F281212

General Info

Members Datasets Scaffolds Average Seq Length
183 111 366 353

Family's Representative Sequence

Representative Sequence 3300039450|Ga0436363_0592054|Ga0436363_0592054_20_1201
Length 393
Sequence MVEKEQPRVAGAPEGGSRAVEERSSDPTGRGEGRRRAPHARLTIHDVARLSGVSIGTVSKALNNSGKLRLETRERVSAVAKQLGFRPNDLAQSLHRGQTFTVGVISTDSFGRFTMPIMEGLEECLSESRISVFMCNATDDPEREARHVESLIGKRVDGIVVTARRADRRARLEVHSPGLPVLYVFSQTDDPQPLCLLPDDRGGAILAAEHLVRLGRRHIAHVTGPERFEAVRLRHLGYRRALRKAGLEATQAFYLPGVWSEAWGREAVAQLFGERRPAPDAIFCGNDQIARGVADALRERGVRVPEAVAIVGFDNWEIVAQATRPPLTTIDMNLKELGREAGRRMLDLIAGKHLHGVRRLPCSLILRDSCGSPVPPPSAGEGEGPSAEPRSPG

Samples

Sample ID Description Type Environment
1 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
10 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
11 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
22 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
26 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
29 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
41 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
42 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
43 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
62 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
63 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
64 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
65 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
66 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
67 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
68 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
69 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
70 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
71 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
72 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
73 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
74 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
75 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
76 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
77 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
78 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
79 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
80 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
81 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
84 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
85 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
95 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
96 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
97 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
98 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
99 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
102 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
103 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
104 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
105 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
106 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
107 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
108 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
109 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
110 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
111 2643221662 Devosia sp. Root413D1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.45
Metatranscriptomes 0
Isolates 0.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.02
Nodule 0
Rhizoplane 0
Rhizosphere 82.51
Stem 0
Stem Tuber 0
Unclassified 1.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0436363_0592054 3300039450 Bacteria 4916
2 JGI25165J46597_1003056 3300003214 Bacteria 4548
3 Ga0070658_10006022 3300005327 Bacteria 9840
4 Ga0070683_100309515 3300005329 Bacteria 1503
5 Ga0070660_100059492 3300005339 Bacteria 2963
6 Ga0070661_100007963 3300005344 Bacteria 7320
7 Ga0070661_100106638 3300005344 Bacteria 2089
8 Ga0070661_100155205 3300005344 Bacteria 1732
9 Ga0070674_100011897 3300005356 Bacteria 5319
10 Ga0070708_100293834 3300005445 Bacteria 1530
11 Ga0068853_100001085 3300005539 Bacteria 19247
12 Ga0068853_100020869 3300005539 Bacteria 5450
