F280394

General Info

Members Datasets Scaffolds Average Seq Length
183 122 366 244

Family's Representative Sequence

Representative Sequence 3300005435|Ga0070714_100064787|Ga0070714_1000647872
Length 267
Sequence LPKPIGAGRATLWFADHRNLLRYHRSIPSEWKDNLRVVMVATRNPLNIGAAARAMANFGFSRLRVVQPYDVAFREARSAVGAAPLLAAAEEFPDVAEAVADCTLVVGTTSVGHRELQHPLRRLEYGARLIHRRTAQSPVALLFGSEKFGLSNDDLAHCHWLMRIPTVDRDLSMNLGQAVALCLYELARDPHAVDARPERIKPASAGDVEQVTRLLLEALQRSGYANPVTEASTEEKVRRLVRRLDIAQRDAPVLLGMLRQILWKIGQ

Samples

Sample ID Description Type Environment
1 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
22 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
23 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
24 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
30 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
40 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
41 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
42 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
43 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
59 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
60 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
61 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
63 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
64 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
65 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
66 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
67 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
68 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
69 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
70 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
71 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
72 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
73 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
74 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
75 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
76 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
77 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
78 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
79 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
80 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
81 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
82 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
83 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
84 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
87 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
88 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
89 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
90 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
91 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
92 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
93 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
94 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
95 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
96 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
97 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
98 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
99 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
100 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
101 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
102 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
103 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
104 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
105 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
106 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
107 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
108 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
109 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
110 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
111 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
112 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
113 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
114 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
115 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
116 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
117 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
118 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
119 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
120 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
121 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
122 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.45
Metatranscriptomes 0.55
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.55
Rhizosphere 94.54
Stem 0
Stem Tuber 0
Unclassified 22.95

