F280942

General Info

Members Datasets Scaffolds Average Seq Length
183 137 366 128

Family's Representative Sequence

Representative Sequence 3300025899|Ga0207642_10011060|Ga0207642_100110603
Length 150
Sequence LLVDGKFCNFKVRFQNKYMAKQVIKTANAPEPIGPYSQAIFYGDILFISGQVALKPGSTEIVNKNISEETHQVMKNLQAILAEAKMDFSNVIKTTIFLSDMALFGQVNDIYSKYFDIIAGDKADFPARETVAVKGLPKNANVEISMIAAL

Samples

Sample ID Description Type Environment
1 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
31 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
32 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
38 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
55 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
56 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
57 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
58 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
60 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
61 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
62 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
63 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
64 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
89 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
90 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
91 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
92 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
93 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
94 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
95 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
96 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
97 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
98 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
99 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
100 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
101 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
102 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
103 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
104 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
105 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
106 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
107 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
108 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
109 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
110 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
111 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
112 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
113 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
114 3300041441 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_1 MetaG Metagenome Rhizoplane
115 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
116 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
117 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
118 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
119 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
120 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
121 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
122 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
123 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
124 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
125 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
126 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
127 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
128 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
129 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
130 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
131 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
132 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
133 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
134 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
135 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
136 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
137 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.81
Metatranscriptomes 2.19
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.64
Nodule 0
Rhizoplane 3.83
Rhizosphere 85.79
Stem 0
Stem Tuber 0
Unclassified 21.86

