F281200

General Info

Members Datasets Scaffolds Average Seq Length
183 152 177 112

Family's Representative Sequence

Representative Sequence 3300039437|Ga0436365_0444758|Ga0436365_0444758_1278_1676
Length 124
Sequence LTPIRTRKNILTGGREACVPTDGDLLLAALSALANPHRLRIVAALRGKGRSYVSQLAREIGISRPLLHLHLRKLEEAGLVKSQMELSPDGKALNFFEVAPFDIAVTPESITEAARTLSQGDKHG

Samples

Sample ID Description Type Environment
1 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
2 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
3 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
4 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
5 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
18 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300012476 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610 Metagenome Rhizosphere
30 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
31 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
37 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
38 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
40 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
48 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
50 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
51 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
52 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
53 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
54 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
55 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
56 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
57 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
58 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
59 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
60 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
61 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
62 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
63 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
64 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
65 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
66 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
67 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
68 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
69 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
70 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
71 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
72 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
73 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
75 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
78 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
79 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
80 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
81 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
82 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
83 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
84 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
85 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
86 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
87 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
88 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
89 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
90 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
91 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
92 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
93 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
94 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
95 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
96 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
97 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
98 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
99 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
100 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
101 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
102 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
103 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
104 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
105 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
106 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
107 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
108 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
109 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
110 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
111 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
112 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
113 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
114 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
128 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
129 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
130 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
131 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
132 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
133 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
134 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
135 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
136 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
137 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
138 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
140 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
141 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
142 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
143 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
144 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
145 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
146 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
147 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
148 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
149 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
150 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
151 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
152 8054002106 Azospirillum lipoferum 59b Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.17
Metatranscriptomes 0.55
Isolates 3.28