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070714_100064787 3300005435 Bacteria 3147
2 Ga0070683_100000049 3300005329 Bacteria 93310
3 Ga0070683_100672129 3300005329 Bacteria 992
4 Ga0070690_100201645 3300005330 Archaea 1385
5 Ga0070709_10008595 3300005434 Bacteria 5614
6 Ga0070713_100028997 3300005436 Bacteria 4376
7 Ga0070711_100020916 3300005439 Bacteria 4225
8 Ga0070711_100111907 3300005439 Bacteria 2005
9 Ga0070708_100018223 3300005445 Bacteria 5875
10 Ga0070708_100038097 3300005445 Bacteria 4198
11 Ga0070708_100258913 3300005445 Bacteria 1635
12 Ga0070681_10012855 3300005458 Bacteria 8312
13 Ga0070707_100001233 3300005468 Bacteria 25094
14 Ga0070707_100046362 3300005468 Bacteria 4160
15 Ga0070707_100073836 3300005468 Bacteria 3289
16 Ga0070707_100639768 3300005468 Unclassified 1026
17 Ga0070698_100651934 3300005471 Bacteria 994
18 Ga0070699_100036789 3300005518 Bacteria 4234
19 Ga0070679_100170619 3300005530 Bacteria 2148
20 Ga0070684_100000040 3300005535 Bacteria 93306
21 Ga0070697_100000695 3300005536 Bacteria 25189
22 Ga0070697_100056960 3300005536 Bacteria 3180
23 Ga0070697_100082906 3300005536 Bacteria 2644
24 Ga0070697_100244981 3300005536 Unclassified 1531
25 Ga0070696_100004279 3300005546 Bacteria 9512
26 Ga0070665_100056503 3300005548 Bacteria 3935
27 Ga0068855_100101531 3300005563 Unclassified 3311
28 Ga0068852_100716410 3300005616 Unclassified 1011
29 Ga0068858_100652984 3300005842 Bacteria 1022
30 Ga0081455_10175226 3300005937 Bacteria 1629
31 Ga0070715_10008622 3300006163 Bacteria 3560
32 Ga0070715_10025313 3300006163 Bacteria 2349
33 Ga0070716_100022946 3300006173 Unclassified 3303
34 Ga0070712_100001601 3300006175 Bacteria 13837
35 Ga0075436_100012368 3300006914 Bacteria 5850
36 Ga0075436_100323900 3300006914 Bacteria 1107
37 Ga0105240_10009877 3300009093 Bacteria 13465
38 Ga0105240_10172700 3300009093 Bacteria 2558
39 Ga0105240_10819778 3300009093 Bacteria 1007
40 Ga0114129_10336245 3300009147 Unclassified 2004
41 Ga0105248_10016896 3300009177 Bacteria 8034
42 Ga0105248_10084335 3300009177 Bacteria 3574
43 Ga0105248_10198253 3300009177 Bacteria 2262
44 Ga0105248_10830721 3300009177 Bacteria 1043
45 Ga0105237_10093762 3300009545 Bacteria 2991
46 Ga0105238_10089212 3300009551 Bacteria 3070
47 Ga0099796_10001402 3300010159 Bacteria 4827
48 Ga0105239_10567167 3300010375 Bacteria 1293
49 Ga0157370_10212696 3300013104 Bacteria 1792
50 Ga0157369_10108330 3300013105 Bacteria 2955
51 Ga0157374_10170436 3300013296 Bacteria 2123
52 Ga0157374_10674650 3300013296 Unclassified 1046
53 Ga0157378_10078208 3300013297 Bacteria 2983
54 Ga0163163_10132011 3300014325 Bacteria 2538
55 Ga0163163_10204201 3300014325 Unclassified 2024
56 Ga0163163_10307293 3300014325 Unclassified 1638
57 Ga0182008_10041442 3300014497 Unclassified 2296
58 Ga0157376_10857184 3300014969 Bacteria 924
59 Ga0182006_1028109 3300015261 Bacteria 2290
60 Ga0182007_10022397 3300015262 Bacteria 2232
61 Ga0213876_10002593 3300021384 Bacteria 10559
62 Ga0213875_10078691 3300021388 Bacteria 1538
63 Ga0207685_10034436 3300025905 Bacteria 1840
64 Ga0207699_10003640 3300025906 Bacteria 7364
65 Ga0207707_10022018 3300025912 Bacteria 5571
66 Ga0207707_10212112 3300025912 Unclassified 1686
67 Ga0207695_10111028 3300025913 Unclassified 2721
68 Ga0207693_10001375 3300025915 Bacteria 21568
69 Ga0207652_10326392 3300025921 Unclassified 1386
70 Ga0207646_10003056 3300025922 Bacteria 19262
71 Ga0207646_10042807 3300025922 Bacteria 4068
72 Ga0207646_10053912 3300025922 Bacteria 3597
73 Ga0207646_10099809 3300025922 Bacteria 2602
74 Ga0207694_10051647 3300025924 Bacteria 3186
75 Ga0207700_10311027 3300025928 Bacteria 1363
76 Ga0207670_10092780 3300025936 Bacteria 2138
77 Ga0207665_10007120 3300025939 Bacteria 7406
78 Ga0207665_10015003 3300025939 Bacteria 5089
79 Ga0207665_10185898 3300025939 Unclassified 1507
80 Ga0207711_10137388 3300025941 Bacteria 2196
81 Ga0207711_10248805 3300025941 Bacteria 1632
82 Ga0207661_10000050 3300025944 Bacteria 93646
83 Ga0207661_10575090 3300025944 Bacteria 1033
84 Ga0207667_10160712 3300025949 Bacteria 2311
85 Ga0268266_10043831 3300028379 Bacteria 3824
86 Ga0265336_10017811 3300028666 Unclassified 2309
87 Ga0265338_10001594 3300028800 Bacteria 36404
88 Ga0265338_10004172 3300028800 Bacteria 19720
89 Ga0265324_10080717 3300029957 Bacteria 1107
90 Ga0265762_1000050 3300030760 Bacteria 14507
