0070673_100133043 3300005364 Bacteria 2090
17 Ga0070714_100045909 3300005435 Bacteria 3704
18 Ga0070711_100032802 3300005439 Bacteria 3455
19 Ga0070678_100183997 3300005456 Bacteria 1713
20 Ga0070681_10005989 3300005458 Bacteria 11783
21 Ga0068867_100106958 3300005459 Bacteria 2143
22 Ga0070672_100232586 3300005543 Bacteria 1549
23 Ga0070665_100170224 3300005548 Bacteria 2179
24 Ga0068855_100058889 3300005563 Bacteria 4496
25 Ga0068854_100330256 3300005578 Bacteria 1242
26 Ga0068852_100025522 3300005616 Bacteria 4790
27 Ga0068852_100233296 3300005616 Bacteria 1755
28 Ga0068851_10021999 3300005834 Bacteria 3101
29 Ga0068863_100465207 3300005841 Bacteria 1242
30 Ga0068858_100014812 3300005842 Bacteria 7337
31 Ga0081455_10109858 3300005937 Bacteria 2194
32 Ga0075368_10015967 3300006042 Bacteria 2791
33 Ga0075363_100012131 3300006048 Bacteria 4145
34 Ga0075362_10023261 3300006177 Bacteria 2620
35 Ga0075369_10001848 3300006186 Bacteria 7394
36 Ga0075366_10010225 3300006195 Bacteria 5264
37 Ga0075370_10098790 3300006353 Bacteria 1688
38 Ga0099826_10045672 3300006948 Bacteria 2992
39 Ga0105251_10000020 3300009011 Bacteria 138675
40 Ga0105244_10059668 3300009036 Bacteria 1923
41 Ga0111539_10684942 3300009094 Bacteria 1193
42 Ga0105245_10151917 3300009098 Bacteria 2190
43 Ga0105243_10009168 3300009148 Bacteria 7555
44 Ga0105243_10327247 3300009148 Bacteria 1399
45 Ga0105242_10002383 3300009176 Bacteria 14811
46 Ga0105248_10099971 3300009177 Bacteria 3268
47 Ga0157371_10000086 3300013102 Bacteria 146397
48 Ga0157371_10001149 3300013102 Bacteria 28495
49 Ga0157371_10012257 3300013102 Bacteria 6564
50 Ga0157370_10005092 3300013104 Bacteria 14829
51 Ga0157370_10130466 3300013104 Bacteria 2344
52 Ga0157369_10033467 3300013105 Bacteria 5647
53 Ga0157378_10539105 3300013297 Bacteria 1171
54 Ga0163162_10112818 3300013306 Bacteria 2817
55 Ga0163163_10385263 3300014325 Bacteria 1460
56 Ga0157380_10408114 3300014326 Bacteria 1291
57 Ga0182006_1010481 3300015261 Bacteria 4119
58 Ga0183361_10006 3300016635 Bacteria 368532
59 Ga0163161_10059725 3300017792 Bacteria 2774
60 Ga0209672_100195 3300025228 Bacteria 48946
61 Ga0209147_101700 3300025229 Bacteria 7152
62 Ga0209258_100069 3300025242 Bacteria 280496
63 Ga0209148_1000076 3300025254 Bacteria 301449
64 Ga0209565_1000039 3300025263 Bacteria 278026
65 Ga0209673_1001040 3300025273 Bacteria 32486
66 Ga0209673_1003221 3300025273 Bacteria 9879
67 Ga0209675_1000030 3300025291 Bacteria 278026
68 Ga0209025_1015656 3300025294 Bacteria 4551
69 Ga0209564_1008916 3300025295 Bacteria 4865
70 Ga0209050_1000638 3300025298 Bacteria 54267
71 Ga0207426_1000737 3300025302 Bacteria 37388
72 Ga0207656_10024471 3300025321 Bacteria 2442
73 Ga0207662_10131627 3300025918 Bacteria 1578
74 Ga0207657_10356313 3300025919 Bacteria 1153
75 Ga0207649_10223866 3300025920 Bacteria 1342
76 Ga0207659_10104782 3300025926 Bacteria 2139
77 Ga0207659_10317644 3300025926 Bacteria 1284
78 Ga0207687_10457061 3300025927 Bacteria 1060
79 Ga0207700_10093530 3300025928 Bacteria 2379
80 Ga0207690_10164956 3300025932 Bacteria 1655
81 Ga0207709_10004317 3300025935 Bacteria 8235
82 Ga0207689_10023694 3300025942 Bacteria 5148
83 Ga0207679_10103431 3300025945 Bacteria 2232
84 Ga0207667_10182244 3300025949 Bacteria 2156
85 Ga0207703_10034763 3300026035 Bacteria 4001
86 Ga0207648_10043619 3300026089 Bacteria 3937
87 Ga0209282_1000186 3300027666 Bacteria 33086
88 Ga0265328_10073532 3300031239 Bacteria 1257
89 Ga0265327_10000766 3300031251 Bacteria 49728
90 Ga0265327_10001364 3300031251 Bacteria 31478
91 Ga0265316_10004199 3300031344 Bacteria 14402
92 Ga0307405_10019650 3300031731 Bacteria 3758
93 Ga0307414_10052629 3300032004 Bacteria 2834
94 Ga0307414_10084355 3300032004 Bacteria 2336
95 Ga0307411_10007414 3300032005 Bacteria 5587
96 Ga0373933_0434065 3300035724 Bacteria 858
97 Ga0400490_18166 3300038726 Bacteria 34168
98 Ga0237816_00282 3300039145 Bacteria 4321
99 Ga0466965_0143950 3300044683 Bacteria 1243
