F281689

General Info

Members Datasets Scaffolds Average Seq Length
183 141 366 348

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2862507626|2862513951
Length 409
Sequence RVPLIADHAPSPTTSTSPTAVPRRTAAPAVPAAPAVPAAPAVPSAIAAVHTALPPHRYAQADLTEPIGDLCLPPGADRAVLRRLHASAGVRTRHLALPIERYAGLRDFGLRNDAWLAIGLELGEEALTGALKRAGLAPADVDLLVCASITGVAAPSLDARLAGRVGLRPDVKRLPVFGLGCVAGAAGLARVHDHLLGHPDDTAVLLTVELCSLTLQHRDDRRANLVAGALFGDGAAALVARGAGGADGRESGGGRNDGEPDAAGPAPSVVATRSHLYPDTAPLLGWDIGAGGFRVVIDAGVPGVVRDHLGRHVRAFLAEHGLTADDIGTWVCHPGGPKVLSAVTDALGLPGDALESAWRSLATAGNMSSVSVLHILQGILEARRPEPGTWGLLLAMGPGFCSELVLLRW

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
15 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
16 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
17 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
18 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
19 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
20 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
21 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
22 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
23 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
24 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
25 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
38 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
39 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
40 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
41 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
42 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
43 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
46 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
47 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
48 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
49 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
50 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
51 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
52 3300033547 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 Metagenome Unclassified
53 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
54 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
55 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
56 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
57 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
58 3300036459 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
59 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
60 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
61 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
64 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
65 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
66 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
67 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
68 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
69 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
70 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
71 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
72 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
73 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
74 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
75 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
76 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
77 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
78 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
79 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
80 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
81 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
82 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
83 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
84 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
85 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
86 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
87 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
88 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
89 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
90 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
91 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
92 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
93 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
94 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
95 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
96 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
97 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
109 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
110 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
111 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
112 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
113 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