91 Ga0265332_10023115 3300031238 Bacteria 2742
92 Ga0265328_10077177 3300031239 Bacteria 1226
93 Ga0265325_10020573 3300031241 Bacteria 3637
94 Ga0265325_10089851 3300031241 Bacteria 1516
95 Ga0265329_10046680 3300031242 Bacteria 1383
96 Ga0265329_10053829 3300031242 Bacteria 1278
97 Ga0265340_10009670 3300031247 Bacteria 5168
98 Ga0265340_10110705 3300031247 Bacteria 1270
99 Ga0265339_10007488 3300031249 Bacteria 7051
100 Ga0265339_10067199 3300031249 Bacteria 1918
101 Ga0265339_10116919 3300031249 Bacteria 1374
102 Ga0265331_10017979 3300031250 Bacteria 3675
103 Ga0265331_10071254 3300031250 Bacteria 1626
104 Ga0265331_10114875 3300031250 Unclassified 1233
105 Ga0265316_10002549 3300031344 Bacteria 18826
106 Ga0265316_10008870 3300031344 Bacteria 9286
107 Ga0265316_10019614 3300031344 Bacteria 5777
108 Ga0265316_10022359 3300031344 Bacteria 5332
109 Ga0265316_10022642 3300031344 Bacteria 5291
110 Ga0265316_10246541 3300031344 Bacteria 1312
111 Ga0265316_10254882 3300031344 Bacteria 1287
112 Ga0265314_10005038 3300031711 Bacteria 12038
113 Ga0265314_10144253 3300031711 Bacteria 1468
114 Ga0265342_10012058 3300031712 Bacteria 5869
115 Ga0307405_10116465 3300031731 Bacteria 1820
116 Ga0307413_10056591 3300031824 Bacteria 2393
117 Ga0307410_10603940 3300031852 Bacteria 915
118 Ga0307409_100056143 3300031995 Bacteria 3044
119 Ga0307416_100031274 3300032002 Bacteria 4004
120 Ga0373956_0002464 3300035119 Bacteria 7537
121 Ga0373955_0041310 3300035172 Unclassified 2471
122 Ga0373935_0504226 3300035692 Unclassified 879
123 Ga0373927_0159056 3300035695 Unclassified 1480
124 Ga0373933_0000430 3300035724 Bacteria 26421
125 Ga0373947_0481849 3300035725 Unclassified 842
126 Ga0373937_0000207 3300036401 Bacteria 56741
127 Ga0373937_0218930 3300036401 Bacteria 1792
128 Ga0436364_0460198 3300037853 Unclassified 1134
129 Ga0436364_0599180 3300037853 Bacteria 1840
130 Ga0436364_0743980 3300037853 Unclassified 3768
131 Ga0436365_0028339 3300039437 Unclassified 844
132 Ga0436365_0513920 3300039437 Bacteria 43713
133 Ga0436365_0746324 3300039437 Bacteria 1948
134 Ga0436362_0517644 3300039453 Bacteria 2099
135 Ga0453683_0038914 3300044673 Bacteria 2989
136 Ga0453684_0000545 3300044712 Bacteria 142482
137 Ga0495651_0003764 3300046462 Bacteria 11603
138 Ga0495580_0003125 3300046472 Bacteria 14188
139 Ga0495580_0021543 3300046472 Bacteria 4753
140 Ga0495580_0044874 3300046472 Unclassified 3142
141 Ga0495580_0479649 3300046472 Bacteria 832
142 Ga0495582_0004814 3300046473 Bacteria 7574
143 Ga0495664_0015368 3300046477 Unclassified 4350
144 Ga0495594_0006840 3300046499 Bacteria 5862
145 Ga0495608_0060886 3300046511 Unclassified 2484
146 Ga0495628_0200292 3300046516 Unclassified 1504
147 Ga0495666_0052542 3300046526 Bacteria 1956
148 Ga0495652_0043453 3300046529 Unclassified 3870
149 Ga0495652_0075315 3300046529 Unclassified 2803
150 Ga0495665_0095368 3300046531 Bacteria 1562
151 Ga0495665_0096911 3300046531 Unclassified 1549
152 Ga0495586_0058863 3300046535 Unclassified 2087
153 Ga0495587_0000145 3300046536 Bacteria 52947
154 Ga0495645_0001696 3300046543 Bacteria 14970
155 Ga0495667_0242451 3300046559 Bacteria 1148
156 Ga0495667_0317774 3300046559 Unclassified 985
157 Ga0495634_0051116 3300046642 Bacteria 2774
158 Ga0495635_0621516 3300046663 Bacteria 704
159 Ga0495658_0143167 3300046683 Bacteria 1463
160 Ga0495613_0062477 3300046689 Unclassified 2725
161 Ga0495581_0007646 3300047315 Bacteria 6252
162 Ga0495604_0034923 3300047317 Unclassified 3973
163 Ga0495604_0055209 3300047317 Unclassified 3062
164 Ga0495674_0134729 3300047319 Bacteria 2079
165 Ga0495674_0165313 3300047319 Unclassified 1849
166 Ga0495674_0192541 3300047319 Unclassified 1694
167 Ga0495676_0020452 3300047321 Bacteria 5806
168 Ga0495680_0143378 3300047322 Unclassified 1746
169 Ga0495675_0000663 3300047444 Bacteria 21671
170 Ga0495684_0004552 3300047471 Bacteria 10831
171 Ga0495684_0007683 3300047471 Bacteria 8343
172 Ga0495684_0112791 3300047471 Bacteria 2050
173 Ga0495684_0315483 3300047471 Bacteria 1119
174 Ga0495602_0000224 3300048088 Bacteria 52889
175 Ga0495602_0131205 3300048088 Unclassified 1998
176 Ga0495614_0062489 3300048089 Bacteria 1600
177 Ga0496115_0028303 3300048918 Bacteria 4391
178 Ga0496126_0028569 3300048929 Bacteria 5313
179 Ga0501249_008238 3300049679 Bacteria 2162
180 nmdc:mga08x19_693_c1 3300050514 Bacteria 21639