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.1
Nodule 0.55
Rhizoplane 1.64
Rhizosphere 81.97
Stem 0
Stem Tuber 0
Unclassified 8.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10275318 3300003323 Bacteria 1125
2 JGI25407J50210_10015122 3300003373 Bacteria 1992
3 JGI25407J50210_10104110 3300003373 Bacteria 701
4 Ga0070683_101147451 3300005329 Bacteria 746
5 Ga0070660_100321043 3300005339 Bacteria 1272
6 Ga0070669_100508486 3300005353 Bacteria 1000
7 Ga0070663_101638748 3300005455 Bacteria 574
8 Ga0070662_100074400 3300005457 Bacteria 2513
9 Ga0070704_101101969 3300005549 Bacteria 721
10 Ga0068864_101104507 3300005618 Bacteria 789
11 Ga0068861_100027049 3300005719 Bacteria 4174
12 Ga0081455_10004778 3300005937 Bacteria 15049
13 Ga0081455_10479321 3300005937 Bacteria 842
14 Ga0081538_10002936 3300005981 Bacteria 16276
15 Ga0081538_10004519 3300005981 Bacteria 12811
16 Ga0081538_10008866 3300005981 Bacteria 8461
17 Ga0081538_10057322 3300005981 Bacteria 2271
18 Ga0081540_1081896 3300005983 Bacteria 1450
19 Ga0081539_10000409 3300005985 Bacteria 91550
20 Ga0081539_10011696 3300005985 Bacteria 6897
21 Ga0068871_100776372 3300006358 Bacteria 882
22 Ga0075428_100000772 3300006844 Bacteria 33314
23 Ga0075428_100311122 3300006844 Bacteria 1693
24 Ga0075428_101564656 3300006844 Bacteria 690
25 Ga0075431_100532136 3300006847 Bacteria 1164
26 Ga0075429_101173961 3300006880 Bacteria 670
27 Ga0105240_10529610 3300009093 Bacteria 1306
28 Ga0114129_10359696 3300009147 Bacteria 1926
29 Ga0114129_10716702 3300009147 Bacteria 1284
30 Ga0105241_11139655 3300009174 Bacteria 736
31 Ga0105249_10044353 3300009553 Bacteria 4044
32 Ga0105239_11695536 3300010375 Bacteria 731
33 Ga0157344_1021912 3300012476 Bacteria 557
34 Ga0157373_11002131 3300013100 Bacteria 623
35 Ga0163162_10553982 3300013306 Bacteria 1278
36 Ga0157372_12727945 3300013307 Bacteria 567
37 Ga0163163_10617498 3300014325 Bacteria 1147
38 Ga0182007_10133370 3300015262 Bacteria 837
39 Ga0163161_10118091 3300017792 Bacteria 1990
40 Ga0213872_10000210 3300021361 Bacteria 51803
41 Ga0213872_10023138 3300021361 Bacteria 2859
42 Ga0213876_10170891 3300021384 Bacteria 1156
43 Ga0213876_10690155 3300021384 Unclassified 543
44 Ga0209148_1024654 3300025254 Bacteria 948
45 Ga0209233_1015787 3300025261 Bacteria 2093
46 Ga0209256_1022264 3300025299 Bacteria 1923
47 Ga0207705_10921889 3300025909 Bacteria 676
48 Ga0207695_10779146 3300025913 Bacteria 836
49 Ga0207700_10403769 3300025928 Bacteria 1198
50 Ga0207706_10019443 3300025933 Bacteria 6111
51 Ga0207678_11332808 3300026067 Bacteria 635
52 Ga0207675_100023000 3300026118 Bacteria 5797
53 Ga0209813_10069784 3300027866 Unclassified 1140
54 Ga0268266_10512721 3300028379 Bacteria 1146
55 Ga0265334_10007582 3300028573 Bacteria 4652
56 Ga0307515_10046373 3300028794 Bacteria 6645