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207642_10011060 3300025899 Bacteria 3206
2 rootL2_10144189 3300003322 Bacteria 1722
3 Ga0065714_10119258 3300005288 Bacteria 1369
4 Ga0070658_10254429 3300005327 Bacteria 1490
5 Ga0070676_10643648 3300005328 Bacteria 769
6 Ga0070683_100508447 3300005329 Bacteria 1151
7 Ga0070670_100055948 3300005331 Bacteria 3386
8 Ga0070670_101178482 3300005331 Bacteria 700
9 Ga0070670_101873263 3300005331 Bacteria 552
10 Ga0068869_100011329 3300005334 Bacteria 5843
11 Ga0070666_10752824 3300005335 Unclassified 716
12 Ga0070682_100649033 3300005337 Unclassified 840
13 Ga0070691_10876531 3300005341 Bacteria 552
14 Ga0070669_100064395 3300005353 Unclassified 2700
15 Ga0070675_100223334 3300005354 Unclassified 1641
16 Ga0070675_100739775 3300005354 Bacteria 897
17 Ga0070671_100688783 3300005355 Bacteria 886
18 Ga0070667_100570915 3300005367 Bacteria 1041
19 Ga0070714_102146138 3300005435 Bacteria 544
20 Ga0070700_100601996 3300005441 Bacteria 861
21 Ga0070700_101256973 3300005441 Bacteria 620
22 Ga0070700_101558180 3300005441 Bacteria 563
23 Ga0070708_100023005 3300005445 Bacteria 5293
24 Ga0068867_100017774 3300005459 Bacteria 5048
25 Ga0068867_101738910 3300005459 Bacteria 585
26 Ga0070706_100030355 3300005467 Bacteria 4980
27 Ga0070707_100028257 3300005468 Bacteria 5336
28 Ga0070707_101260718 3300005468 Unclassified 705
29 Ga0070698_100669321 3300005471 Unclassified 979
30 Ga0070698_100694422 3300005471 Unclassified 959
31 Ga0070699_100176877 3300005518 Unclassified 1893
32 Ga0070697_100202735 3300005536 Unclassified 1686
33 Ga0068855_100085441 3300005563 Bacteria 3651
34 Ga0068855_100642869 3300005563 Bacteria 1140
35 Ga0068854_100101826 3300005578 Bacteria 2154
36 Ga0068852_101460501 3300005616 Bacteria 706
37 Ga0068859_100743753 3300005617 Bacteria 1070
38 Ga0068859_101042840 3300005617 Bacteria 899
39 Ga0068859_101624357 3300005617 Unclassified 714
40 Ga0068864_100704390 3300005618 Bacteria 987
41 Ga0068866_10027309 3300005718 Bacteria 2705
42 Ga0068851_10969224 3300005834 Bacteria 535
43 Ga0068870_11377001 3300005840 Bacteria 516
44 Ga0068863_100071807 3300005841 Bacteria 3275
45 Ga0068863_100151271 3300005841 Unclassified 2221
46 Ga0068863_100514312 3300005841 Bacteria 1180
47 Ga0068863_100550515 3300005841 Bacteria 1139
48 Ga0068858_101522018 3300005842 Bacteria 660
49 Ga0068860_100006979 3300005843 Bacteria 11315
50 Ga0068860_100200422 3300005843 Bacteria 1934
51 Ga0068860_100634825 3300005843 Bacteria 1075
52 Ga0068860_101969487 3300005843 Bacteria 606
53 Ga0068862_100011150 3300005844 Bacteria 7421
54 Ga0070715_10226717 3300006163 Unclassified 964
55 Ga0070712_100224728 3300006175 Bacteria 1488
56 Ga0075431_100156483 3300006847 Bacteria 2344
57 Ga0075434_100140716 3300006871 Bacteria 2432
58 Ga0075429_100375738 3300006880 Bacteria 1244
59 Ga0097620_100743694 3300006931 Bacteria 1070
60 Ga0097620_101042948 3300006931 Bacteria 899
61 Ga0097620_101624635 3300006931 Unclassified 714
62 Ga0105237_11143727 3300009545 Unclassified 785
63 Ga0105238_10262863 3300009551 Bacteria 1705
64 Ga0105249_10898280 3300009553 Bacteria 953
65 Ga0157373_10578431 3300013100 Bacteria 816
66 Ga0157373_11218964 3300013100 Unclassified 568
67 Ga0157370_10468226 3300013104 Unclassified 1158
68 Ga0157369_10699153 3300013105 Bacteria 1044
69 Ga0157374_10147434 3300013296 Bacteria 2286
70 Ga0157374_10767747 3300013296 Bacteria 979
71 Ga0157378_11268372 3300013297 Bacteria 777
72 Ga0163162_10564948 3300013306 Bacteria 1265
73 Ga0157375_13737578 3300013308 Bacteria 506
74 Ga0163163_10504536 3300014325 Bacteria 1272
75 Ga0163163_12207299 3300014325 Bacteria 610
76 Ga0163163_12310103 3300014325 Unclassified 597
77 Ga0157377_10488344 3300014745 Bacteria 858
78 Ga0157379_10940104 3300014968 Bacteria 822
79 Ga0197907_11498933 3300020069 Bacteria 1078
80 Ga0206352_10851452 3300020078 Unclassified 720
81 Ga0206350_11068907 3300020080 Bacteria 1321
82 Ga0213873_10000310 3300021358 Bacteria 8319
83 Ga0213874_10002046 3300021377 Bacteria 4265
84 Ga0213876_10020749 3300021384 Bacteria 3474
85 Ga0213871_10121561 3300021441 Unclassified 779
86 Ga0224712_10413698 3300022467 Bacteria 644
87 Ga0207680_10580171 3300025903 Unclassified 801
88 Ga0207705_10129339 3300025909 Bacteria 1878
89 Ga0207684_10877278 3300025910 Unclassified 755
90 Ga0207695_10684319 3300025913 Unclassified 906
