F279889

General Info

Members Datasets Scaffolds Average Seq Length
182 89 364 240

Family's Representative Sequence

Representative Sequence 3300050507|nmdc:mga05p37_9708_c1|nmdc:mga05p37_9708_c1_4578_5390
Length 270
Sequence MRFNSHTKLPNTPLAGRHAQCVLDTMPMQDTGVIMSNEQCRFAPLALLRLQSWLSPAFPTGSYSYSHGIEWAVEAGHIHDRKSLVDWLEADLCYGAGRNEAIFFSEAWRCAIEDDRAKLFEIAELAAVFRGTSEFALESSQQAAACLATLRKVWPDRVLDWLSEILCERHVQPALAVVLGIRSARQGTPASLALPAFLQSHIANLVTAGVRLVPLGQTDGQLAIAELEEAVLAASAQVKEATINDLGSAAFMVDLSSMAHETQYTRLFRS

Samples

Sample ID Description Type Environment
1 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
4 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
26 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
27 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
28 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
29 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
47 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
65 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
66 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
73 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
74 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
75 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
76 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
77 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
78 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
79 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
80 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
81 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
82 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
83 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
84 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
85 2935777560 Bradyrhizobium sp. LB14.3 Isolate Nodule
86 2941531003 Bradyrhizobium sp. LB11.1 Isolate Nodule
87 8016603502 Bradyrhizobium sp. LB7.2 Isolate Nodule
88 8016613128 Bradyrhizobium sp. LB7.1 Isolate Nodule
89 8019538911 Bradyrhizobium sp. LB9.1b Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 96.15
Metatranscriptomes 0
Isolates 3.85

