F280589

General Info

Members Datasets Scaffolds Average Seq Length
183 148 366 697

Family's Representative Sequence

Representative Sequence 3300005981|Ga0081538_10002070|Ga0081538_100020706
Length 809
Sequence VLSELKTKGGDVPAGTPPSSKLARDPAAPKSSPRRKWSETTRIANESVSLVTPFRQNPVELYATGFPISGPLASAQPRIVGVGPYGVGVPAASTKSRVSPEALLDDLDPEQHQVAIALTGPVAVIAGAGTGKTRAITYRIAYGVATGTYNPTSVLAVTFTTRAAGELRARLQQLGAYGVQARTFHSAALRQAQYFWPRVYGGELPQVLDNRMGLIAEAAGRLRVRVDTPGLRDLIAEISWAKVSNVSAEDYPRLAGQHNRQLASYDPETVSRVFAAYEKAKRDRGRIDFEDILLCAAALMSEHPEIAETIRRTYRHLVVDEYQDVSPLQEALLNLWRGDRAELCVVGDPAQTIHSFAGAQAGYLTGFGQRFPNATVIRLIRDYRSTPQVVRCANSIMAAPNIDASRGGFRPVTLQAQQPAGPEVEFVESPDESAEAAGVAGWLAQQAAAGVDFRDMAVLFRINAQSPPIEQALADRNIPYLVRGGERFYERPEVRQTLLTLRTKARAMTSAEQGNAVEQMKEVLVALGWTEQPPEGGGALRERWESLAALLSVAEDLQAEADSAATSVDGSSQPLSLEAVSAELDRRAEAQHVPAAQGVTVSTLHSAKGLEWDAVALLGIHEGSLPFVLATSPEQISEEQRLLYVGVTRARRLLRVSWSRTRNGNGHARTPSRFLQPVLPDSFVAPANRQRSARRNRHSALSLHCRSCGRSLTEAAERKIGRHLGCPATYDEHTMAMLREWRRQEAADQKLPAYCVFTDATLIAIAEARPSSMADLIKVQGLGRTKADKYGEHVLAIIASESDRTRASS

Samples

Sample ID Description Type Environment
1 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
28 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
31 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
32 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
40 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
41 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
55 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
78 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
81 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
82 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
83 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
84 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
85 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
86 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
87 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
88 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
89 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
92 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
93 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
94 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
95 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
96 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
97 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
98 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
99 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
100 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
101 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
102 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
103 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
104 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
105 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
122 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
123 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
124 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
125 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
126 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
127 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
131 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
132 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
135 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
136 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
137 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
138 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
139 2643221696 Nocardioides sp. Root140 Isolate Unclassified
140 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
141 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
142 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
143 2883821847 Microlunatus elymi KUDC0627 Isolate Rhizosphere
144 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
145 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
146 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
147 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
148 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.54
Metatranscriptomes 0
Isolates 5.46