91 Ga0207646_10146311 3300025922 Bacteria 2129
92 Ga0207646_10874352 3300025922 Unclassified 798
93 Ga0207681_10079174 3300025923 Bacteria 2315
94 Ga0207681_10441980 3300025923 Bacteria 1057
95 Ga0207694_10586573 3300025924 Bacteria 937
96 Ga0207650_10418994 3300025925 Bacteria 1111
97 Ga0207650_10591352 3300025925 Bacteria 933
98 Ga0207650_11603330 3300025925 Bacteria 552
99 Ga0207659_10572639 3300025926 Unclassified 961
100 Ga0207704_10066014 3300025938 Bacteria 2269
101 Ga0207689_10015923 3300025942 Bacteria 6366
102 Ga0207667_10440487 3300025949 Bacteria 1325
103 Ga0207712_11199533 3300025961 Bacteria 677
104 Ga0207668_11174419 3300025972 Unclassified 689
105 Ga0207640_10071301 3300025981 Bacteria 2340
106 Ga0207658_10744566 3300025986 Bacteria 887
107 Ga0207677_11981082 3300026023 Unclassified 541
108 Ga0207703_11152987 3300026035 Bacteria 745
109 Ga0207641_10274538 3300026088 Bacteria 1583
110 Ga0207641_10701005 3300026088 Bacteria 997
111 Ga0207641_11809992 3300026088 Bacteria 612
112 Ga0207648_10191249 3300026089 Bacteria 1814
113 Ga0207648_11571246 3300026089 Bacteria 618
114 Ga0207648_11678371 3300026089 Bacteria 597
115 Ga0207674_10469527 3300026116 Bacteria 1216
116 Ga0207674_10743752 3300026116 Bacteria 946
117 Ga0209974_10132080 3300027876 Unclassified 891
118 Ga0268265_10302252 3300028380 Bacteria 1441
119 Ga0268264_10038507 3300028381 Unclassified 3947
120 Ga0268264_10041952 3300028381 Bacteria 3786
121 Ga0265319_1147720 3300028563 Bacteria 728
122 Ga0265318_10006773 3300028577 Bacteria 5244
123 Ga0307515_10267306 3300028794 Bacteria 1437
124 Ga0265330_10125061 3300031235 Bacteria 1095
125 Ga0265332_10173734 3300031238 Bacteria 899
126 Ga0265332_10313386 3300031238 Bacteria 648
127 Ga0265328_10115638 3300031239 Bacteria 998
128 Ga0265325_10000760 3300031241 Bacteria 23395
129 Ga0265329_10044768 3300031242 Bacteria 1415
130 Ga0265340_10005055 3300031247 Bacteria 7336
131 Ga0265331_10064659 3300031250 Bacteria 1721
132 Ga0265316_10000154 3300031344 Bacteria 76008
133 Ga0307509_10008986 3300031507 Bacteria 12596
134 Ga0265313_10000287 3300031595 Bacteria 55386
135 Ga0265342_10142491 3300031712 Bacteria 1336
136 Ga0265342_10151993 3300031712 Bacteria 1285
137 Ga0307413_11988208 3300031824 Unclassified 524
138 Ga0307413_12039044 3300031824 Unclassified 518
139 Ga0316574_0406643 3300035398 Bacteria 857
140 Ga0373931_0399186 3300035691 Unclassified 870
141 Ga0373927_0030558 3300035695 Bacteria 3514
142 Ga0316582_0539133 3300036647 Bacteria 804
143 Ga0395898_0587213 3300037466 Bacteria 1056
144 Ga0436364_0941977 3300037853 Bacteria 11728
145 Ga0400484_18107 3300038725 Bacteria 1010
146 Ga0436365_0164115 3300039437 Bacteria 876
147 Ga0436365_0898321 3300039437 Bacteria 5046
148 Ga0436365_1576680 3300039437 Bacteria 4807
149 Ga0436365_1925682 3300039437 Bacteria 65070
150 Ga0436360_0971938 3300039438 Bacteria 1267
151 Ga0436360_1087836 3300039438 Unclassified 1268
152 Ga0436363_0249004 3300039450 Unclassified 510
153 Ga0436363_0764295 3300039450 Bacteria 30631
154 Ga0436362_0629561 3300039453 Bacteria 13427
155 Ga0436362_0785077 3300039453 Bacteria 2330
156 Ga0436362_0856193 3300039453 Bacteria 1520
157 Ga0451787_530803 3300041441 Bacteria 571
158 Ga0439451_094548 3300042009 Bacteria 603
159 Ga0439435_0071253 3300042436 Bacteria 1029
160 Ga0451577_0669081 3300042876 Unclassified 941
161 Ga0451576_0007842 3300045051 Bacteria 12651
162 Ga0451576_0223322 3300045051 Bacteria 1967
163 Ga0495632_0156644 3300046519 Bacteria 1051
164 Ga0495598_0041716 3300046537 Unclassified 1344
165 Ga0495672_0036568 3300047320 Unclassified 3014
166 Ga0496100_0293939 3300048903 Bacteria 1214
167 Ga0496102_0267800 3300048905 Bacteria 1611
168 Ga0496104_0436369 3300048907 Bacteria 1221
169 Ga0496107_0224494 3300048910 Bacteria 1397
170 Ga0496114_0037136 3300048917 Bacteria 4029
171 Ga0496115_1026197 3300048918 Unclassified 629
172 Ga0496125_0026900 3300048928 Bacteria 5225
173 Ga0496125_0076003 3300048928 Bacteria 2595
174 Ga0496126_0081620 3300048929 Bacteria 2858
175 Ga0501034_0277513 3300049571 Bacteria 1616
176 nmdc:mga0k408_332380_c1 3300050493 Unclassified 906
177 nmdc:mga09592_19360_c1 3300050508 Bacteria 5589
178 nmdc:mga06r32_72141_c1 3300050510 Bacteria 3343
179 nmdc:mga08y16_936658_c1 3300050511 Bacteria 850
180 nmdc:mga0n895_140026_c1 3300050512 Bacteria 2447
181 nmdc:mga0n895_1628753_c1 3300050512 Unclassified 609