57 Ga0265338_10000006 3300028800 Bacteria 570804
58 Ga0307511_10181149 3300030521 Bacteria 1135
59 Ga0265760_10060701 3300031090 Bacteria 1148
60 Ga0265332_10025769 3300031238 Bacteria 2581
61 Ga0265328_10266956 3300031239 Bacteria 657
62 Ga0265325_10000007 3300031241 Bacteria 208874
63 Ga0265340_10030228 3300031247 Bacteria 2716
64 Ga0265339_10001389 3300031249 Bacteria 18041
65 Ga0265316_10243853 3300031344 Bacteria 1321
66 Ga0307408_100006547 3300031548 Bacteria 7717
67 Ga0307408_101800683 3300031548 Bacteria 585
68 Ga0265313_10042395 3300031595 Bacteria 2235
69 Ga0265314_10077308 3300031711 Bacteria 2208
70 Ga0265342_10054010 3300031712 Bacteria 2389
71 Ga0307405_10022832 3300031731 Bacteria 3545
72 Ga0307413_11077080 3300031824 Bacteria 693
73 Ga0307410_10186769 3300031852 Bacteria 1573
74 Ga0307406_10120693 3300031901 Bacteria 1822
75 Ga0307407_10085096 3300031903 Bacteria 1923
76 Ga0307409_100007151 3300031995 Bacteria 6649
77 Ga0307416_100014303 3300032002 Bacteria 5431
78 Ga0307416_100670855 3300032002 Bacteria 1123
79 Ga0307416_100831118 3300032002 Bacteria 1021
80 Ga0307415_100000170 3300032126 Bacteria 28895
81 Ga0373947_0219607 3300035725 Bacteria 1249
82 Ga0373925_0383308 3300037068 Bacteria 1145
83 Ga0395900_0015978 3300037418 Bacteria 7649
84 Ga0395898_0157358 3300037466 Bacteria 2173
85 Ga0395905_0117262 3300037471 Bacteria 2502
86 Ga0395905_0140065 3300037471 Bacteria 2276
87 Ga0395905_0352318 3300037471 Bacteria 1364
88 Ga0395905_0957187 3300037471 Bacteria 759
89 Ga0395901_0165115 3300038443 Bacteria 2325
90 Ga0395901_0228705 3300038443 Bacteria 1942
91 Ga0395901_0316463 3300038443 Bacteria 1615
92 Ga0436365_0444758 3300039437 Bacteria 3338
93 Ga0436365_0573671 3300039437 Unclassified 877
94 Ga0436361_0274756 3300039447 Bacteria 52927
95 Ga0436361_0362459 3300039447 Bacteria 6855
96 Ga0436361_0719314 3300039447 Bacteria 16087
97 Ga0436361_0993323 3300039447 Bacteria 4518
98 Ga0436363_0935566 3300039450 Bacteria 1617
99 Ga0451791_1791925 3300041451 Bacteria 724
100 Ga0451797_0141302 3300041453 Bacteria 576
101 Ga0451843_1543316 3300041509 Bacteria 1192
102 Ga0439450_084653 3300042008 Bacteria 792
103 Ga0439463_019647 3300042016 Bacteria 1683
104 Ga0439444_0029672 3300042437 Bacteria 1020
105 Ga0439440_0049632 3300042993 Bacteria 1045
106 Ga0495638_0119200 3300046460 Bacteria 1561
107 Ga0495584_0255362 3300046491 Bacteria 891
108 Ga0495585_0254288 3300046492 Bacteria 876
109 Ga0495607_0113529 3300046501 Bacteria 1433
110 Ga0495583_0000009 3300046506 Bacteria 372527
111 Ga0495583_0016610 3300046506 Bacteria 3948
112 Ga0495616_0001238 3300046513 Bacteria 17958
113 Ga0495644_0015417 3300046523 Bacteria 2926
114 Ga0495642_0260262 3300046528 Bacteria 759
115 Ga0495652_0585090 3300046529 Bacteria 763
116 Ga0495609_0086897 3300046538 Bacteria 1363
117 Ga0495633_0207594 3300046558 Bacteria 898