Biome Distribution

Category Percentage (%)
Aerial Root 1.09
Bulb 0
Endosphere 2.19
Nodule 0
Rhizoplane 2.19
Rhizosphere 90.16
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081538_10002070 3300005981 Bacteria 20008
2 JGI25406J46586_10020084 3300003203 Bacteria 2710
3 Ga0070658_10005962 3300005327 Bacteria 9883
4 Ga0070658_10077092 3300005327 Bacteria 2734
5 Ga0070683_100028493 3300005329 Bacteria 5048
6 Ga0070682_100013449 3300005337 Bacteria 4709
7 Ga0070692_10002817 3300005345 Bacteria 6865
8 Ga0070668_100025940 3300005347 Bacteria 4444
9 Ga0070674_100024440 3300005356 Bacteria 3921
10 Ga0070659_100000246 3300005366 Bacteria 42640
11 Ga0070667_100001130 3300005367 Bacteria 24307
12 Ga0070714_100000008 3300005435 Bacteria 278734
13 Ga0070701_10004666 3300005438 Bacteria 5579
14 Ga0070681_10059904 3300005458 Bacteria 3786
15 Ga0068867_100005615 3300005459 Bacteria 8887
16 Ga0070698_100000919 3300005471 Bacteria 32170
17 Ga0070679_100005550 3300005530 Bacteria 11688
18 Ga0070684_100091213 3300005535 Bacteria 2710
19 Ga0068853_100032975 3300005539 Bacteria 4391
20 Ga0070696_100012850 3300005546 Bacteria 5620
21 Ga0068855_100033760 3300005563 Bacteria 6104
22 Ga0068856_100056120 3300005614 Bacteria 3886
23 Ga0070702_100003365 3300005615 Bacteria 7141
24 Ga0068852_100019830 3300005616 Bacteria 5333
25 Ga0068870_10006608 3300005840 Bacteria 5122
26 Ga0068863_100027873 3300005841 Bacteria 5391
27 Ga0068860_100000282 3300005843 Bacteria 72471
28 Ga0068862_100040216 3300005844 Bacteria 3975
29 Ga0068862_100065017 3300005844 Bacteria 3141
30 Ga0081455_10001250 3300005937 Bacteria 31777
31 Ga0081455_10002269 3300005937 Bacteria 22923
32 Ga0081455_10003843 3300005937 Bacteria 17127
33 Ga0081455_10053646 3300005937 Bacteria 3443
34 Ga0081455_10089603 3300005937 Bacteria 2496
35 Ga0081539_10000111 3300005985 Bacteria 190245
36 Ga0075365_10039738 3300006038 Bacteria 3065
37 Ga0075364_10042111 3300006051 Bacteria 2967
38 Ga0075432_10000195 3300006058 Bacteria 15777
39 Ga0075370_10020956 3300006353 Bacteria 3579
40 Ga0075428_100002502 3300006844 Bacteria 19956
41 Ga0075428_100029513 3300006844 Bacteria 6067
42 Ga0075428_100083039 3300006844 Bacteria 3495
43 Ga0075431_100004642 3300006847 Bacteria 13489
44 Ga0075433_10006684 3300006852 Bacteria 9134
45 Ga0075433_10053103 3300006852 Bacteria 3532
46 Ga0075434_100001648 3300006871 Bacteria 19017
47 Ga0075429_100011137 3300006880 Bacteria 7785
48 Ga0068865_100011056 3300006881 Bacteria 5636
49 Ga0068865_100011461 3300006881 Bacteria 5553
50 Ga0075436_100000502 3300006914 Bacteria 25296
51 Ga0075436_100053909 3300006914 Bacteria 2776
52 Ga0075435_100000521 3300007076 Bacteria 23553
53 Ga0111539_10000276 3300009094 Bacteria 61369
54 Ga0114129_10004125 3300009147 Bacteria 20529
55 Ga0105243_10003758 3300009148 Bacteria 12169
56 Ga0105243_10012182 3300009148 Bacteria 6502
57 Ga0105243_10036300 3300009148 Bacteria 3825
58 Ga0105242_10073485 3300009176 Bacteria 2843
59 Ga0105248_10026920 3300009177 Bacteria 6394
60 Ga0105249_10057009 3300009553 Bacteria 3578
61 Ga0105249_10059371 3300009553 Bacteria 3508
62 Ga0105246_10023092 3300011119 Bacteria 4021
63 Ga0157369_10003534 3300013105 Bacteria 18579
64 Ga0157372_10018178 3300013307 Bacteria 7558