13 Ga0070686_100093477 3300005544 Bacteria 2016
14 Ga0070693_100147276 3300005547 Bacteria 1488
15 Ga0070665_100068368 3300005548 Bacteria 3562
16 Ga0068855_100066673 3300005563 Bacteria 4197
17 Ga0068855_100194318 3300005563 Bacteria 2287
18 Ga0070664_100415676 3300005564 Bacteria 1231
19 Ga0068854_100002012 3300005578 Bacteria 12447
20 Ga0068854_100019191 3300005578 Bacteria 4603
21 Ga0068856_100018087 3300005614 Bacteria 6833
22 Ga0068856_100252561 3300005614 Bacteria 1778
23 Ga0068852_100022640 3300005616 Bacteria 5043
24 Ga0068851_10001385 3300005834 Bacteria 10585
25 Ga0068860_100317826 3300005843 Bacteria 1528
26 Ga0081455_10000197 3300005937 Bacteria 76374
27 Ga0081538_10017396 3300005981 Bacteria 5459
28 Ga0081540_1046892 3300005983 Bacteria 2177
29 Ga0081539_10058546 3300005985 Bacteria 2126
30 Ga0075365_10072693 3300006038 Bacteria 2317
31 Ga0075368_10008544 3300006042 Bacteria 3651
32 Ga0075362_10009669 3300006177 Bacteria 3738
33 Ga0075367_10001053 3300006178 Bacteria 11378
34 Ga0075367_10038612 3300006178 Bacteria 2780
35 Ga0075366_10002046 3300006195 Bacteria 10237
36 Ga0075366_10011842 3300006195 Bacteria 4934
37 Ga0075370_10022145 3300006353 Bacteria 3486
38 Ga0105240_10001549 3300009093 Bacteria 39012
39 Ga0105240_10117122 3300009093 Bacteria 3213
40 Ga0105240_10121470 3300009093 Bacteria 3145
41 Ga0105245_10128212 3300009098 Bacteria 2377
42 Ga0105243_10156011 3300009148 Bacteria 1963
43 Ga0105242_10033977 3300009176 Bacteria 4087
44 Ga0105237_10018638 3300009545 Bacteria 7176
45 Ga0105237_10023327 3300009545 Bacteria 6341
46 Ga0105237_10024675 3300009545 Bacteria 6149
47 Ga0105238_10071220 3300009551 Bacteria 3474
48 Ga0105238_10089730 3300009551 Bacteria 3061
49 Ga0105239_10010704 3300010375 Bacteria 10248
50 Ga0105239_10025523 3300010375 Bacteria 6505
51 Ga0105239_10124788 3300010375 Bacteria 2861
52 Ga0157371_10043568 3300013102 Bacteria 3196
53 Ga0157369_10489850 3300013105 Bacteria 1272
54 Ga0157372_10121613 3300013307 Bacteria 2999
55 Ga0163161_10029449 3300017792 Bacteria 3904
56 Ga0207427_105751 3300025231 Bacteria 1691
57 Ga0209233_1000290 3300025261 Bacteria 64394
58 Ga0209050_1000278 3300025298 Bacteria 109088
59 Ga0209051_1010491 3300025303 Bacteria 4669
60 Ga0207656_10001085 3300025321 Bacteria 8903
61 Ga0207705_10029328 3300025909 Bacteria 3922
62 Ga0207654_10188210 3300025911 Bacteria 1351
63 Ga0207695_10011191 3300025913 Bacteria 10884
64 Ga0207695_10013060 3300025913 Bacteria 9917
65 Ga0207695_10085034 3300025913 Bacteria 3192
66 Ga0207671_10032087 3300025914 Bacteria 3910
67 Ga0207671_10088655 3300025914 Bacteria 2328
68 Ga0207649_10000812 3300025920 Bacteria 20065
69 Ga0207649_10055724 3300025920 Bacteria 2466
70 Ga0207649_10187369 3300025920 Bacteria 1452
71 Ga0207649_10200067 3300025920 Bacteria 1411
72 Ga0207694_10073980 3300025924 Bacteria 2667
73 Ga0207694_10082667 3300025924 Bacteria 2524
74 Ga0207694_10180893 3300025924 Bacteria 1710
75 Ga0207706_10163954 3300025933 Bacteria 1953
76 Ga0207667_10012134 3300025949 Bacteria 9952
77 Ga0207667_10172347 3300025949 Bacteria 2224
78 Ga0207640_10007163 3300025981 Bacteria 6145
79 Ga0207640_10056298 3300025981 Bacteria 2580
80 Ga0207658_10059377 3300025986 Bacteria 2850
81 Ga0207639_10093080 3300026041 Bacteria 2416
82 Ga0207639_10130834 3300026041 Bacteria 2077
83 Ga0207678_10028678 3300026067 Bacteria 4858
84 Ga0207698_10009196 3300026142 Bacteria 6285
85 Ga0207698_10010746 3300026142 Bacteria 5905
86 Ga0207698_10060398 3300026142 Bacteria 2948
87 Ga0209813_10006385 3300027866 Bacteria 2910
88 Ga0268266_10226945 3300028379 Bacteria 1719
89 Ga0265318_10001635 3300028577 Bacteria 12948
90 Ga0265318_10006541 3300028577 Bacteria 5352
91 Ga0265338_10018598 3300028800 Bacteria 7425
92 Ga0265324_10043024 3300029957 Bacteria 1560
93 Ga0265330_10001277 3300031235 Bacteria 14728
94 Ga0265320_10018079 3300031240 Bacteria 3893
95 Ga0265325_10005274 3300031241 Bacteria 8013
96 Ga0265325_10015966 3300031241 Bacteria 4206
97 Ga0265325_10077559 3300031241 Bacteria 1656
98 Ga0265340_10007867 3300031247 Bacteria 5780
99 Ga0265340_10041983 3300031247 Bacteria 2246