118 Ga0495656_0022035 3300046615 Bacteria 2489
119 Ga0495668_0217045 3300046616 Bacteria 1047
120 Ga0495625_0047635 3300046660 Bacteria 3090
121 Ga0495661_0107285 3300046665 Bacteria 1562
122 Ga0495670_0000990 3300046691 Bacteria 13803
123 Ga0495670_0033905 3300046691 Bacteria 2541
124 Ga0495649_0001628 3300046694 Bacteria 16707
125 Ga0495589_0328005 3300046794 Bacteria 707
126 Ga0495636_0055316 3300047318 Bacteria 1669
127 Ga0495672_0000050 3300047320 Bacteria 240336
128 Ga0495677_0069636 3300047445 Bacteria 1310
129 Ga0495626_0112957 3300048091 Bacteria 1175
130 Ga0496112_0707442 3300048915 Bacteria 935
131 Ga0496120_0270782 3300048923 Bacteria 789
132 Ga0496125_0009899 3300048928 Bacteria 9695
133 Ga0496126_0426843 3300048929 Bacteria 1070
134 Ga0501031_0002496 3300049568 Bacteria 11730
135 Ga0501032_0071891 3300049569 Bacteria 2305
136 Ga0501032_0330533 3300049569 Bacteria 983
137 Ga0501033_0014398 3300049570 Bacteria 6006
138 Ga0501037_0092600 3300049573 Bacteria 2186
139 Ga0501038_0000907 3300049574 Bacteria 26229
140 Ga0501039_0015921 3300049575 Bacteria 5758
141 Ga0501040_0006246 3300049576 Bacteria 7733
142 Ga0501041_0000203 3300049577 Bacteria 27400
143 Ga0501042_0000454 3300049578 Bacteria 21057
144 Ga0501043_0241760 3300049579 Bacteria 1392
145 Ga0501046_0001688 3300049580 Bacteria 21108
146 Ga0501047_0136477 3300049581 Bacteria 2333
147 Ga0501047_0443456 3300049581 Bacteria 1128
148 Ga0501048_0004400 3300049582 Bacteria 10727
149 Ga0501068_0076796 3300049584 Bacteria 2045
150 Ga0501071_0002173 3300049587 Bacteria 11787
151 Ga0501072_0010174 3300049588 Bacteria 7165
152 Ga0501073_0390917 3300049589 Bacteria 961
153 Ga0501073_0711188 3300049589 Bacteria 693
154 Ga0501074_0000474 3300049590 Bacteria 24326
155 Ga0501075_0001257 3300049591 Bacteria 16409
156 Ga0501076_0000446 3300049592 Bacteria 26157
157 Ga0501077_0005164 3300049593 Bacteria 7931
158 Ga0501079_0001470 3300049741 Bacteria 16669
159 Ga0501080_0098602 3300049742 Bacteria 2712
160 Ga0501081_0096476 3300049743 Bacteria 2085
161 Ga0501035_0034732 3300049822 Bacteria 4580
162 Ga0501045_0001405 3300049824 Bacteria 16073
163 nmdc:mga05p37_206910_c1 3300050507 Bacteria 2373
164 nmdc:mga06r32_483871_c1 3300050510 Bacteria 1215
165 Ga0500608_000108 3300053122 Bacteria 33810
166 Ga0500655_055454 3300053133 Bacteria 794
167 Ga0500559_0000213 3300053136 Bacteria 46604
168 Ga0500559_0002533 3300053136 Bacteria 9383
169 Ga0500559_0011290 3300053136 Bacteria 3818
170 Ga0500622_0013629 3300053156 Bacteria 4383
171 Ga0500639_011585 3300053163 Bacteria 4627
172 Ga0500636_0012758 3300053177 Bacteria 4926
173 Ga0500596_010190 3300053735 Bacteria 1456
174 Ga0501084_0000377 3300054114 Bacteria 34219
175 Ga0501084_1676140 3300054114 Bacteria 531
176 Ga0501082_0019709 3300060353 Bacteria 5815
177 Ga0530510_0008900 3300061734 Bacteria 7031