114 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
115 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
116 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
117 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
119 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
120 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
121 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
122 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
123 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
124 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
125 2643221548 Streptomyces sp. Root55 Isolate Unclassified
126 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
127 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
128 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
129 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
130 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
131 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
132 2884215851 Edaphobacter sp. 12200R-103 Isolate Rhizosphere
133 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
134 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
135 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
136 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
137 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
138 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
139 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
140 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
141 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.98
Metatranscriptomes 1.09
Isolates 10.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.55
Nodule 0
Rhizoplane 1.09
Rhizosphere 86.89
Stem 0
Stem Tuber 0
Unclassified 1.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10064475 3300005327 Bacteria 2988
2 Ga0070658_10290778 3300005327 Bacteria 1392
3 Ga0070683_100139683 3300005329 Bacteria 2295
4 Ga0070709_10000085 3300005434 Bacteria 70030
5 Ga0070709_10028039 3300005434 Bacteria 3355
6 Ga0070709_10033513 3300005434 Bacteria 3107
7 Ga0070714_100069473 3300005435 Bacteria 3042
8 Ga0070714_100228667 3300005435 Bacteria 1713
9 Ga0070713_100008492 3300005436 Bacteria 7286
10 Ga0070713_100088583 3300005436 Bacteria 2657
11 Ga0070713_100198509 3300005436 Bacteria 1811
12 Ga0070710_10024898 3300005437 Bacteria 3162
13 Ga0070711_100032236 3300005439 Bacteria 3483
14 Ga0070708_100056736 3300005445 Bacteria 3485
15 Ga0070663_100009285 3300005455 Bacteria 6086
16 Ga0070663_100027355 3300005455 Bacteria 3872
17 Ga0070707_100060006 3300005468 Bacteria 3647
18 Ga0070698_100000824 3300005471 Bacteria 33936
19 Ga0070698_100176617 3300005471 Bacteria 2075
20 Ga0068852_100349112 3300005616 Bacteria 1444
21 Ga0070717_10015702 3300006028 Bacteria 5853
22 Ga0070716_100017639 3300006173 Bacteria 3705
23 Ga0070716_100087612 3300006173 Bacteria 1876
24 Ga0070712_100102868 3300006175 Bacteria 2117
25 Ga0070712_100196581 3300006175 Bacteria 1581
26 Ga0075436_100000031 3300006914 Bacteria 89989
27 Ga0105249_10031548 3300009553 Bacteria 4792
28 Ga0157370_10017620 3300013104 Bacteria 7203
29 Ga0157369_10065731 3300013105 Bacteria 3903
30 Ga0157369_10192071 3300013105 Bacteria 2145
31 Ga0157369_10316563 3300013105 Unclassified 1622
32 Ga0157372_10143903 3300013307 Bacteria 2749
33 Ga0206353_11468558 3300020082 Bacteria 3818
34 Ga0213872_10006503 3300021361 Bacteria 5853
35 Ga0213875_10013814 3300021388 Bacteria 3954
36 Ga0213875_10023522 3300021388 Bacteria 2942
37 Ga0209758_1041741 3300025297 Bacteria 1710
38 Ga0207692_10127051 3300025898 Bacteria 1435
39 Ga0207699_10000083 3300025906 Bacteria 70819
40 Ga0207699_10017402 3300025906 Bacteria 3781
41 Ga0207699_10146267 3300025906 Bacteria 1558
42 Ga0207693_10085476 3300025915 Bacteria 2471
43 Ga0207663_10042621 3300025916 Bacteria 2774
44 Ga0207663_10083746 3300025916 Bacteria 2096
45 Ga0207646_10127700 3300025922 Bacteria 2287
46 Ga0207700_10001401 3300025928 Bacteria 13684
47 Ga0207700_10010277 3300025928 Bacteria 5894
48 Ga0207700_10020796 3300025928 Bacteria 4466
49 Ga0207700_10190477 3300025928 Bacteria 1723
50 Ga0207700_10338009 3300025928 Bacteria 1308
51 Ga0207664_10011853 3300025929 Bacteria 6218
52 Ga0207664_10041806 3300025929 Bacteria 3573
53 Ga0207664_10063363 3300025929 Bacteria 2955
54 Ga0207664_10131717 3300025929 Bacteria 2105
55 Ga0207664_10169244 3300025929 Bacteria 1869
56 Ga0207664_10177615 3300025929 Bacteria 1826
57 Ga0207665_10027080 3300025939 Bacteria 3787
58 Ga0207665_10031610 3300025939 Bacteria 3503
59 Ga0207712_10051561 3300025961 Bacteria 2878
60 Ga0207678_10017508 3300026067 Bacteria 6293
61 Ga0207678_10053914 3300026067 Bacteria 3464
62 Ga0207674_10135944 3300026116 Bacteria 2420
63 Ga0207698_10047086 3300026142 Bacteria 3263