181 nmdc:mga0a205_470334_c1 3300050515 Unclassified 1116
182 Ga0495601_0063272 3300053077 Unclassified 2352
183 Ga0501082_0477143 3300060353 Unclassified 1090
184 Ga0070714_100064787
185 Ga0070683_100000049
186 Ga0070683_100672129
187 Ga0070690_100201645
188 Ga0070709_10008595
189 Ga0070713_100028997
190 Ga0070711_100020916
191 Ga0070711_100111907
192 Ga0070708_100018223
193 Ga0070708_100038097
194 Ga0070708_100258913
195 Ga0070681_10012855
196 Ga0070707_100001233
197 Ga0070707_100046362
198 Ga0070707_100073836
199 Ga0070707_100639768
200 Ga0070698_100651934
201 Ga0070699_100036789
202 Ga0070679_100170619
203 Ga0070684_100000040
204 Ga0070697_100000695
205 Ga0070697_100056960
206 Ga0070697_100082906
207 Ga0070697_100244981
208 Ga0070696_100004279
209 Ga0070665_100056503
210 Ga0068855_100101531
211 Ga0068852_100716410
212 Ga0068858_100652984
213 Ga0081455_10175226
214 Ga0070715_10008622
215 Ga0070715_10025313
216 Ga0070716_100022946
217 Ga0070712_100001601
218 Ga0075436_100012368
219 Ga0075436_100323900
220 Ga0105240_10009877
221 Ga0105240_10172700
222 Ga0105240_10819778
223 Ga0114129_10336245
224 Ga0105248_10016896
225 Ga0105248_10084335
226 Ga0105248_10198253
227 Ga0105248_10830721
228 Ga0105237_10093762
229 Ga0105238_10089212
230 Ga0099796_10001402
231 Ga0105239_10567167
232 Ga0157370_10212696
233 Ga0157369_10108330
234 Ga0157374_10170436
235 Ga0157374_10674650
236 Ga0157378_10078208
237 Ga0163163_10132011
238 Ga0163163_10204201
239 Ga0163163_10307293
240 Ga0182008_10041442
241 Ga0157376_10857184
242 Ga0182006_1028109
243 Ga0182007_10022397
244 Ga0213876_10002593
245 Ga0213875_10078691
246 Ga0207685_10034436
247 Ga0207699_10003640
248 Ga0207707_10022018
249 Ga0207707_10212112
250 Ga0207695_10111028
251 Ga0207693_10001375
252 Ga0207652_10326392
253 Ga0207646_10003056
254 Ga0207646_10042807
255 Ga0207646_10053912
256 Ga0207646_10099809
257 Ga0207694_10051647
258 Ga0207700_10311027
259 Ga0207670_10092780
260 Ga0207665_10007120
261 Ga0207665_10015003
262 Ga0207665_10185898
263 Ga0207711_10137388
264 Ga0207711_10248805
265 Ga0207661_10000050
266 Ga0207661_10575090
267 Ga0207667_10160712
268 Ga0268266_10043831
269 Ga0265336_10017811
270 Ga0265338_10001594
271 Ga0265338_10004172
272 Ga0265324_10080717
273 Ga0265762_1000050
274 Ga0265332_10023115
275 Ga0265328_10077177
276 Ga0265325_10020573
277 Ga0265325_10089851
278 Ga0265329_10046680
279 Ga0265329_10053829
280 Ga0265340_10009670
281 Ga0265340_10110705
282 Ga0265339_10007488
283 Ga0265339_10067199
284 Ga0265339_10116919
285 Ga0265331_10017979
286 Ga0265331_10071254
287 Ga0265331_10114875
288 Ga0265316_10002549
289 Ga0265316_10008870
290 Ga0265316_10019614
291 Ga0265316_10022359
292 Ga0265316_10022642
293 Ga0265316_10246541
294 Ga0265316_10254882
295 Ga0265314_10005038
296 Ga0265314_10144253
297 Ga0265342_10012058
298 Ga0307405_10116465
299 Ga0307413_10056591
300 Ga0307410_10603940
301 Ga0307409_100056143
302 Ga0307416_100031274
303 Ga0373956_0002464
304 Ga0373955_0041310
305 Ga0373935_0504226
306 Ga0373927_0159056
307 Ga0373933_0000430
308 Ga0373947_0481849
309 Ga0373937_0000207
310 Ga0373937_0218930
311 Ga0436364_0460198
312 Ga0436364_0599180
313 Ga0436364_0743980
314 Ga0436365_0028339
315 Ga0436365_0513920
316 Ga0436365_0746324
317 Ga0436362_0517644
318 Ga0453683_0038914
319 Ga0453684_0000545
320 Ga0495651_0003764
321 Ga0495580_0003125
322 Ga0495580_0021543
323 Ga0495580_0044874
324 Ga0495580_0479649
325 Ga0495582_0004814
326 Ga0495664_0015368
327 Ga0495594_0006840
328 Ga0495608_0060886
329 Ga0495628_0200292
330 Ga0495666_0052542
331 Ga0495652_0043453
332 Ga0495652_0075315
333 Ga0495665_0095368
334 Ga0495665_0096911
335 Ga0495586_0058863
336 Ga0495587_0000145
337 Ga0495645_0001696
338 Ga0495667_0242451
339 Ga0495667_0317774
340 Ga0495634_0051116
341 Ga0495635_0621516
342 Ga0495658_0143167
343 Ga0495613_0062477
344 Ga0495581_0007646
345 Ga0495604_0034923
346 Ga0495604_0055209
347 Ga0495674_0134729
348 Ga0495674_0165313
349 Ga0495674_0192541
350 Ga0495676_0020452
351 Ga0495680_0143378
352 Ga0495675_0000663
353 Ga0495684_0004552
354 Ga0495684_0007683
355 Ga0495684_0112791
356 Ga0495684_0315483
357 Ga0495602_0000224
358 Ga0495602_0131205
359 Ga0495614_0062489
360 Ga0496115_0028303
361 Ga0496126_0028569
362 Ga0501249_008238
363 nmdc:mga08x19_693_c1
364 nmdc:mga0a205_470334_c1
365 Ga0495601_0063272
366 Ga0501082_0477143