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2997451912 2997457219 82
2 3300005981 Ga0081538_10008866 Ga0081538_100088667 90
3 3300028794 Ga0307515_10046373 Ga0307515_100463735 90
4 3300037418 Ga0395900_0015978 Ga0395900_0015978_3053_3364 90
5 3300037466 Ga0395898_0157358 Ga0395898_0157358_192_503 90
6 3300037471 Ga0395905_0352318 Ga0395905_0352318_654_965 90
7 3300038443 Ga0395901_0316463 Ga0395901_0316463_795_1106 90
8 3300041451 Ga0451791_1791925 Ga0451791_1791925_217_528 90
9 3300041453 Ga0451797_0141302 Ga0451797_0141302_137_448 90
10 3300041509 Ga0451843_1543316 Ga0451843_1543316_487_798 90
11 iso_pu_bacteria 2643221545 2643750068 96
12 iso_pu_bacteria 2643221691 2644510776 96
13 iso_pu_bacteria 2868088558 2868090989 97
14 iso_pu_bacteria 8054002106 8054007135 97
15 3300053133 Ga0500655_055454 Ga0500655_055454_241_558 98
16 3300037068 Ga0373925_0383308 Ga0373925_0383308_673_984 99
17 iso_pu_bacteria 2687453743 2689992954 99
18 3300003373 JGI25407J50210_10015122 JGI25407J50210_100151225 100
19 3300003373 JGI25407J50210_10104110 JGI25407J50210_101041102 100
20 3300005329 Ga0070683_101147451 Ga0070683_1011474512 100
21 3300005339 Ga0070660_100321043 Ga0070660_1003210432 100
22 3300005353 Ga0070669_100508486 Ga0070669_1005084862 100
23 3300005455 Ga0070663_101638748 Ga0070663_1016387481 100
24 3300005457 Ga0070662_100074400 Ga0070662_1000744002 100
25 3300005549 Ga0070704_101101969 Ga0070704_1011019692 100
26 3300005618 Ga0068864_101104507 Ga0068864_1011045071 100
27 3300005719 Ga0068861_100027049 Ga0068861_1000270493 100
28 3300005937 Ga0081455_10004778 Ga0081455_100047787 100
29 3300005937 Ga0081455_10479321 Ga0081455_104793211 100
30 3300005981 Ga0081538_10002936 Ga0081538_1000293617 100
31 3300005981 Ga0081538_10004519 Ga0081538_1000451916 100
32 3300005981 Ga0081538_10057322 Ga0081538_100573222 100
33 3300005983 Ga0081540_1081896 Ga0081540_10818962 100
34 3300005985 Ga0081539_10000409 Ga0081539_1000040979 100
35 3300005985 Ga0081539_10011696 Ga0081539_100116962 100
36 3300006844 Ga0075428_100000772 Ga0075428_10000077220 100
37 3300006844 Ga0075428_100311122 Ga0075428_1003111222 100
38 3300006844 Ga0075428_101564656 Ga0075428_1015646562 100
39 3300006847 Ga0075431_100532136 Ga0075431_1005321361 100
40 3300006880 Ga0075429_101173961 Ga0075429_1011739612 100
41 3300009093 Ga0105240_10529610 Ga0105240_105296102 100
42 3300009147 Ga0114129_10359696 Ga0114129_103596963 100
43 3300009147 Ga0114129_10716702 Ga0114129_107167022 100
44 3300009174 Ga0105241_11139655 Ga0105241_111396551 100
45 3300009553 Ga0105249_10044353 Ga0105249_100443531 100
46 3300010375 Ga0105239_11695536 Ga0105239_116955361 100
47 3300012476 Ga0157344_1021912 Ga0157344_10219121 100
48 3300013100 Ga0157373_11002131 Ga0157373_110021311 100
49 3300013306 Ga0163162_10553982 Ga0163162_105539823 100
50 3300013307 Ga0157372_12727945 Ga0157372_127279452 100
51 3300014325 Ga0163163_10617498 Ga0163163_106174982 100
52 3300017792 Ga0163161_10118091 Ga0163161_101180913 100
53 3300021384 Ga0213876_10690155 Ga0213876_106901551 100
54 3300025299 Ga0209256_1022264 Ga0209256_10222642 100
55 3300025913 Ga0207695_10779146 Ga0207695_107791462 100
56 3300025933 Ga0207706_10019443 Ga0207706_100194436 100
57 3300026067 Ga0207678_11332808 Ga0207678_113328082 100
58 3300026118 Ga0207675_100023000 Ga0207675_1000230005 100
59 3300030521 Ga0307511_10181149 Ga0307511_101811492 100
60 3300031548 Ga0307408_101800683 Ga0307408_1018006832 100
61 3300031731 Ga0307405_10022832 Ga0307405_100228328 100
62 3300031824 Ga0307413_11077080 Ga0307413_110770802 100
63 3300031852 Ga0307410_10186769 Ga0307410_101867693 100
64 3300031901 Ga0307406_10120693 Ga0307406_101206934 100
65 3300031903 Ga0307407_10085096 Ga0307407_100850963 100