100 Ga0265340_10055740 3300031247 Bacteria 1903
101 Ga0265339_10000227 3300031249 Bacteria 45452
102 Ga0265339_10003588 3300031249 Bacteria 10840
103 Ga0265339_10035238 3300031249 Bacteria 2809
104 Ga0265339_10084563 3300031249 Bacteria 1672
105 Ga0265339_10097514 3300031249 Bacteria 1534
106 Ga0265316_10011227 3300031344 Bacteria 8098
107 Ga0265316_10046071 3300031344 Bacteria 3457
108 Ga0307513_10011321 3300031456 Bacteria 11094
109 Ga0307509_10071931 3300031507 Bacteria 3605
110 Ga0265313_10000048 3300031595 Bacteria 112723
111 Ga0265313_10000181 3300031595 Bacteria 67263
112 Ga0265313_10009087 3300031595 Bacteria 6501
113 Ga0265313_10021964 3300031595 Bacteria 3477
114 Ga0265313_10069656 3300031595 Bacteria 1622
115 Ga0265313_10091153 3300031595 Bacteria 1368
116 Ga0307508_10000009 3300031616 Bacteria 256966
117 Ga0307508_10008300 3300031616 Bacteria 9611
118 Ga0265314_10020867 3300031711 Bacteria 5050
119 Ga0265314_10067248 3300031711 Bacteria 2414
120 Ga0265314_10077351 3300031711 Bacteria 2207
121 Ga0265342_10018097 3300031712 Bacteria 4572
122 Ga0265342_10022388 3300031712 Bacteria 4018
123 Ga0265342_10107854 3300031712 Bacteria 1579
124 Ga0307516_10057604 3300031730 Bacteria 3784
125 Ga0307406_10097949 3300031901 Bacteria 1990
126 Ga0307510_10198890 3300033180 Bacteria 1542
127 Ga0436365_0860898 3300039437 Bacteria 5517
128 Ga0436361_0406971 3300039447 Bacteria 1371
129 Ga0439465_0004790 3300041413 Bacteria 4353
130 Ga0495638_0003586 3300046460 Bacteria 12152
131 Ga0495668_0026753 3300046616 Bacteria 3272
132 Ga0496126_0229700 3300048929 Bacteria 1555
133 Ga0501031_0034072 3300049568 Bacteria 3323
134 Ga0501034_0006295 3300049571 Bacteria 12773
135 Ga0501034_0025958 3300049571 Bacteria 5968
136 Ga0501034_0037410 3300049571 Bacteria 4913
137 Ga0501034_0044950 3300049571 Bacteria 4464
138 Ga0501034_0080619 3300049571 Bacteria 3257
139 Ga0501034_0140949 3300049571 Bacteria 2390
140 Ga0501034_0147733 3300049571 Bacteria 2327
141 Ga0501034_0375759 3300049571 Bacteria 1347
142 Ga0501036_0235902 3300049572 Bacteria 1534
143 Ga0501036_0335100 3300049572 Bacteria 1264
144 Ga0501037_0028453 3300049573 Bacteria 4128
145 Ga0501037_0052425 3300049573 Bacteria 2984
146 Ga0501038_0066671 3300049574 Bacteria 3065
147 Ga0501038_0171645 3300049574 Bacteria 1755
148 Ga0501039_0045131 3300049575 Bacteria 3404
149 Ga0501039_0153904 3300049575 Bacteria 1806
150 Ga0501042_0123189 3300049578 Bacteria 1867
151 Ga0501046_0186760 3300049580 Bacteria 1548
152 Ga0501047_0063432 3300049581 Bacteria 3564
153 Ga0501047_0071878 3300049581 Bacteria 3330
154 Ga0501047_0228180 3300049581 Bacteria 1716
155 Ga0501047_0353939 3300049581 Bacteria 1305
156 Ga0501070_0013766 3300049586 Bacteria 6813
157 Ga0501070_0051441 3300049586 Bacteria 3420
158 Ga0501070_0106676 3300049586 Bacteria 2315
159 Ga0501073_0008980 3300049589 Bacteria 7383
160 Ga0501073_0026987 3300049589 Bacteria 4110
161 Ga0501074_0045184 3300049590 Bacteria 3187
162 Ga0501074_0267334 3300049590 Bacteria 1215
163 Ga0501077_0073556 3300049593 Unclassified 2165
164 Ga0501080_0170973 3300049742 Bacteria 2004
165 Ga0501035_0213997 3300049822 Bacteria 1648
166 Ga0501044_0046707 3300049823 Bacteria 4482
167 Ga0501044_0060406 3300049823 Bacteria 3881
168 Ga0501044_0066885 3300049823 Bacteria 3663
169 Ga0501044_0074607 3300049823 Bacteria 3445
170 Ga0501044_0314174 3300049823 Bacteria 1493
171 nmdc:mga03683_4018_c1 3300050489 Bacteria 4823
172 nmdc:mga03n38_39022_c1 3300050490 Bacteria 2057
173 nmdc:mga00v17_23337_c1 3300050491 Bacteria 3577
174 nmdc:mga0k408_756_c1 3300050493 Bacteria 16100
175 nmdc:mga0k408_921_c2 3300050493 Bacteria 3602
176 nmdc:mga06z11_11388_c1 3300050494 Bacteria 3834
177 nmdc:mga04h51_10406_c1 3300050495 Bacteria 2554
178 Ga0500636_0118566 3300053177 Unclassified 1487
179 Ga0501084_0330966 3300054114 Bacteria 1286
180 Ga0501082_0053577 3300060353 Bacteria 3477
181 Ga0501082_0064699 3300060353 Bacteria 3149
182 Ga0530510_0019806 3300061734 Bacteria 4782
183 2644345686 2643221662 Bacteria 5851492
184 Ga0436363_0592054
185 JGI25165J46597_1003056
186 Ga0070658_10006022
187 Ga0070683_100309515