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.85
Nodule 3.85
Rhizoplane 0.55
Rhizosphere 90.66
Stem 0
Stem Tuber 0
Unclassified 12.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga05p37_9708_c1 3300050507 Bacteria 11411
2 rootH1_10026500 3300003323 Bacteria 11424
3 JGI25160J50197_1006968 3300003354 Bacteria 4489
4 Ga0055543_1021282 3300004625 Bacteria 1184
5 Ga0065165_1006510 3300005262 Bacteria 6095
6 Ga0070666_10167635 3300005335 Bacteria 1537
7 Ga0070680_100082028 3300005336 Bacteria 2661
8 Ga0070709_10028901 3300005434 Bacteria 3310
9 Ga0070709_10069721 3300005434 Unclassified 2265
10 Ga0070709_10501573 3300005434 Unclassified 922
11 Ga0070714_100315946 3300005435 Bacteria 1460
12 Ga0070714_100393343 3300005435 Bacteria 1309
13 Ga0070713_100087236 3300005436 Unclassified 2676
14 Ga0070713_100131984 3300005436 Bacteria 2203
15 Ga0070713_100177933 3300005436 Unclassified 1910
16 Ga0070713_100288411 3300005436 Bacteria 1508
17 Ga0070711_100005281 3300005439 Bacteria 7709
18 Ga0070711_100062131 3300005439 Bacteria 2603
19 Ga0070711_100167503 3300005439 Bacteria 1672
20 Ga0070711_100197334 3300005439 Bacteria 1551
21 Ga0070705_100176894 3300005440 Bacteria 1442
22 Ga0070708_100002580 3300005445 Bacteria 14022
23 Ga0070708_100003330 3300005445 Bacteria 12570
24 Ga0070708_100008129 3300005445 Bacteria 8413
25 Ga0070708_100011558 3300005445 Bacteria 7187
26 Ga0070708_100147185 3300005445 Bacteria 2188
27 Ga0070708_100193934 3300005445 Bacteria 1900
28 Ga0070708_100565657 3300005445 Bacteria 1072
29 Ga0070681_10047121 3300005458 Bacteria 4308
30 Ga0070706_100000618 3300005467 Bacteria 41035
31 Ga0070706_100009663 3300005467 Bacteria 8967
32 Ga0070706_100038846 3300005467 Unclassified 4393
33 Ga0070706_100097038 3300005467 Bacteria 2737
34 Ga0070706_100099511 3300005467 Bacteria 2701
35 Ga0070706_100155391 3300005467 Bacteria 2136
36 Ga0070706_100783804 3300005467 Bacteria 883
37 Ga0070707_100003412 3300005468 Bacteria 15012
38 Ga0070707_100024764 3300005468 Bacteria 5689
39 Ga0070707_100162050 3300005468 Bacteria 2179
40 Ga0070707_100188725 3300005468 Bacteria 2009
41 Ga0070707_100238960 3300005468 Unclassified 1768
42 Ga0070707_100250966 3300005468 Bacteria 1722
43 Ga0070698_100033752 3300005471 Bacteria 5301
44 Ga0070698_100038659 3300005471 Bacteria 4916
45 Ga0070698_100087146 3300005471 Bacteria 3108
46 Ga0070698_100236141 3300005471 Bacteria 1761
47 Ga0070699_100031224 3300005518 Unclassified 4598
48 Ga0070699_100048612 3300005518 Bacteria 3671
49 Ga0070699_100129771 3300005518 Bacteria 2221
50 Ga0070699_100140082 3300005518 Bacteria 2135
51 Ga0070699_100598534 3300005518 Bacteria 1005
52 Ga0070679_100025862 3300005530 Bacteria 5760
53 Ga0070697_100003789 3300005536 Bacteria 11611
54 Ga0070697_100014523 3300005536 Bacteria 6186
55 Ga0070697_100027522 3300005536 Bacteria 4549
56 Ga0070697_100036682 3300005536 Bacteria 3960
57 Ga0070697_100130937 3300005536 Bacteria 2104
58 Ga0070697_100327864 3300005536 Bacteria 1319
59 Ga0070697_100666108 3300005536 Bacteria 917
60 Ga0070695_100353520 3300005545 Bacteria 1102
61 Ga0070696_100391899 3300005546 Bacteria 1085
62 Ga0068858_100060778 3300005842 Bacteria 3492
63 Ga0081455_10021417 3300005937 Bacteria 6064
64 Ga0081455_10069092 3300005937 Unclassified 2939
65 Ga0081540_1000019 3300005983 Bacteria 163281
66 Ga0081540_1010112 3300005983 Bacteria 6421
67 Ga0081540_1094945 3300005983 Bacteria 1301
68 Ga0070717_10025909 3300006028 Bacteria 4673
69 Ga0070717_10066604 3300006028 Bacteria 2996
70 Ga0070717_10419384 3300006028 Unclassified 1204
71 Ga0075364_10096495 3300006051 Bacteria 1966
72 Ga0070716_100071877 3300006173 Bacteria 2035
73 Ga0070716_100212373 3300006173 Bacteria 1294
74 Ga0070712_100021272 3300006175 Bacteria 4258
75 Ga0070712_100043928 3300006175 Bacteria 3079
76 Ga0070712_100072634 3300006175 Unclassified 2465
77 Ga0070712_100305561 3300006175 Unclassified 1289
78 Ga0075428_100016979 3300006844 Bacteria 8041
79 Ga0075431_100033496 3300006847 Bacteria 5294
80 Ga0075433_10006835 3300006852 Bacteria 9042
81 Ga0075434_100007837 3300006871 Bacteria 9894
82 Ga0075434_100016233 3300006871 Bacteria 7157
83 Ga0075434_100039940 3300006871 Bacteria 4648
84 Ga0075434_100323197 3300006871 Bacteria 1563
85 Ga0075429_100015760 3300006880 Bacteria 6546
86 Ga0075436_100272021 3300006914 Bacteria 1210
87 Ga0075436_100375930 3300006914 Bacteria 1027
88 Ga0075436_100376733 3300006914 Bacteria 1026