65 Ga0157380_10004182 3300014326 Bacteria 9976
66 Ga0157377_10007185 3300014745 Bacteria 5361
67 Ga0157379_10020039 3300014968 Bacteria 5911
68 Ga0213875_10004687 3300021388 Bacteria 7449
69 Ga0207680_10005332 3300025903 Bacteria 6137
70 Ga0207705_10005052 3300025909 Bacteria 9891
71 Ga0207654_10057900 3300025911 Bacteria 2254
72 Ga0207707_10080528 3300025912 Bacteria 2844
73 Ga0207695_10021395 3300025913 Bacteria 7378
74 Ga0207660_10027779 3300025917 Bacteria 3865
75 Ga0207652_10040989 3300025921 Bacteria 3935
76 Ga0207652_10051370 3300025921 Bacteria 3534
77 Ga0207687_10039757 3300025927 Bacteria 3221
78 Ga0207687_10048185 3300025927 Bacteria 2957
79 Ga0207664_10000002 3300025929 Bacteria 657053
80 Ga0207690_10000065 3300025932 Bacteria 94536
81 Ga0207690_10047826 3300025932 Bacteria 2841
82 Ga0207706_10004971 3300025933 Bacteria 12427
83 Ga0207709_10065599 3300025935 Bacteria 2284
84 Ga0207691_10001843 3300025940 Bacteria 20711
85 Ga0207711_10118562 3300025941 Bacteria 2361
86 Ga0207667_10020701 3300025949 Bacteria 7311
87 Ga0207667_10037617 3300025949 Bacteria 5172
88 Ga0207712_10006751 3300025961 Bacteria 7238
89 Ga0207712_10062365 3300025961 Bacteria 2650
90 Ga0207668_10041416 3300025972 Bacteria 3113
91 Ga0207658_10005063 3300025986 Bacteria 9071
92 Ga0207677_10001404 3300026023 Bacteria 12832
93 Ga0207641_10030201 3300026088 Bacteria 4487
94 Ga0207648_10001531 3300026089 Bacteria 25458
95 Ga0207675_100002452 3300026118 Bacteria 18368
96 Ga0207675_100002597 3300026118 Bacteria 17876
97 Ga0207675_100020588 3300026118 Bacteria 6148
98 Ga0207428_10000293 3300027907 Bacteria 66861
99 Ga0268265_10051658 3300028380 Bacteria 3104
100 Ga0268264_10000390 3300028381 Bacteria 63138
101 Ga0307413_10018663 3300031824 Bacteria 3645
102 Ga0307413_10020233 3300031824 Bacteria 3535
103 Ga0307410_10006080 3300031852 Bacteria 6473
104 Ga0307410_10043871 3300031852 Bacteria 2966
105 Ga0307410_10064288 3300031852 Bacteria 2521
106 Ga0307406_10000033 3300031901 Bacteria 83943
107 Ga0307407_10025868 3300031903 Bacteria 3100
108 Ga0307407_10027653 3300031903 Bacteria 3021
109 Ga0307409_100000041 3300031995 Bacteria 44759
110 Ga0307414_10003385 3300032004 Bacteria 8517
111 Ga0307414_10044872 3300032004 Bacteria 3023
112 Ga0307414_10064447 3300032004 Bacteria 2609
113 Ga0307415_100057797 3300032126 Bacteria 2667
114 Ga0373956_0000308 3300035119 Bacteria 19700
115 Ga0395900_0009373 3300037418 Bacteria 10038
116 Ga0436364_1004275 3300037853 Bacteria 21508
117 Ga0436365_0075664 3300039437 Bacteria 6377
118 Ga0439463_006402 3300042016 Bacteria 2922
119 Ga0439463_010257 3300042016 Bacteria 2303
120 Ga0439435_0000872 3300042436 Bacteria 5178
121 Ga0466969_0001475 3300044656 Bacteria 12643
122 Ga0466972_0033676 3300044658 Bacteria 2513
123 Ga0466966_0014815 3300044684 Bacteria 5159
124 Ga0466961_0002528 3300044693 Bacteria 11341
125 Ga0466970_0038962 3300044765 Bacteria 2522
126 Ga0466959_0011989 3300045049 Bacteria 6251
127 Ga0466958_0011413 3300045836 Bacteria 5004
128 Ga0466967_0092696 3300045976 Bacteria 2747
129 Ga0495616_0027163 3300046513 Bacteria 3040
130 Ga0495620_0014850 3300046515 Bacteria 3948
131 Ga0496102_0028565 3300048905 Bacteria 4983
132 Ga0496108_0007125 3300048911 Bacteria 9060
133 Ga0496109_0010644 3300048912 Bacteria 7866