66 3300031995 Ga0307409_100007151 Ga0307409_1000071519 100
67 3300032002 Ga0307416_100014303 Ga0307416_1000143038 100
68 3300032002 Ga0307416_100670855 Ga0307416_1006708551 100
69 3300032002 Ga0307416_100831118 Ga0307416_1008311182 100
70 3300032126 Ga0307415_100000170 Ga0307415_10000017023 100
71 3300035725 Ga0373947_0219607 Ga0373947_0219607_118_447 100
72 3300037471 Ga0395905_0117262 Ga0395905_0117262_720_1070 100
73 3300037471 Ga0395905_0140065 Ga0395905_0140065_1036_1386 100
74 3300038443 Ga0395901_0165115 Ga0395901_0165115_783_1133 100
75 3300038443 Ga0395901_0228705 Ga0395901_0228705_1062_1412 100
76 3300039437 Ga0436365_0573671 Ga0436365_0573671_116_445 100
77 3300042008 Ga0439450_084653 Ga0439450_084653_171_521 100
78 3300042016 Ga0439463_019647 Ga0439463_019647_1151_1501 100
79 3300042437 Ga0439444_0029672 Ga0439444_0029672_430_780 100
80 3300042993 Ga0439440_0049632 Ga0439440_0049632_24_374 100
81 3300046460 Ga0495638_0119200 Ga0495638_0119200_265_579 100
82 3300046491 Ga0495584_0255362 Ga0495584_0255362_436_795 100
83 3300046492 Ga0495585_0254288 Ga0495585_0254288_27_377 100
84 3300046501 Ga0495607_0113529 Ga0495607_0113529_996_1355 100
85 3300046528 Ga0495642_0260262 Ga0495642_0260262_66_425 100
86 3300046538 Ga0495609_0086897 Ga0495609_0086897_739_1089 100
87 3300046615 Ga0495656_0022035 Ga0495656_0022035_373_732 100
88 3300046665 Ga0495661_0107285 Ga0495661_0107285_276_635 100
89 3300046691 Ga0495670_0033905 Ga0495670_0033905_402_761 100
90 3300046694 Ga0495649_0001628 Ga0495649_0001628_12243_12557 100
91 3300046794 Ga0495589_0328005 Ga0495589_0328005_15_374 100
92 3300047318 Ga0495636_0055316 Ga0495636_0055316_368_727 100
93 3300048915 Ga0496112_0707442 Ga0496112_0707442_223_576 100
94 3300049568 Ga0501031_0002496 Ga0501031_0002496_6132_6482 100
95 3300049569 Ga0501032_0071891 Ga0501032_0071891_1334_1684 100
96 3300049570 Ga0501033_0014398 Ga0501033_0014398_777_1127 100
97 3300049573 Ga0501037_0092600 Ga0501037_0092600_1757_2107 100
98 3300049574 Ga0501038_0000907 Ga0501038_0000907_9751_10101 100
99 3300049575 Ga0501039_0015921 Ga0501039_0015921_4180_4530 100
100 3300049576 Ga0501040_0006246 Ga0501040_0006246_621_971 100
101 3300049577 Ga0501041_0000203 Ga0501041_0000203_17472_17822 100
102 3300049578 Ga0501042_0000454 Ga0501042_0000454_13358_13708 100
103 3300049579 Ga0501043_0241760 Ga0501043_0241760_498_848 100
104 3300049580 Ga0501046_0001688 Ga0501046_0001688_10547_10897 100
105 3300049581 Ga0501047_0136477 Ga0501047_0136477_1124_1474 100
106 3300049582 Ga0501048_0004400 Ga0501048_0004400_5214_5564 100
107 3300049584 Ga0501068_0076796 Ga0501068_0076796_1632_1982 100
108 3300049587 Ga0501071_0002173 Ga0501071_0002173_9917_10267 100
109 3300049588 Ga0501072_0010174 Ga0501072_0010174_1574_1924 100
110 3300049589 Ga0501073_0711188 Ga0501073_0711188_289_639 100
111 3300049590 Ga0501074_0000474 Ga0501074_0000474_17510_17860 100
112 3300049591 Ga0501075_0001257 Ga0501075_0001257_12726_13076 100
113 3300049592 Ga0501076_0000446 Ga0501076_0000446_8856_9206 100
114 3300049593 Ga0501077_0005164 Ga0501077_0005164_1872_2222 100
115 3300049741 Ga0501079_0001470 Ga0501079_0001470_6728_7078 100
116 3300049742 Ga0501080_0098602 Ga0501080_0098602_1815_2165 100
117 3300049743 Ga0501081_0096476 Ga0501081_0096476_70_420 100
118 3300049822 Ga0501035_0034732 Ga0501035_0034732_483_833 100
119 3300049824 Ga0501045_0001405 Ga0501045_0001405_13423_13773 100
120 3300050507 nmdc:mga05p37_206910_c1 nmdc:mga05p37_206910_c1_1009_1368 100
121 3300050510 nmdc:mga06r32_483871_c1 nmdc:mga06r32_483871_c1_49_408 100
122 3300053122 Ga0500608_000108 Ga0500608_000108_6120_6434 100
123 3300053136 Ga0500559_0002533 Ga0500559_0002533_5662_5976 100