188 Ga0070660_100059492
189 Ga0070661_100007963
190 Ga0070661_100106638
191 Ga0070661_100155205
192 Ga0070674_100011897
193 Ga0070708_100293834
194 Ga0068853_100001085
195 Ga0068853_100020869
196 Ga0070686_100093477
197 Ga0070693_100147276
198 Ga0070665_100068368
199 Ga0068855_100066673
200 Ga0068855_100194318
201 Ga0070664_100415676
202 Ga0068854_100002012
203 Ga0068854_100019191
204 Ga0068856_100018087
205 Ga0068856_100252561
206 Ga0068852_100022640
207 Ga0068851_10001385
208 Ga0068860_100317826
209 Ga0081455_10000197
210 Ga0081538_10017396
211 Ga0081540_1046892
212 Ga0081539_10058546
213 Ga0075365_10072693
214 Ga0075368_10008544
215 Ga0075362_10009669
216 Ga0075367_10001053
217 Ga0075367_10038612
218 Ga0075366_10002046
219 Ga0075366_10011842
220 Ga0075370_10022145
221 Ga0105240_10001549
222 Ga0105240_10117122
223 Ga0105240_10121470
224 Ga0105245_10128212
225 Ga0105243_10156011
226 Ga0105242_10033977
227 Ga0105237_10018638
228 Ga0105237_10023327
229 Ga0105237_10024675
230 Ga0105238_10071220
231 Ga0105238_10089730
232 Ga0105239_10010704
233 Ga0105239_10025523
234 Ga0105239_10124788
235 Ga0157371_10043568
236 Ga0157369_10489850
237 Ga0157372_10121613
238 Ga0163161_10029449
239 Ga0207427_105751
240 Ga0209233_1000290
241 Ga0209050_1000278
242 Ga0209051_1010491
243 Ga0207656_10001085
244 Ga0207705_10029328
245 Ga0207654_10188210
246 Ga0207695_10011191
247 Ga0207695_10013060
248 Ga0207695_10085034
249 Ga0207671_10032087
250 Ga0207671_10088655
251 Ga0207649_10000812
252 Ga0207649_10055724
253 Ga0207649_10187369
254 Ga0207649_10200067
255 Ga0207694_10073980
256 Ga0207694_10082667
257 Ga0207694_10180893
258 Ga0207706_10163954
259 Ga0207667_10012134
260 Ga0207667_10172347
261 Ga0207640_10007163
262 Ga0207640_10056298
263 Ga0207658_10059377
264 Ga0207639_10093080
265 Ga0207639_10130834
266 Ga0207678_10028678
267 Ga0207698_10009196
268 Ga0207698_10010746
269 Ga0207698_10060398
270 Ga0209813_10006385
271 Ga0268266_10226945
272 Ga0265318_10001635
273 Ga0265318_10006541
274 Ga0265338_10018598
275 Ga0265324_10043024
276 Ga0265330_10001277
277 Ga0265320_10018079
278 Ga0265325_10005274
279 Ga0265325_10015966
280 Ga0265325_10077559
281 Ga0265340_10007867
282 Ga0265340_10041983
283 Ga0265340_10055740
284 Ga0265339_10000227
285 Ga0265339_10003588
286 Ga0265339_10035238
287 Ga0265339_10084563
288 Ga0265339_10097514
289 Ga0265316_10011227
290 Ga0265316_10046071
291 Ga0307513_10011321
292 Ga0307509_10071931
293 Ga0265313_10000048
294 Ga0265313_10000181
295 Ga0265313_10009087
296 Ga0265313_10021964
297 Ga0265313_10069656
298 Ga0265313_10091153
299 Ga0307508_10000009
300 Ga0307508_10008300
301 Ga0265314_10020867
302 Ga0265314_10067248
303 Ga0265314_10077351
304 Ga0265342_10018097
305 Ga0265342_10022388
306 Ga0265342_10107854
307 Ga0307516_10057604
308 Ga0307406_10097949
309 Ga0307510_10198890
310 Ga0436365_0860898
311 Ga0436361_0406971
312 Ga0439465_0004790
313 Ga0495638_0003586
314 Ga0495668_0026753
315 Ga0496126_0229700
316 Ga0501031_0034072
317 Ga0501034_0006295
318 Ga0501034_0025958
319 Ga0501034_0037410
320 Ga0501034_0044950
321 Ga0501034_0080619
322 Ga0501034_0140949
323 Ga0501034_0147733
324 Ga0501034_0375759
325 Ga0501036_0235902
326 Ga0501036_0335100
327 Ga0501037_0028453
328 Ga0501037_0052425
329 Ga0501038_0066671
330 Ga0501038_0171645
331 Ga0501039_0045131
332 Ga0501039_0153904
333 Ga0501042_0123189
334 Ga0501046_0186760
335 Ga0501047_0063432
336 Ga0501047_0071878
337 Ga0501047_0228180
338 Ga0501047_0353939
339 Ga0501070_0013766
340 Ga0501070_0051441
341 Ga0501070_0106676
342 Ga0501073_0008980
343 Ga0501073_0026987
344 Ga0501074_0045184
345 Ga0501074_0267334
346 Ga0501077_0073556
347 Ga0501080_0170973
348 Ga0501035_0213997
349 Ga0501044_0046707
350 Ga0501044_0060406
351 Ga0501044_0066885
352 Ga0501044_0074607
353 Ga0501044_0314174
354 nmdc:mga03683_4018_c1
355 nmdc:mga03n38_39022_c1
356 nmdc:mga00v17_23337_c1
357 nmdc:mga0k408_756_c1
358 nmdc:mga0k408_921_c2
359 nmdc:mga06z11_11388_c1
360 nmdc:mga04h51_10406_c1
361 Ga0500636_0118566
362 Ga0501084_0330966
363 Ga0501082_0053577
364 Ga0501082_0064699
365 Ga0530510_0019806
366 2644345686