89 Ga0075435_100096432 3300007076 Bacteria 2447
90 Ga0099794_10017527 3300007265 Bacteria 3194
91 Ga0099794_10071512 3300007265 Bacteria 1700
92 Ga0099794_10093736 3300007265 Bacteria 1493
93 Ga0114129_10153961 3300009147 Bacteria 3145
94 Ga0114129_10542302 3300009147 Unclassified 1514
95 Ga0105242_10351154 3300009176 Bacteria 1362
96 Ga0105238_10147013 3300009551 Unclassified 2333
97 Ga0105249_10015613 3300009553 Bacteria 6723
98 Ga0157378_10015322 3300013297 Bacteria 6715
99 Ga0163162_10305338 3300013306 Bacteria 1724
100 Ga0157372_10455022 3300013307 Bacteria 1492
101 Ga0157376_10335995 3300014969 Bacteria 1441
102 Ga0207426_1006988 3300025302 Bacteria 4795
103 Ga0207426_1022706 3300025302 Bacteria 2149
104 Ga0207692_10185788 3300025898 Unclassified 1214
105 Ga0207680_10195371 3300025903 Bacteria 1376
106 Ga0207647_10236802 3300025904 Bacteria 1049
107 Ga0207685_10021687 3300025905 Bacteria 2157
108 Ga0207685_10138581 3300025905 Bacteria 1088
109 Ga0207699_10025188 3300025906 Bacteria 3264
110 Ga0207699_10537808 3300025906 Bacteria 846
111 Ga0207684_10001285 3300025910 Bacteria 27685
112 Ga0207684_10033557 3300025910 Unclassified 4364
113 Ga0207684_10033800 3300025910 Bacteria 4349
114 Ga0207684_10059578 3300025910 Bacteria 3242
115 Ga0207684_10312659 3300025910 Bacteria 1354
116 Ga0207684_10549885 3300025910 Bacteria 988
117 Ga0207693_10018731 3300025915 Bacteria 5510
118 Ga0207693_10071417 3300025915 Bacteria 2717
119 Ga0207693_10215427 3300025915 Bacteria 1509
120 Ga0207693_10243940 3300025915 Bacteria 1410
121 Ga0207693_10263346 3300025915 Bacteria 1351
122 Ga0207693_10371607 3300025915 Bacteria 1118
123 Ga0207663_10003188 3300025916 Bacteria 7975
124 Ga0207663_10069261 3300025916 Bacteria 2269
125 Ga0207663_10106421 3300025916 Bacteria 1896
126 Ga0207663_10365938 3300025916 Bacteria 1095
127 Ga0207652_10141604 3300025921 Unclassified 2150
128 Ga0207646_10000353 3300025922 Bacteria 62321
129 Ga0207646_10114899 3300025922 Unclassified 2417
130 Ga0207646_10130873 3300025922 Bacteria 2258
131 Ga0207646_10215600 3300025922 Bacteria 1734
132 Ga0207646_10381019 3300025922 Bacteria 1274
133 Ga0207646_10676391 3300025922 Unclassified 924
134 Ga0207700_10075135 3300025928 Unclassified 2617
135 Ga0207700_10102195 3300025928 Bacteria 2289
136 Ga0207700_10340970 3300025928 Bacteria 1303
137 Ga0207664_10290344 3300025929 Bacteria 1437
138 Ga0207665_10017537 3300025939 Bacteria 4705
139 Ga0207665_10021153 3300025939 Bacteria 4276
140 Ga0207665_10086325 3300025939 Bacteria 2167
141 Ga0207665_10092431 3300025939 Bacteria 2099
142 Ga0207665_10103621 3300025939 Bacteria 1990
143 Ga0207665_10155628 3300025939 Bacteria 1640
144 Ga0207665_10435408 3300025939 Bacteria 1004
145 Ga0207712_10205483 3300025961 Bacteria 1565
146 Ga0207703_10167749 3300026035 Bacteria 1928
147 Ga0209588_1024325 3300027671 Bacteria 1912
148 Ga0268266_10001726 3300028379 Bacteria 25029
149 Ga0307511_10001904 3300030521 Bacteria 21903
150 Ga0373937_0033352 3300036401 Bacteria 4675
151 Ga0395898_0127898 3300037466 Bacteria 2434
152 Ga0395905_0261927 3300037471 Bacteria 1614
153 Ga0451577_0066809 3300042876 Bacteria 3206
154 Ga0453684_0045541 3300044712 Bacteria 5849
155 Ga0466959_0005230 3300045049 Bacteria 8859
156 Ga0451576_0023842 3300045051 Bacteria 6619
157 Ga0495606_0146304 3300046507 Bacteria 1391
158 Ga0495645_0364261 3300046543 Unclassified 928
159 Ga0496112_0100363 3300048915 Unclassified 2864
160 nmdc:mga04h51_82576_c1 3300050495 Bacteria 1143
161 nmdc:mga05p37_12682_c1 3300050507 Bacteria 10070
162 nmdc:mga05p37_390987_c1 3300050507 Bacteria 1626
163 nmdc:mga05p37_901322_c1 3300050507 Unclassified 953
164 nmdc:mga09592_925_c1 3300050508 Bacteria 23011
165 nmdc:mga0qj67_54861_c1 3300050509 Bacteria 3156
166 nmdc:mga06r32_7179_c1 3300050510 Bacteria 10042
167 nmdc:mga0n895_11426_c1 3300050512 Bacteria 7921
168 nmdc:mga0n895_256243_c1 3300050512 Bacteria 1775
169 nmdc:mga0n895_3326_c1 3300050512 Bacteria 12920
170 nmdc:mga0rr50_167326_c1 3300050513 Bacteria 1788
171 nmdc:mga0rr50_229195_c1 3300050513 Bacteria 1536
172 nmdc:mga0rr50_31706_c1 3300050513 Bacteria 3758
173 nmdc:mga08x19_22373_c1 3300050514 Bacteria 3915
174 nmdc:mga0a205_356343_c1 3300050515 Bacteria 1330
175 nmdc:mga0a205_5075_c1 3300050515 Bacteria 11837
176 2904695104 2904690495 Bacteria 9412302
177 2908756882 2908756301 Bacteria 8864324
178 2935783621 2935777560 Bacteria 8077691