100 Ga0466959_0068458 3300045049 Bacteria 2572
101 Ga0466967_0020796 3300045976 Bacteria 5315
102 Ga0495603_0002527 3300046455 Bacteria 10769
103 Ga0495605_0081100 3300046474 Bacteria 1517
104 Ga0495583_0007308 3300046506 Bacteria 6978
105 Ga0495632_0002064 3300046519 Bacteria 15767
106 Ga0495648_0140338 3300046524 Bacteria 1272
107 Ga0495622_0016122 3300046557 Bacteria 3478
108 Ga0495625_0000639 3300046660 Bacteria 50372
109 Ga0495661_0008554 3300046665 Bacteria 7074
110 Ga0495670_0082423 3300046691 Bacteria 1640
111 Ga0495674_0011631 3300047319 Bacteria 8298
112 Ga0495672_0003045 3300047320 Bacteria 14705
113 Ga0495683_0027069 3300047323 Bacteria 2932
114 Ga0495673_0061075 3300047469 Bacteria 1615
115 Ga0495673_0084277 3300047469 Bacteria 1310
116 Ga0495626_0055780 3300048091 Bacteria 1810
117 Ga0496100_0004021 3300048903 Bacteria 7740
118 Ga0496101_0013904 3300048904 Bacteria 5403
119 Ga0496101_0075826 3300048904 Bacteria 2476
120 Ga0496102_0005193 3300048905 Bacteria 11056
121 Ga0496103_0002792 3300048906 Bacteria 10861
122 Ga0496104_0091454 3300048907 Bacteria 2908
123 Ga0496105_0040104 3300048908 Bacteria 3860
124 Ga0496107_0154801 3300048910 Bacteria 1697
125 Ga0496112_0022986 3300048915 Bacteria 5949
126 Ga0496113_0006330 3300048916 Bacteria 7492
127 Ga0496114_0001023 3300048917 Bacteria 21002
128 Ga0496114_0006802 3300048917 Bacteria 9007
129 Ga0496117_0006926 3300048920 Bacteria 11235
130 Ga0496117_0118512 3300048920 Bacteria 1632
131 Ga0496118_0007981 3300048921 Bacteria 11064
132 Ga0496118_0041086 3300048921 Bacteria 3667
133 Ga0496121_0005156 3300048924 Bacteria 16974
134 Ga0496121_0045130 3300048924 Bacteria 3790
135 Ga0496123_0256604 3300048926 Bacteria 859
136 Ga0496124_0091183 3300048927 Bacteria 2484
137 Ga0496126_0157998 3300048929 Bacteria 1939
138 Ga0501034_0222807 3300049571 Bacteria 1838
139 Ga0501037_0292909 3300049573 Bacteria 1132
140 Ga0501047_0005461 3300049581 Bacteria 11965
141 Ga0501047_0266730 3300049581 Bacteria 1559
142 Ga0501067_0137568 3300049583 Bacteria 1360
143 Ga0501069_0008966 3300049585 Bacteria 5277
144 Ga0501072_0203530 3300049588 Bacteria 1578
145 Ga0501073_0002018 3300049589 Bacteria 15166
146 Ga0501074_0006940 3300049590 Bacteria 8177
147 Ga0501249_000394 3300049679 Bacteria 11307
148 Ga0501079_0196541 3300049741 Bacteria 1574
149 Ga0501080_0026618 3300049742 Bacteria 5373
150 Ga0501080_0091619 3300049742 Bacteria 2823
151 Ga0501083_0001282 3300049744 Bacteria 17014
152 Ga0501044_0147739 3300049823 Bacteria 2334
153 Ga0501044_0221650 3300049823 Bacteria 1842
154 nmdc:mga03n38_5384_c1 3300050490 Bacteria 4352
155 nmdc:mga07m45_17178_c1 3300050496 Bacteria 3881
156 nmdc:mga0sz30_33272_c1 3300050516 Bacteria 2142
157 Ga0495601_0142513 3300053077 Bacteria 1563
158 Ga0500610_0000484 3300053079 Bacteria 12265
159 Ga0500641_0006518 3300053096 Bacteria 4141
160 Ga0501084_0233147 3300054114 Bacteria 1554
161 Ga0501082_0096039 3300060353 Bacteria 2562
162 2563058549 2562617112 Bacteria 10918404
163 2644304815 2643221654 Bacteria 5273570
164 2713476802 2711768613 Bacteria 11048459
165 2738720856 2738541277 Bacteria 7458140
166 2739280055 2738543019 Bacteria 7459457
167 2792835825 2791355137 Bacteria 9654227
168 2812367125 2811994881 Bacteria 6298475
169 2819598401 2818991446 Bacteria 7757362
170 2840882098 2840878972 Bacteria 5483153
171 2848551534 2848551377 Bacteria 3720646
172 2857731542 2857729791 Bacteria 4040535
173 2887376633 2887375801 Bacteria 5334027
174 2904621464 2904615490 Bacteria 10047340
175 2923521166 2923519811 Bacteria 6298479
176 2928044114 2928037797 Bacteria 7273642
177 2928050953 2928044640 Bacteria 7271509
178 2928057207 2928051484 Bacteria 7773759
179 2928069277 2928064002 Bacteria 7419480
180 2928124560 2928121344 Bacteria 3972376
181 2945976181 2945972063 Bacteria 6086495
182 2979095364 2979089926 Bacteria 5670289
183 2979097618 2979095461 Bacteria 5669583
184 2987609219 2987605356 Bacteria 4187822
185 Ga0055542_1000073