182 Ga0500655_015676 3300053133 Bacteria 1392
183 Ga0500568_0113230 3300053139 Unclassified 1013
184 Ga0207642_10011060
185 rootL2_10144189
186 Ga0065714_10119258
187 Ga0070658_10254429
188 Ga0070676_10643648
189 Ga0070683_100508447
190 Ga0070670_100055948
191 Ga0070670_101178482
192 Ga0070670_101873263
193 Ga0068869_100011329
194 Ga0070666_10752824
195 Ga0070682_100649033
196 Ga0070691_10876531
197 Ga0070669_100064395
198 Ga0070675_100223334
199 Ga0070675_100739775
200 Ga0070671_100688783
201 Ga0070667_100570915
202 Ga0070714_102146138
203 Ga0070700_100601996
204 Ga0070700_101256973
205 Ga0070700_101558180
206 Ga0070708_100023005
207 Ga0068867_100017774
208 Ga0068867_101738910
209 Ga0070706_100030355
210 Ga0070707_100028257
211 Ga0070707_101260718
212 Ga0070698_100669321
213 Ga0070698_100694422
214 Ga0070699_100176877
215 Ga0070697_100202735
216 Ga0068855_100085441
217 Ga0068855_100642869
218 Ga0068854_100101826
219 Ga0068852_101460501
220 Ga0068859_100743753
221 Ga0068859_101042840
222 Ga0068859_101624357
223 Ga0068864_100704390
224 Ga0068866_10027309
225 Ga0068851_10969224
226 Ga0068870_11377001
227 Ga0068863_100071807
228 Ga0068863_100151271
229 Ga0068863_100514312
230 Ga0068863_100550515
231 Ga0068858_101522018
232 Ga0068860_100006979
233 Ga0068860_100200422
234 Ga0068860_100634825
235 Ga0068860_101969487
236 Ga0068862_100011150
237 Ga0070715_10226717
238 Ga0070712_100224728
239 Ga0075431_100156483
240 Ga0075434_100140716
241 Ga0075429_100375738
242 Ga0097620_100743694
243 Ga0097620_101042948
244 Ga0097620_101624635
245 Ga0105237_11143727
246 Ga0105238_10262863
247 Ga0105249_10898280
248 Ga0157373_10578431
249 Ga0157373_11218964
250 Ga0157370_10468226
251 Ga0157369_10699153
252 Ga0157374_10147434
253 Ga0157374_10767747
254 Ga0157378_11268372
255 Ga0163162_10564948
256 Ga0157375_13737578
257 Ga0163163_10504536
258 Ga0163163_12207299
259 Ga0163163_12310103
260 Ga0157377_10488344
261 Ga0157379_10940104
262 Ga0197907_11498933
263 Ga0206352_10851452
264 Ga0206350_11068907
265 Ga0213873_10000310
266 Ga0213874_10002046
267 Ga0213876_10020749
268 Ga0213871_10121561
269 Ga0224712_10413698
270 Ga0207680_10580171
271 Ga0207705_10129339
272 Ga0207684_10877278
273 Ga0207695_10684319
274 Ga0207646_10146311
275 Ga0207646_10874352
276 Ga0207681_10079174
277 Ga0207681_10441980
278 Ga0207694_10586573
279 Ga0207650_10418994
280 Ga0207650_10591352
281 Ga0207650_11603330
282 Ga0207659_10572639
283 Ga0207704_10066014
284 Ga0207689_10015923
285 Ga0207667_10440487
286 Ga0207712_11199533
287 Ga0207668_11174419
288 Ga0207640_10071301
289 Ga0207658_10744566
290 Ga0207677_11981082
291 Ga0207703_11152987
292 Ga0207641_10274538
293 Ga0207641_10701005
294 Ga0207641_11809992
295 Ga0207648_10191249
296 Ga0207648_11571246
297 Ga0207648_11678371
298 Ga0207674_10469527
299 Ga0207674_10743752
300 Ga0209974_10132080
301 Ga0268265_10302252
302 Ga0268264_10038507
303 Ga0268264_10041952
304 Ga0265319_1147720
305 Ga0265318_10006773
306 Ga0307515_10267306
307 Ga0265330_10125061
308 Ga0265332_10173734
309 Ga0265332_10313386
310 Ga0265328_10115638
311 Ga0265325_10000760
312 Ga0265329_10044768
313 Ga0265340_10005055
314 Ga0265331_10064659
315 Ga0265316_10000154
316 Ga0307509_10008986
317 Ga0265313_10000287
318 Ga0265342_10142491
319 Ga0265342_10151993
320 Ga0307413_11988208
321 Ga0307413_12039044
322 Ga0316574_0406643
323 Ga0373931_0399186
324 Ga0373927_0030558
325 Ga0316582_0539133
326 Ga0395898_0587213
327 Ga0436364_0941977
328 Ga0400484_18107
329 Ga0436365_0164115
330 Ga0436365_0898321
331 Ga0436365_1576680
332 Ga0436365_1925682
333 Ga0436360_0971938
334 Ga0436360_1087836
335 Ga0436363_0249004
336 Ga0436363_0764295
337 Ga0436362_0629561
338 Ga0436362_0785077
339 Ga0436362_0856193
340 Ga0451787_530803
341 Ga0439451_094548
342 Ga0439435_0071253
343 Ga0451577_0669081
344 Ga0451576_0007842
345 Ga0451576_0223322
346 Ga0495632_0156644
347 Ga0495598_0041716
348 Ga0495672_0036568
349 Ga0496100_0293939
350 Ga0496102_0267800
351 Ga0496104_0436369
352 Ga0496107_0224494
353 Ga0496114_0037136
354 Ga0496115_1026197
355 Ga0496125_0026900
356 Ga0496125_0076003
357 Ga0496126_0081620
358 Ga0501034_0277513
359 nmdc:mga0k408_332380_c1
360 nmdc:mga09592_19360_c1
361 nmdc:mga06r32_72141_c1
362 nmdc:mga08y16_936658_c1
363 nmdc:mga0n895_140026_c1
364 nmdc:mga0n895_1628753_c1
365 Ga0500655_015676
366 Ga0500568_0113230