124 3300053156 Ga0500622_0013629 Ga0500622_0013629_3450_3764 100
125 3300054114 Ga0501084_0000377 Ga0501084_0000377_619_969 100
126 3300060353 Ga0501082_0019709 Ga0501082_0019709_174_524 100
127 3300061734 Ga0530510_0008900 Ga0530510_0008900_1258_1608 100
128 3300003323 rootH1_10275318 rootH1_102753182 101
129 3300006358 Ga0068871_100776372 Ga0068871_1007763722 101
130 3300015262 Ga0182007_10133370 Ga0182007_101333703 101
131 3300021361 Ga0213872_10000210 Ga0213872_100002105 101
132 3300021361 Ga0213872_10023138 Ga0213872_100231385 101
133 3300021384 Ga0213876_10170891 Ga0213876_101708912 101
134 3300025254 Ga0209148_1024654 Ga0209148_10246541 101
135 3300025261 Ga0209233_1015787 Ga0209233_10157874 101
136 3300025909 Ga0207705_10921889 Ga0207705_109218892 101
137 3300025928 Ga0207700_10403769 Ga0207700_104037694 101
138 3300027866 Ga0209813_10069784 Ga0209813_100697843 101
139 3300028379 Ga0268266_10512721 Ga0268266_105127212 101
140 3300028573 Ga0265334_10007582 Ga0265334_100075824 101
141 3300028800 Ga0265338_10000006 Ga0265338_10000006169 101
142 3300031090 Ga0265760_10060701 Ga0265760_100607012 101
143 3300031238 Ga0265332_10025769 Ga0265332_100257693 101
144 3300031239 Ga0265328_10266956 Ga0265328_102669561 101
145 3300031241 Ga0265325_10000007 Ga0265325_10000007169 101
146 3300031247 Ga0265340_10030228 Ga0265340_100302284 101
147 3300031249 Ga0265339_10001389 Ga0265339_1000138916 101
148 3300031344 Ga0265316_10243853 Ga0265316_102438533 101
149 3300031548 Ga0307408_100006547 Ga0307408_1000065476 101
150 3300031595 Ga0265313_10042395 Ga0265313_100423954 101
151 3300031711 Ga0265314_10077308 Ga0265314_100773082 101
152 3300031712 Ga0265342_10054010 Ga0265342_100540103 101
153 3300037471 Ga0395905_0957187 Ga0395905_0957187_72_404 101
154 3300039437 Ga0436365_0444758 Ga0436365_0444758_1278_1676 101
155 3300039447 Ga0436361_0274756 Ga0436361_0274756_33822_34154 101
156 3300039447 Ga0436361_0362459 Ga0436361_0362459_4234_4566 101
157 3300039447 Ga0436361_0719314 Ga0436361_0719314_10463_10795 101
158 3300039447 Ga0436361_0993323 Ga0436361_0993323_2470_2802 101
159 3300039450 Ga0436363_0935566 Ga0436363_0935566_951_1265 101
160 3300046506 Ga0495583_0000009 Ga0495583_0000009_306858_307190 101
161 3300046506 Ga0495583_0016610 Ga0495583_0016610_2835_3170 101
162 3300046513 Ga0495616_0001238 Ga0495616_0001238_1448_1780 101
163 3300046523 Ga0495644_0015417 Ga0495644_0015417_1368_1700 101
164 3300046529 Ga0495652_0585090 Ga0495652_0585090_271_615 101
165 3300046558 Ga0495633_0207594 Ga0495633_0207594_99_431 101
166 3300046616 Ga0495668_0217045 Ga0495668_0217045_459_794 101
167 3300046660 Ga0495625_0047635 Ga0495625_0047635_1694_2029 101
168 3300046691 Ga0495670_0000990 Ga0495670_0000990_4304_4636 101
169 3300047320 Ga0495672_0000050 Ga0495672_0000050_184701_185033 101
170 3300047445 Ga0495677_0069636 Ga0495677_0069636_931_1266 101
171 3300048091 Ga0495626_0112957 Ga0495626_0112957_722_1054 101
172 3300048923 Ga0496120_0270782 Ga0496120_0270782_188_523 101
173 3300048928 Ga0496125_0009899 Ga0496125_0009899_8781_9107 101
174 3300048929 Ga0496126_0426843 Ga0496126_0426843_524_850 101
175 3300049569 Ga0501032_0330533 Ga0501032_0330533_343_669 101
176 3300049581 Ga0501047_0443456 Ga0501047_0443456_669_995 101
177 3300049589 Ga0501073_0390917 Ga0501073_0390917_20_346 101
178 3300053136 Ga0500559_0000213 Ga0500559_0000213_19058_19402 101
179 3300053136 Ga0500559_0011290 Ga0500559_0011290_2706_3044 101
180 3300053163 Ga0500639_011585 Ga0500639_011585_1379_1723 101
181 3300053177 Ga0500636_0012758 Ga0500636_0012758_3195_3539 101
182 3300053735 Ga0500596_010190 Ga0500596_010190_407_751 101
183 3300054114 Ga0501084_1676140 Ga0501084_1676140_146_472 101