134 Ga0496109_0052328 3300048912 Bacteria 3721
135 Ga0496126_0000026 3300048929 Bacteria 422310
136 Ga0501031_0000318 3300049568 Bacteria 27559
137 Ga0501032_0001592 3300049569 Bacteria 18084
138 Ga0501033_0001667 3300049570 Bacteria 19434
139 Ga0501034_0002945 3300049571 Bacteria 19727
140 Ga0501036_0003231 3300049572 Bacteria 12995
141 Ga0501036_0018753 3300049572 Bacteria 5803
142 Ga0501037_0006059 3300049573 Bacteria 8827
143 Ga0501038_0001624 3300049574 Bacteria 20911
144 Ga0501038_0025104 3300049574 Bacteria 5313
145 Ga0501039_0000401 3300049575 Bacteria 31087
146 Ga0501039_0004335 3300049575 Bacteria 10698
147 Ga0501040_0042248 3300049576 Bacteria 3105
148 Ga0501041_0020804 3300049577 Bacteria 3926
149 Ga0501042_0024002 3300049578 Bacteria 4273
150 Ga0501043_0016051 3300049579 Bacteria 5872
151 Ga0501046_0003565 3300049580 Bacteria 14268
152 Ga0501047_0004264 3300049581 Bacteria 13459
153 Ga0501048_0000197 3300049582 Bacteria 39165
154 Ga0501048_0034968 3300049582 Bacteria 3620
155 Ga0501070_0002911 3300049586 Bacteria 14903
156 Ga0501072_0049406 3300049588 Bacteria 3311
157 Ga0501074_0009686 3300049590 Bacteria 6996
158 Ga0501077_0006031 3300049593 Bacteria 7400
159 Ga0501079_0059302 3300049741 Bacteria 2952
160 Ga0501080_0003486 3300049742 Bacteria 13861
161 Ga0501035_0002803 3300049822 Bacteria 16851
162 Ga0501035_0066960 3300049822 Bacteria 3187
163 Ga0501044_0075477 3300049823 Bacteria 3422
164 nmdc:mga00v17_8918_c1 3300050491 Bacteria 5410
165 nmdc:mga05p37_113227_c1 3300050507 Bacteria 3336
166 nmdc:mga09592_9914_c1 3300050508 Bacteria 7749
167 nmdc:mga08y16_16659_c1 3300050511 Bacteria 7731
168 nmdc:mga0n895_13972_c1 3300050512 Bacteria 7273
169 nmdc:mga08x19_1048_c1 3300050514 Bacteria 17283
170 nmdc:mga0a205_36070_c1 3300050515 Bacteria 4751
171 Ga0501084_0002840 3300054114 Bacteria 13989
172 Ga0501082_0010556 3300060353 Bacteria 7950
173 Ga0501082_0017114 3300060353 Bacteria 6246
174 2644535447 2643221696 Bacteria 5431823
175 2784471615 2784132109 Bacteria 3141763
176 2863068858 2863067949 Bacteria 8541735
177 2866553120 2866552031 Bacteria 5824618
178 2883824235 2883821847 Bacteria 5121194
179 2984576937 2984576629 Bacteria 4248407
180 2990258684 2990256926 Bacteria 4252839
181 3001890743 3001889506 Bacteria 2975194
182 8053946453 8053945823 Bacteria 8962862
183 8056215429 8056207758 Bacteria 8639239
184 Ga0081538_10002070
185 JGI25406J46586_10020084
186 Ga0070658_10005962
187 Ga0070658_10077092
188 Ga0070683_100028493
189 Ga0070682_100013449
190 Ga0070692_10002817
191 Ga0070668_100025940
192 Ga0070674_100024440
193 Ga0070659_100000246
194 Ga0070667_100001130
195 Ga0070714_100000008
196 Ga0070701_10004666
197 Ga0070681_10059904
198 Ga0068867_100005615
199 Ga0070698_100000919
200 Ga0070679_100005550
201 Ga0070684_100091213
202 Ga0068853_100032975
203 Ga0070696_100012850
204 Ga0068855_100033760
205 Ga0068856_100056120
206 Ga0070702_100003365
207 Ga0068852_100019830
208 Ga0068870_10006608
209 Ga0068863_100027873
210 Ga0068860_100000282
211 Ga0068862_100040216
212 Ga0068862_100065017
213 Ga0081455_10001250
214 Ga0081455_10002269
215 Ga0081455_10003843
216 Ga0081455_10053646
217 Ga0081455_10089603
218 Ga0081539_10000111
219 Ga0075365_10039738
220 Ga0075364_10042111
221 Ga0075432_10000195