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01042

Ribonuc_L-PSP

Endoribonuclease L-PSP

26

150

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2dyy-assembly3.cif.gz_G crystal structure of putative translation initiation inhibitor ph0854 from pyrococcus horikoshii 0.9862 6 128
5y6u-assembly1.cif.gz_C crystal structure of wild-type yabj protein from bacillus subtilis (natto). 0.986 6 127
1xrg-assembly1.cif.gz_C conserved hypothetical protein from clostridium thermocellum cth-2968 0.9856 5 128
2b33-assembly1.cif.gz_A crystal structure of a putative endoribonuclease (tm0215) from thermotoga maritima msb8 at 2.30 a resolution 0.9848 6 128
1x25-assembly2.cif.gz_B crystal structure of a member of yjgf family from sulfolobus tokodaii (st0811) 0.984 5 127
ID Description Score Start End Superfamily
2dyyG00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9862 6 128 3.30.1330.40
1jd1F00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9796 4 127 3.30.1330.40
af_Q86KR5_2_129_3.30.1330.40 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9767 4 127 3.30.1330.40
3k0tB00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9766 6 128 3.30.1330.40
5hp8A00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9762 21 128 3.30.1330.40
ID Description Score Start End GO Terms
AF-A0A1G8T8E2-F1-model_v4 2-iminobutanoate/2-iminopropanoate deaminase 0.9946 4 128 GO:0005829
GO:0019239
AF-A0A3M1RR71-F1-model_v4 RidA family protein 0.9942 4 127 GO:0005829
GO:0019239
AF-A0A651E8J3-F1-model_v4 RidA family protein 0.9912 5 128 GO:0005829
GO:0019239
AF-A0A399IHZ9-F1-model_v4 Reactive intermediate/imine deaminase 0.9911 6 128 GO:0005829
GO:0019239
AF-A0A1V4S3N8-F1-model_v4 Reactive intermediate/imine deaminase 0.991 4 128 GO:0005829
GO:0019239

Map