64 Ga0265337_1001601 3300028556 Bacteria 11053
65 Ga0265326_10001828 3300028558 Bacteria 7322
66 Ga0265319_1009521 3300028563 Bacteria 4131
67 Ga0265334_10000262 3300028573 Bacteria 29692
68 Ga0265318_10008610 3300028577 Bacteria 4530
69 Ga0265323_10022397 3300028653 Bacteria 2414
70 Ga0265336_10006319 3300028666 Bacteria 4281
71 Ga0265338_10002395 3300028800 Bacteria 28217
72 Ga0265338_10003537 3300028800 Bacteria 21865
73 Ga0265338_10015463 3300028800 Bacteria 8379
74 Ga0265324_10004232 3300029957 Bacteria 6560
75 Ga0265332_10003637 3300031238 Bacteria 7387
76 Ga0265320_10042481 3300031240 Bacteria 2254
77 Ga0265340_10036313 3300031247 Bacteria 2442
78 Ga0265314_10008149 3300031711 Bacteria 9017
79 Ga0265342_10016944 3300031712 Bacteria 4747
80 Ga0316580_10036562 3300032139 Bacteria 1519
81 Ga0316212_1000636 3300033547 Bacteria 4392
82 Ga0373929_0000003 3300035085 Bacteria 575058
83 Ga0373956_0007409 3300035119 Bacteria 4417
84 Ga0316574_0037268 3300035398 Bacteria 2981
85 Ga0373924_0003898 3300035410 Bacteria 5174
86 Ga0373937_0086503 3300036401 Bacteria 2900
87 Ga0372808_006560 3300036459 Bacteria 1570
88 Ga0316584_0027775 3300036712 Bacteria 4166
89 Ga0373925_0000187 3300037068 Bacteria 68043
90 Ga0395900_0064003 3300037418 Bacteria 3781
91 Ga0436364_0013281 3300037853 Bacteria 12443
92 Ga0436364_0607169 3300037853 Bacteria 4110
93 Ga0436365_1127779 3300039437 Bacteria 2201
94 Ga0436361_0130309 3300039447 Unclassified 2085
95 Ga0436361_0159409 3300039447 Bacteria 43692
96 Ga0436362_0815891 3300039453 Unclassified 1786
97 Ga0451577_0025729 3300042876 Bacteria 5338
98 Ga0466969_0095084 3300044656 Bacteria 1408
99 Ga0466966_0045048 3300044684 Bacteria 2821
100 Ga0466959_0032140 3300045049 Bacteria 3884
101 Ga0495592_0002299 3300046454 Bacteria 13484
102 Ga0495582_0141862 3300046473 Bacteria 1362
103 Ga0495664_0102754 3300046477 Bacteria 1722
104 Ga0495583_0006415 3300046506 Bacteria 7696
105 Ga0495618_0009760 3300046514 Bacteria 5799
106 Ga0495628_0105544 3300046516 Bacteria 2170
107 Ga0495630_0087220 3300046517 Bacteria 2357
108 Ga0495652_0183274 3300046529 Bacteria 1604
109 Ga0495586_0019443 3300046535 Bacteria 3616
110 Ga0495645_0038785 3300046543 Bacteria 3474
111 Ga0495667_0007124 3300046559 Bacteria 7583
112 Ga0495634_0019168 3300046642 Bacteria 4862
113 Ga0495625_0024479 3300046660 Bacteria 4594
114 Ga0495635_0010159 3300046663 Bacteria 6583
115 Ga0495657_0028846 3300046675 Bacteria 3897
116 Ga0495599_0030510 3300046678 Bacteria 3382
117 Ga0495623_0050326 3300046679 Bacteria 2639
118 Ga0495646_0012117 3300046680 Bacteria 5483
119 Ga0495600_0058913 3300046809 Bacteria 2508
120 Ga0495604_0016770 3300047317 Bacteria 5860
121 Ga0495672_0001153 3300047320 Bacteria 26709
122 Ga0495602_0046199 3300048088 Bacteria 3935
123 Ga0495615_0000934 3300048090 Bacteria 4149
124 Ga0496102_0284058 3300048905 Bacteria 1560
125 Ga0496115_0035363 3300048918 Bacteria 3951
126 Ga0496126_0022760 3300048929 Bacteria 6087
127 Ga0495682_0009041 3300049460 Bacteria 3909
128 Ga0501031_0005639 3300049568 Bacteria 8159
129 Ga0501031_0005737 3300049568 Bacteria 8091
130 Ga0501032_0003687 3300049569 Bacteria 11634
131 Ga0501032_0061342 3300049569 Bacteria 2521
132 Ga0501033_0003097 3300049570 Bacteria 13810
133 Ga0501034_0010455 3300049571 Bacteria 9665
134 Ga0501036_0001302 3300049572 Bacteria 19115
135 Ga0501037_0011654 3300049573 Bacteria 6473
136 Ga0501037_0104810 3300049573 Bacteria 2039
137 Ga0501038_0002468 3300049574 Bacteria 17200
138 Ga0501039_0209046 3300049575 Bacteria 1535
139 Ga0501043_0013094 3300049579 Bacteria 6482
140 Ga0501046_0001610 3300049580 Bacteria 21590
141 Ga0501047_0010938 3300049581 Bacteria 8585
142 Ga0501067_0032213 3300049583 Bacteria 2909
143 Ga0501068_0036854 3300049584 Bacteria 2927
144 Ga0501070_0041544 3300049586 Bacteria 3831
145 Ga0501071_0043228 3300049587 Bacteria 3230
146 Ga0501073_0024644 3300049589 Bacteria 4320
147 Ga0501075_0000515 3300049591 Bacteria 23350
148 Ga0501077_0000595 3300049593 Bacteria 21883
149 Ga0501080_0010296 3300049742 Bacteria 8549
150 Ga0501080_0077092 3300049742 Bacteria 3100
151 Ga0501083_0001246 3300049744 Bacteria 17287
152 Ga0501035_0006048 3300049822 Bacteria 11397
153 Ga0501035_0028748 3300049822 Bacteria 5072
154 Ga0501035_0054304 3300049822 Bacteria 3580
155 Ga0501035_0176459 3300049822 Bacteria 1843
156 Ga0501044_0002842 3300049823 Bacteria 19709
157 Ga0501044_0023356 3300049823 Bacteria 6577
158 Ga0501044_0261148 3300049823 Bacteria 1670
159 nmdc:mga08x19_47_c1 3300050514 Bacteria 141509
160 Ga0495595_0016566 3300053084 Bacteria 3157
161 Ga0501084_0028409 3300054114 Bacteria 4675
162 Ga0501082_0000198 3300060353 Bacteria 52268
163 Ga0530510_0055369 3300061734 Bacteria 2865
164 2862513951 2862507626 Bacteria 9425308
165 2643760560 2643221548 Bacteria 8053412