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00588

SpoU_methylase

SpoU rRNA Methylase family

34

184

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
4cnd-assembly1.cif.gz_B crystal structure of e.coli trmj 0.9079 14 178
4cne-assembly1.cif.gz_A crystal structure of e.coli trmj in complex with s-adenosyl-l- homocysteine 0.8925 14 172
3onp-assembly1.cif.gz_A-2 crystal structure of trna/rrna methyltransferase spou from rhodobacter sphaeroides 0.8894 19 174
4cnd-assembly1.cif.gz_B crystal structure of e.coli trmj 0.8812 14 178
3kty-assembly1.cif.gz_A-2 crystal structure of probable methyltransferase from bordetella pertussis tohama i 0.8807 14 172
ID Description Score Start End Superfamily
3onpA00 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.9085 19 174 3.40.1280.10
4cndB01 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.9082 15 178 3.40.1280.10
3onpA00 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8974 19 174 3.40.1280.10
4cndB01 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8972 15 178 3.40.1280.10
4cngB00 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8437 19 174 3.40.1280.10
ID Description Score Start End GO Terms
AF-A0A7V8NMC7-F1-model_v4 RNA methyltransferase 0.9489 6 169 GO:0002128
GO:0003723
GO:0005829
GO:0008173
AF-A0A6L3XU80-F1-model_v4 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase) 0.9196 19 169 GO:0002128
GO:0003723
GO:0005829
GO:0160206
AF-A0A6L3XU80-F1-model_v4 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase) 0.897 19 169 GO:0002128
GO:0003723
GO:0005829
GO:0160206
AF-A0A7C3R1A0-F1-model_v4 rRNA methyltransferase 0.8892 18 174 GO:0002128
GO:0003723
GO:0005829
GO:0008173
AF-A0A256WF56-F1-model_v4 tRNA/rRNA methyltransferase 0.8877 18 146 GO:0002128
GO:0003723
GO:0005829
GO:0008173

Map