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00356

LacI

Bacterial regulatory proteins, lacI family

43

88

0.99

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

99

367

0.89

PF13407

Peripla_BP_4

Periplasmic binding protein domain

102

353

0.89

PF13377

Peripla_BP_3

Periplasmic binding protein-like domain

208

370

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
1osl-assembly1.cif.gz_B solution structure of a dimeric lactose dna-binding domain complexed to a nonspecific dna sequence 0.8843 20 66
7ff4-assembly1.cif.gz_B the crystal structure of clostridium cellulolyticum laci family transcriptional regulator ccel_1438 0.8779 78 345
6ndi-assembly1.cif.gz_B crystal structure of the sugar binding domain of laci family protein from klebsiella pneumoniae 0.8684 78 344
1osl-assembly1.cif.gz_A solution structure of a dimeric lactose dna-binding domain complexed to a nonspecific dna sequence 0.855 18 67
6ndi-assembly1.cif.gz_B crystal structure of the sugar binding domain of laci family protein from klebsiella pneumoniae 0.8533 78 344
ID Description Score Start End Superfamily
2jcgA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9631 20 67 1.10.260.40
3k4hB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9549 180 304 3.40.50.2300
2jcgA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9534 175 304 3.40.50.2300
3qk7B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9457 177 289 3.40.50.2300
3bblA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.941 177 304 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A1N7NPH7-F1-model_v4 LacI family transcriptional regulator 0.9201 83 345 GO:0000976
GO:0003700
AF-A0A0K2RC96-F1-model_v4 HTH-type transcriptional repressor PurR 0.9165 165 344 GO:0000976
GO:0003700
AF-A0A7H4P3Q3-F1-model_v4 Regulatory protein 0.9155 172 344 GO:0000976
GO:0003700
AF-D3ASF6-F1-model_v4 Transcriptional regulator LacI/GalR-like sensor domain-containing protein 0.9114 171 344 GO:0000976
GO:0003700
AF-A0A846B8A1-F1-model_v4 deleted 0.9111 172 341

Map