166 2644459643 2643221682 Bacteria 6743283
167 2676496446 2675903060 Bacteria 10051191
168 2784585616 2784132148 Bacteria 8627943
169 2811846304 2808606982 Bacteria 7791042
170 2819699246 2818991463 Bacteria 7948711
171 2852638951 2852635781 Bacteria 8251373
172 2884217298 2884215851 Bacteria 4554841
173 2884698561 2884693830 Bacteria 11273186
174 2884701740 2884693830 Bacteria 11273186
175 2895446577 2895442618 Bacteria 11027144
176 2895451159 2895442618 Bacteria 11027144
177 2912723527 2912715099 Bacteria 9460473
178 2966604940 2966598605 Bacteria 7676064
179 3006325510 3006321560 Bacteria 8247479
180 8023625279 8023623736 Bacteria 8593882
181 8025536256 8025530807 Bacteria 8495698
182 8055073354 8055066027 Bacteria 9479577
183 8056669414 8056667051 Bacteria 6953971
184 Ga0070658_10064475
185 Ga0070658_10290778
186 Ga0070683_100139683
187 Ga0070709_10000085
188 Ga0070709_10028039
189 Ga0070709_10033513
190 Ga0070714_100069473
191 Ga0070714_100228667
192 Ga0070713_100008492
193 Ga0070713_100088583
194 Ga0070713_100198509
195 Ga0070710_10024898
196 Ga0070711_100032236
197 Ga0070708_100056736
198 Ga0070663_100009285
199 Ga0070663_100027355
200 Ga0070707_100060006
201 Ga0070698_100000824
202 Ga0070698_100176617
203 Ga0068852_100349112
204 Ga0070717_10015702
205 Ga0070716_100017639
206 Ga0070716_100087612
207 Ga0070712_100102868
208 Ga0070712_100196581
209 Ga0075436_100000031
210 Ga0105249_10031548
211 Ga0157370_10017620
212 Ga0157369_10065731
213 Ga0157369_10192071
214 Ga0157369_10316563
215 Ga0157372_10143903
216 Ga0206353_11468558
217 Ga0213872_10006503
218 Ga0213875_10013814
219 Ga0213875_10023522
220 Ga0209758_1041741
221 Ga0207692_10127051
222 Ga0207699_10000083
223 Ga0207699_10017402
224 Ga0207699_10146267
225 Ga0207693_10085476
226 Ga0207663_10042621
227 Ga0207663_10083746
228 Ga0207646_10127700
229 Ga0207700_10001401
230 Ga0207700_10010277
231 Ga0207700_10020796
232 Ga0207700_10190477
233 Ga0207700_10338009
234 Ga0207664_10011853
235 Ga0207664_10041806
236 Ga0207664_10063363
237 Ga0207664_10131717
238 Ga0207664_10169244
239 Ga0207664_10177615
240 Ga0207665_10027080
241 Ga0207665_10031610
242 Ga0207712_10051561
243 Ga0207678_10017508
244 Ga0207678_10053914
245 Ga0207674_10135944
246 Ga0207698_10047086
247 Ga0265337_1001601
248 Ga0265326_10001828
249 Ga0265319_1009521
250 Ga0265334_10000262
251 Ga0265318_10008610
252 Ga0265323_10022397
253 Ga0265336_10006319
254 Ga0265338_10002395
255 Ga0265338_10003537
256 Ga0265338_10015463
257 Ga0265324_10004232
258 Ga0265332_10003637
259 Ga0265320_10042481
260 Ga0265340_10036313
261 Ga0265314_10008149
262 Ga0265342_10016944
263 Ga0316580_10036562
264 Ga0316212_1000636
265 Ga0373929_0000003
266 Ga0373956_0007409
267 Ga0316574_0037268
268 Ga0373924_0003898
269 Ga0373937_0086503
270 Ga0372808_006560
271 Ga0316584_0027775
272 Ga0373925_0000187
273 Ga0395900_0064003
274 Ga0436364_0013281
275 Ga0436364_0607169
276 Ga0436365_1127779
277 Ga0436361_0130309
278 Ga0436361_0159409
279 Ga0436362_0815891
280 Ga0451577_0025729
281 Ga0466969_0095084
282 Ga0466966_0045048
283 Ga0466959_0032140
284 Ga0495592_0002299
285 Ga0495582_0141862
286 Ga0495664_0102754
287 Ga0495583_0006415
288 Ga0495618_0009760
289 Ga0495628_0105544
290 Ga0495630_0087220
291 Ga0495652_0183274
292 Ga0495586_0019443
293 Ga0495645_0038785
294 Ga0495667_0007124
295 Ga0495634_0019168
296 Ga0495625_0024479
297 Ga0495635_0010159
298 Ga0495657_0028846
299 Ga0495599_0030510
300 Ga0495623_0050326
301 Ga0495646_0012117
302 Ga0495600_0058913
303 Ga0495604_0016770
304 Ga0495672_0001153
305 Ga0495602_0046199
306 Ga0495615_0000934
307 Ga0496102_0284058
308 Ga0496115_0035363
309 Ga0496126_0022760
310 Ga0495682_0009041
311 Ga0501031_0005639
312 Ga0501031_0005737
313 Ga0501032_0003687
314 Ga0501032_0061342
315 Ga0501033_0003097
316 Ga0501034_0010455
317 Ga0501036_0001302
318 Ga0501037_0011654
319 Ga0501037_0104810
320 Ga0501038_0002468
321 Ga0501039_0209046
322 Ga0501043_0013094
323 Ga0501046_0001610
324 Ga0501047_0010938
325 Ga0501067_0032213
326 Ga0501068_0036854
327 Ga0501070_0041544
328 Ga0501071_0043228
329 Ga0501073_0024644
330 Ga0501075_0000515
331 Ga0501077_0000595
332 Ga0501080_0010296
333 Ga0501080_0077092
334 Ga0501083_0001246
335 Ga0501035_0006048
336 Ga0501035_0028748
337 Ga0501035_0054304
338 Ga0501035_0176459
339 Ga0501044_0002842
340 Ga0501044_0023356
341 Ga0501044_0261148
342 nmdc:mga08x19_47_c1
343 Ga0495595_0016566
344 Ga0501084_0028409
345 Ga0501082_0000198
346 Ga0530510_0055369
347 2862513951
348 2643760560
349 2644459643
350 2676496446
351 2784585616
352 2811846304
353 2819699246
354 2852638951
355 2884217298
356 2884698561
357 2884701740
358 2895446577
359 2895451159
360 2912723527
361 2966604940
362 3006325510
363 8023625279
364 8025536256
365 8055073354
366 8056669414