186 JGI24740J21852_10000452
187 rootH1_10048431
188 rootH2_10133249
189 Ga0055535_1000470
190 Ga0055537_1000762
191 Ga0055534_1000032
192 Ga0055528_1002445
193 Ga0065165_1002389
194 Ga0065704_10080923
195 Ga0070658_10133247
196 Ga0068869_100106313
197 Ga0070689_100000009
198 Ga0070692_10057099
199 Ga0070675_100000315
200 Ga0070673_100133043
201 Ga0070714_100045909
202 Ga0070711_100032802
203 Ga0070678_100183997
204 Ga0070681_10005989
205 Ga0068867_100106958
206 Ga0070672_100232586
207 Ga0070665_100170224
208 Ga0068855_100058889
209 Ga0068854_100330256
210 Ga0068852_100025522
211 Ga0068852_100233296
212 Ga0068851_10021999
213 Ga0068863_100465207
214 Ga0068858_100014812
215 Ga0081455_10109858
216 Ga0075368_10015967
217 Ga0075363_100012131
218 Ga0075362_10023261
219 Ga0075369_10001848
220 Ga0075366_10010225
221 Ga0075370_10098790
222 Ga0099826_10045672
223 Ga0105251_10000020
224 Ga0105244_10059668
225 Ga0111539_10684942
226 Ga0105245_10151917
227 Ga0105243_10009168
228 Ga0105243_10327247
229 Ga0105242_10002383
230 Ga0105248_10099971
231 Ga0157371_10000086
232 Ga0157371_10001149
233 Ga0157371_10012257
234 Ga0157370_10005092
235 Ga0157370_10130466
236 Ga0157369_10033467
237 Ga0157378_10539105
238 Ga0163162_10112818
239 Ga0163163_10385263
240 Ga0157380_10408114
241 Ga0182006_1010481
242 Ga0183361_10006
243 Ga0163161_10059725
244 Ga0209672_100195
245 Ga0209147_101700
246 Ga0209258_100069
247 Ga0209148_1000076
248 Ga0209565_1000039
249 Ga0209673_1001040
250 Ga0209673_1003221
251 Ga0209675_1000030
252 Ga0209025_1015656
253 Ga0209564_1008916
254 Ga0209050_1000638
255 Ga0207426_1000737
256 Ga0207656_10024471
257 Ga0207662_10131627
258 Ga0207657_10356313
259 Ga0207649_10223866
260 Ga0207659_10104782
261 Ga0207659_10317644
262 Ga0207687_10457061
263 Ga0207700_10093530
264 Ga0207690_10164956
265 Ga0207709_10004317
266 Ga0207689_10023694
267 Ga0207679_10103431
268 Ga0207667_10182244
269 Ga0207703_10034763
270 Ga0207648_10043619
271 Ga0209282_1000186
272 Ga0265328_10073532
273 Ga0265327_10000766
274 Ga0265327_10001364
275 Ga0265316_10004199
276 Ga0307405_10019650
277 Ga0307414_10052629
278 Ga0307414_10084355
279 Ga0307411_10007414
280 Ga0373933_0434065
281 Ga0400490_18166
282 Ga0237816_00282
283 Ga0466965_0143950
284 Ga0466959_0068458
285 Ga0466967_0020796
286 Ga0495603_0002527
287 Ga0495605_0081100
288 Ga0495583_0007308
289 Ga0495632_0002064
290 Ga0495648_0140338
291 Ga0495622_0016122
292 Ga0495625_0000639
293 Ga0495661_0008554
294 Ga0495670_0082423
295 Ga0495674_0011631
296 Ga0495672_0003045
297 Ga0495683_0027069
298 Ga0495673_0061075
299 Ga0495673_0084277
300 Ga0495626_0055780
301 Ga0496100_0004021
302 Ga0496101_0013904
303 Ga0496101_0075826
304 Ga0496102_0005193
305 Ga0496103_0002792
306 Ga0496104_0091454
307 Ga0496105_0040104
308 Ga0496107_0154801
309 Ga0496112_0022986
310 Ga0496113_0006330
311 Ga0496114_0001023
312 Ga0496114_0006802
313 Ga0496117_0006926
314 Ga0496117_0118512
315 Ga0496118_0007981
316 Ga0496118_0041086
317 Ga0496121_0005156
318 Ga0496121_0045130
319 Ga0496123_0256604
320 Ga0496124_0091183
321 Ga0496126_0157998
322 Ga0501034_0222807
323 Ga0501037_0292909
324 Ga0501047_0005461
325 Ga0501047_0266730
326 Ga0501067_0137568
327 Ga0501069_0008966
328 Ga0501072_0203530
329 Ga0501073_0002018
330 Ga0501074_0006940
331 Ga0501249_000394
332 Ga0501079_0196541
333 Ga0501080_0026618
334 Ga0501080_0091619
335 Ga0501083_0001282
336 Ga0501044_0147739
337 Ga0501044_0221650
338 nmdc:mga03n38_5384_c1
339 nmdc:mga07m45_17178_c1
340 nmdc:mga0sz30_33272_c1
341 Ga0495601_0142513
342 Ga0500610_0000484
343 Ga0500641_0006518
344 Ga0501084_0233147
345 Ga0501082_0096039
346 2563058549
347 2644304815
348 2713476802
349 2738720856
350 2739280055
351 2792835825
352 2812367125
353 2819598401
354 2840882098
355 2848551534
356 2857731542
357 2887376633
358 2904621464
359 2923521166
360 2928044114
361 2928050953
362 2928057207
363 2928069277
364 2928124560
365 2945976181
366 2979095364
367 2979097618
368 2987609219