179 2941533316 2941531003 Bacteria 7653939
180 8016609865 8016603502 Bacteria 8731218
181 8016615075 8016613128 Bacteria 8794220
182 8019545503 8019538911 Bacteria 7872763
183 nmdc:mga05p37_9708_c1
184 rootH1_10026500
185 JGI25160J50197_1006968
186 Ga0055543_1021282
187 Ga0065165_1006510
188 Ga0070666_10167635
189 Ga0070680_100082028
190 Ga0070709_10028901
191 Ga0070709_10069721
192 Ga0070709_10501573
193 Ga0070714_100315946
194 Ga0070714_100393343
195 Ga0070713_100087236
196 Ga0070713_100131984
197 Ga0070713_100177933
198 Ga0070713_100288411
199 Ga0070711_100005281
200 Ga0070711_100062131
201 Ga0070711_100167503
202 Ga0070711_100197334
203 Ga0070705_100176894
204 Ga0070708_100002580
205 Ga0070708_100003330
206 Ga0070708_100008129
207 Ga0070708_100011558
208 Ga0070708_100147185
209 Ga0070708_100193934
210 Ga0070708_100565657
211 Ga0070681_10047121
212 Ga0070706_100000618
213 Ga0070706_100009663
214 Ga0070706_100038846
215 Ga0070706_100097038
216 Ga0070706_100099511
217 Ga0070706_100155391
218 Ga0070706_100783804
219 Ga0070707_100003412
220 Ga0070707_100024764
221 Ga0070707_100162050
222 Ga0070707_100188725
223 Ga0070707_100238960
224 Ga0070707_100250966
225 Ga0070698_100033752
226 Ga0070698_100038659
227 Ga0070698_100087146
228 Ga0070698_100236141
229 Ga0070699_100031224
230 Ga0070699_100048612
231 Ga0070699_100129771
232 Ga0070699_100140082
233 Ga0070699_100598534
234 Ga0070679_100025862
235 Ga0070697_100003789
236 Ga0070697_100014523
237 Ga0070697_100027522
238 Ga0070697_100036682
239 Ga0070697_100130937
240 Ga0070697_100327864
241 Ga0070697_100666108
242 Ga0070695_100353520
243 Ga0070696_100391899
244 Ga0068858_100060778
245 Ga0081455_10021417
246 Ga0081455_10069092
247 Ga0081540_1000019
248 Ga0081540_1010112
249 Ga0081540_1094945
250 Ga0070717_10025909
251 Ga0070717_10066604
252 Ga0070717_10419384
253 Ga0075364_10096495
254 Ga0070716_100071877
255 Ga0070716_100212373
256 Ga0070712_100021272
257 Ga0070712_100043928
258 Ga0070712_100072634
259 Ga0070712_100305561
260 Ga0075428_100016979
261 Ga0075431_100033496
262 Ga0075433_10006835
263 Ga0075434_100007837
264 Ga0075434_100016233
265 Ga0075434_100039940
266 Ga0075434_100323197
267 Ga0075429_100015760
268 Ga0075436_100272021
269 Ga0075436_100375930
270 Ga0075436_100376733
271 Ga0075435_100096432
272 Ga0099794_10017527
273 Ga0099794_10071512
274 Ga0099794_10093736
275 Ga0114129_10153961
276 Ga0114129_10542302
277 Ga0105242_10351154
278 Ga0105238_10147013
279 Ga0105249_10015613
280 Ga0157378_10015322
281 Ga0163162_10305338
282 Ga0157372_10455022
283 Ga0157376_10335995
284 Ga0207426_1006988
285 Ga0207426_1022706
286 Ga0207692_10185788
287 Ga0207680_10195371
288 Ga0207647_10236802
289 Ga0207685_10021687
290 Ga0207685_10138581
291 Ga0207699_10025188
292 Ga0207699_10537808
293 Ga0207684_10001285
294 Ga0207684_10033557
295 Ga0207684_10033800
296 Ga0207684_10059578
297 Ga0207684_10312659
298 Ga0207684_10549885
299 Ga0207693_10018731
300 Ga0207693_10071417
301 Ga0207693_10215427
302 Ga0207693_10243940
303 Ga0207693_10263346
304 Ga0207693_10371607
305 Ga0207663_10003188
306 Ga0207663_10069261
307 Ga0207663_10106421
308 Ga0207663_10365938
309 Ga0207652_10141604
310 Ga0207646_10000353
311 Ga0207646_10114899
312 Ga0207646_10130873
313 Ga0207646_10215600
314 Ga0207646_10381019
315 Ga0207646_10676391
316 Ga0207700_10075135
317 Ga0207700_10102195
318 Ga0207700_10340970
319 Ga0207664_10290344
320 Ga0207665_10017537
321 Ga0207665_10021153
322 Ga0207665_10086325
323 Ga0207665_10092431
324 Ga0207665_10103621
325 Ga0207665_10155628
326 Ga0207665_10435408
327 Ga0207712_10205483
328 Ga0207703_10167749
329 Ga0209588_1024325
330 Ga0268266_10001726
331 Ga0307511_10001904
332 Ga0373937_0033352
333 Ga0395898_0127898
334 Ga0395905_0261927
335 Ga0451577_0066809
336 Ga0453684_0045541
337 Ga0466959_0005230
338 Ga0451576_0023842
339 Ga0495606_0146304
340 Ga0495645_0364261
341 Ga0496112_0100363
342 nmdc:mga04h51_82576_c1
343 nmdc:mga05p37_12682_c1
344 nmdc:mga05p37_390987_c1
345 nmdc:mga05p37_901322_c1
346 nmdc:mga09592_925_c1
347 nmdc:mga0qj67_54861_c1
348 nmdc:mga06r32_7179_c1
349 nmdc:mga0n895_11426_c1
350 nmdc:mga0n895_256243_c1
351 nmdc:mga0n895_3326_c1
352 nmdc:mga0rr50_167326_c1
353 nmdc:mga0rr50_229195_c1
354 nmdc:mga0rr50_31706_c1
355 nmdc:mga08x19_22373_c1
356 nmdc:mga0a205_356343_c1
357 nmdc:mga0a205_5075_c1
358 2904695104
359 2908756882
360 2935783621
361 2941533316
362 8016609865
363 8016615075
364 8019545503