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08541

ACP_syn_III_C

3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal

317

409

0.95

PF08392

FAE1_CUT1_RppA

FAE1/Type III polyketide synthase-like protein

121

245

0.93

PF02797

Chal_sti_synt_C

Chalcone and stilbene synthases, C-terminal domain

268

409

0.9

PF00195

Chal_sti_synt_N

Chalcone and stilbene synthases, N-terminal domain

38

245

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jd3-assembly2.cif.gz_C crystal structure of mycobacterium tuberculosis pks11 reveals intermediates in the synthesis of methyl-branched alkylpyrones 0.9673 1 358
4jap-assembly2.cif.gz_A crystal structure of mycobacterium tuberculosis pks11 reveals intermediates in the synthesis of methyl-branched alkylpyrones 0.9635 1 358
4jd3-assembly2.cif.gz_C crystal structure of mycobacterium tuberculosis pks11 reveals intermediates in the synthesis of methyl-branched alkylpyrones 0.9619 1 358
4jap-assembly2.cif.gz_A crystal structure of mycobacterium tuberculosis pks11 reveals intermediates in the synthesis of methyl-branched alkylpyrones 0.9581 1 358
1u0m-assembly1.cif.gz_B crystal structure of 1,3,6,8-tetrahydroxynaphthalene synthase (thns) from streptomyces coelicolor a3(2): a bacterial type iii polyketide synthase (pks) provides insights into enzymatic control of reactive polyketide intermediates 0.9407 1 358
ID Description Score Start End Superfamily
4jaoA02 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9795 216 358 3.40.47.10
4jaoA02 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.953 216 358 3.40.47.10
af_P9WPF3_1_208_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9425 1 200 3.40.47.10
1u0mB02 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9359 216 358 3.40.47.10
1tedA02 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9348 216 356 3.40.47.10
ID Description Score Start End GO Terms
AF-A0A3N5FWU2-F1-model_v4 Type III polyketide synthase 0.9921 2 358 GO:0016747
GO:0030639
AF-A0A3S7UYL1-F1-model_v4 Chalcone/stilbene synthase family protein 0.9896 2 358 GO:0016747
GO:0030639
AF-W6K1S7-F1-model_v4 Alpha-pyrone synthesis polyketide synthase-like Pks11 (EC 2.3.1.-) 0.9893 217 357 GO:0016747
GO:0030639
AF-L7UHP5-F1-model_v4 Chalcone/stilbene synthase family protein 0.9885 2 358 GO:0016747
GO:0030639
AF-A0A372IKG2-F1-model_v4 Type III polyketide synthase 0.9856 1 358 GO:0016747
GO:0030639

Map