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00107

ADH_zinc_N

Zinc-binding dehydrogenase

186

314

0.92

PF08240

ADH_N

Alcohol dehydrogenase GroES-like domain

56

144

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3nx4-assembly1.cif.gz_B crystal structure of the yhdh oxidoreductase from salmonella enterica in complex with nadp 0.9843 3 327
3nx4-assembly1.cif.gz_B crystal structure of the yhdh oxidoreductase from salmonella enterica in complex with nadp 0.9753 3 327
1o8c-assembly1.cif.gz_D crystal structure of e. coli k-12 yhdh with bound nadph 0.9751 3 328
5gxf-assembly1.cif.gz_B acryloyl-coa reductase acui from ruegeria pomeroyi dss-3 0.9726 1 329
5gxf-assembly1.cif.gz_B acryloyl-coa reductase acui from ruegeria pomeroyi dss-3 0.9697 1 329
ID Description Score Start End Superfamily
af_P26646_4_324_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9805 6 328 2.40.50.140
af_P26646_2_123_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.9772 4 125 3.90.180.10
af_P26646_4_324_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9745 6 328 2.40.50.140
af_Q2FVQ0_2_295_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.9647 35 326 3.90.180.10
af_Q2FVQ0_5_96_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.9616 40 128 3.90.180.10
ID Description Score Start End GO Terms
AF-A0A2S9FSW4-F1-model_v4 Oxidoreductase 0.9932 120 201 GO:0043957
AF-A0A3S4B4K9-F1-model_v4 Acrylyl-CoA reductase AcuI 0.9885 2 327 GO:0043957
AF-W0DZS2-F1-model_v4 Alcohol dehydrogenase 0.9884 2 327 GO:0043957
AF-A0A843SX44-F1-model_v4 Acryloyl-CoA reductase (EC 1.3.1.95) 0.9882 2 329 GO:0043957
AF-A0A536X5R6-F1-model_v4 Oxidoreductase 0.9881 1 327 GO:0043957

Map