222 Ga0075370_10020956
223 Ga0075428_100002502
224 Ga0075428_100029513
225 Ga0075428_100083039
226 Ga0075431_100004642
227 Ga0075433_10006684
228 Ga0075433_10053103
229 Ga0075434_100001648
230 Ga0075429_100011137
231 Ga0068865_100011056
232 Ga0068865_100011461
233 Ga0075436_100000502
234 Ga0075436_100053909
235 Ga0075435_100000521
236 Ga0111539_10000276
237 Ga0114129_10004125
238 Ga0105243_10003758
239 Ga0105243_10012182
240 Ga0105243_10036300
241 Ga0105242_10073485
242 Ga0105248_10026920
243 Ga0105249_10057009
244 Ga0105249_10059371
245 Ga0105246_10023092
246 Ga0157369_10003534
247 Ga0157372_10018178
248 Ga0157380_10004182
249 Ga0157377_10007185
250 Ga0157379_10020039
251 Ga0213875_10004687
252 Ga0207680_10005332
253 Ga0207705_10005052
254 Ga0207654_10057900
255 Ga0207707_10080528
256 Ga0207695_10021395
257 Ga0207660_10027779
258 Ga0207652_10040989
259 Ga0207652_10051370
260 Ga0207687_10039757
261 Ga0207687_10048185
262 Ga0207664_10000002
263 Ga0207690_10000065
264 Ga0207690_10047826
265 Ga0207706_10004971
266 Ga0207709_10065599
267 Ga0207691_10001843
268 Ga0207711_10118562
269 Ga0207667_10020701
270 Ga0207667_10037617
271 Ga0207712_10006751
272 Ga0207712_10062365
273 Ga0207668_10041416
274 Ga0207658_10005063
275 Ga0207677_10001404
276 Ga0207641_10030201
277 Ga0207648_10001531
278 Ga0207675_100002452
279 Ga0207675_100002597
280 Ga0207675_100020588
281 Ga0207428_10000293
282 Ga0268265_10051658
283 Ga0268264_10000390
284 Ga0307413_10018663
285 Ga0307413_10020233
286 Ga0307410_10006080
287 Ga0307410_10043871
288 Ga0307410_10064288
289 Ga0307406_10000033
290 Ga0307407_10025868
291 Ga0307407_10027653
292 Ga0307409_100000041
293 Ga0307414_10003385
294 Ga0307414_10044872
295 Ga0307414_10064447
296 Ga0307415_100057797
297 Ga0373956_0000308
298 Ga0395900_0009373
299 Ga0436364_1004275
300 Ga0436365_0075664
301 Ga0439463_006402
302 Ga0439463_010257
303 Ga0439435_0000872
304 Ga0466969_0001475
305 Ga0466972_0033676
306 Ga0466966_0014815
307 Ga0466961_0002528
308 Ga0466970_0038962
309 Ga0466959_0011989
310 Ga0466958_0011413
311 Ga0466967_0092696
312 Ga0495616_0027163
313 Ga0495620_0014850
314 Ga0496102_0028565
315 Ga0496108_0007125
316 Ga0496109_0010644
317 Ga0496109_0052328
318 Ga0496126_0000026
319 Ga0501031_0000318
320 Ga0501032_0001592
321 Ga0501033_0001667
322 Ga0501034_0002945
323 Ga0501036_0003231
324 Ga0501036_0018753
325 Ga0501037_0006059
326 Ga0501038_0001624
327 Ga0501038_0025104
328 Ga0501039_0000401
329 Ga0501039_0004335
330 Ga0501040_0042248
331 Ga0501041_0020804
332 Ga0501042_0024002
333 Ga0501043_0016051
334 Ga0501046_0003565
335 Ga0501047_0004264
336 Ga0501048_0000197
337 Ga0501048_0034968
338 Ga0501070_0002911
339 Ga0501072_0049406
340 Ga0501074_0009686
341 Ga0501077_0006031
342 Ga0501079_0059302
343 Ga0501080_0003486
344 Ga0501035_0002803
345 Ga0501035_0066960
346 Ga0501044_0075477
347 nmdc:mga00v17_8918_c1
348 nmdc:mga05p37_113227_c1
349 nmdc:mga09592_9914_c1
350 nmdc:mga08y16_16659_c1
351 nmdc:mga0n895_13972_c1
352 nmdc:mga08x19_1048_c1
353 nmdc:mga0a205_36070_c1
354 Ga0501084_0002840
355 Ga0501082_0010556
356 Ga0501082_0017114
357 2644535447
358 2784471615
359 2863068858
360 2866553120
361 2883824235
362 2984576937
363 2990258684
364 3001890743
365 8053946453
366 8056215429