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12840

HTH_20

Helix-turn-helix domain

33

83

0.98

PF01022

HTH_5

Bacterial regulatory protein, arsR family

35

82

0.97

PF13412

HTH_24

Winged helix-turn-helix DNA-binding

35

81

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3bdd-assembly2.cif.gz_D crystal structure of a putative multiple antibiotic-resistance repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a resolution 0.9843 17 63
4lb5-assembly1.cif.gz_A-2 crystal structure of pkz zalpha in complex with ds(cg)6 (hexagonal form) 0.9567 20 81
4ggg-assembly2.cif.gz_B crystal structure of v66a/l68v czra in the zn(ii)bound state. 0.9496 6 80
2kko-assembly1.cif.gz_A solution nmr structure of the homodimeric winged helix-turn-helix dna-binding domain (fragment 1-100) mb0332 from mycobacterium bovis, a possible arsr-family transcriptional regulator. northeast structural genomics consortium target mbr242e. 0.9489 6 82
2zkz-assembly3.cif.gz_D-2 crystal structure of the transcriptional repressor pagr of bacillus anthracis 0.9472 9 56
ID Description Score Start End Superfamily
3bddD00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9843 17 63 1.10.10.10
af_Q58721_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9612 6 80 1.10.10.10
4lb5A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9567 20 81 1.10.10.10
af_Q57682_5_95_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9441 8 93 1.10.10.10
af_O53838_4_115_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9426 7 80 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A562Q4X4-F1-model_v4 Transcriptional regulator, ArsR family 0.9935 4 101 GO:0003700
AF-B2IEB3-F1-model_v4 Transcriptional regulator, ArsR family 0.9901 5 101 GO:0003700
AF-A0A7S9YD43-F1-model_v4 deleted 0.9873 1 100
AF-A0A5S5CKV8-F1-model_v4 DNA-binding transcriptional ArsR family regulator 0.987 2 101 GO:0003677
GO:0003700
AF-A0A4Y3R9Y8-F1-model_v4 HTH arsR-type domain-containing protein 0.9864 5 101 GO:0003700

Feature Viewer

pLDDT pTM Quality
94.31 0.84 High
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Predicted Structure (AlphaFold2)

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