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01730

UreF

UreF

78

228

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6jc4-assembly2.cif.gz_C crystal structure of the urease accessory protein uref from klebsiella pneumoniae 0.8748 11 212
3cxn-assembly2.cif.gz_C structure of the urease accessory protein uref from helicobacter pylori 0.8552 13 210
6jc4-assembly2.cif.gz_C crystal structure of the urease accessory protein uref from klebsiella pneumoniae 0.8549 11 212
3o1q-assembly2.cif.gz_B native crystal structure of helicobacter pylori urease accessory protein uref 0.8522 13 210
3o1q-assembly1.cif.gz_A native crystal structure of helicobacter pylori urease accessory protein uref 0.8351 13 210
ID Description Score Start End Superfamily
af_Q2G2K7_3_207_1.10.4190.10 Mainly Alpha;Orthogonal Bundle;Urease accessory protein UreF;Urease accessory protein UreF 0.9028 11 211 1.10.4190.10
af_Q2G2K7_3_207_1.10.4190.10 Mainly Alpha;Orthogonal Bundle;Urease accessory protein UreF;Urease accessory protein UreF 0.8823 11 211 1.10.4190.10
3cxnC00 Mainly Alpha;Orthogonal Bundle;Urease accessory protein UreF;Urease accessory protein UreF 0.8566 13 210 1.10.4190.10
3cxnC00 Mainly Alpha;Orthogonal Bundle;Urease accessory protein UreF;Urease accessory protein UreF 0.8054 13 210 1.10.4190.10
3sf5C00 Mainly Alpha;Orthogonal Bundle;Urease accessory protein UreF;Urease accessory protein UreF 0.7988 4 232 1.10.4190.10
ID Description Score Start End GO Terms
AF-A0A2V6SR27-F1-model_v4 Uncharacterized protein 0.9084 34 203 GO:0016151
AF-A0A160UTC1-F1-model_v4 deleted 0.9071 40 236
AF-F4PG09-F1-model_v4 Urease accessory protein UreE 0.9033 24 203 GO:0005737
GO:0006457
GO:0016151
GO:0019627
GO:0065003
AF-P42876-F1-model_v4 Urease accessory protein UreF 0.9026 11 193 GO:0005737
GO:0016151
AF-A0A2N3BRD3-F1-model_v4 Urease accessory protein UreF 0.9008 11 207 GO:0016151

Map