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00570

HRDC

HRDC domain

732

798

0.97

PF00580

UvrD-helicase

UvrD/REP helicase N-terminal domain

107

372

0.89

PF13245

AAA_19

AAA domain

111

357

0.88

PF13361

UvrD_C

UvrD-like helicase C-terminal domain

377

521

0.87

PF13538

UvrD_C_2

UvrD-like helicase C-terminal domain

598

657

0.79

PF13361

UvrD_C

UvrD-like helicase C-terminal domain

503

661

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wud-assembly1.cif.gz_A e. coli recq hrdc domain 0.9831 635 710
2rhf-assembly1.cif.gz_A d. radiodurans recq hrdc domain 3 0.96 640 708
1wud-assembly1.cif.gz_A e. coli recq hrdc domain 0.9583 635 710
1yt3-assembly1.cif.gz_A crystal structure of escherichia coli rnase d, an exoribonuclease involved in structured rna processing 0.939 640 708
2rhf-assembly1.cif.gz_A d. radiodurans recq hrdc domain 3 0.8639 640 708
ID Description Score Start End Superfamily
2rhfA00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain 0.9535 640 708 1.10.150.80
1yt3A02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain 0.939 640 708 1.10.150.80
af_Q4CPU1_1085_1174_1.10.150.80 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain 0.9312 639 711 1.10.150.80
4cgzA04 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain 0.9261 638 709 1.10.150.80
1wudA00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain 0.9244 635 709 1.10.150.80
ID Description Score Start End GO Terms
AF-A0A7X3A6R0-F1-model_v4 Aldolase 0.9864 636 706 GO:0000166
GO:0003676
AF-A0A7W0Y001-F1-model_v4 ATP-dependent helicase 0.9856 10 293 GO:0000725
GO:0003677
GO:0005524
GO:0005829
GO:0016787
GO:0033202
GO:0043138
AF-A0A7W0Y001-F1-model_v4 ATP-dependent helicase 0.9754 10 293 GO:0000725
GO:0003677
GO:0005524
GO:0005829
GO:0016787
GO:0033202
GO:0043138
AF-A0A256WFU7-F1-model_v4 HRDC domain-containing protein 0.9514 638 711 GO:0000166
GO:0003676
AF-A0A6I2VEF0-F1-model_v4 DNA 3'-5' helicase (EC 5.6.2.4) 0.9511 18 510 GO:0000725
GO:0003677
GO:0005524
GO:0005829
GO:0009378
GO:0016787
GO:0016853
GO:0033202
GO:0036121
GO:0061749
GO:1990518

Map