F279582
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 182 | 121 | 364 | 508 |
Family's Representative Sequence
| Representative Sequence | 3300042876|Ga0451577_0004516|Ga0451577_0004516_2458_4170 |
| Length | 570 |
| Sequence | MTDRFVNTRHAAVISSTSPQGGEVVYDVAGSAPLDGSSVGVTGHDFSSQDASRNDQRVIPIVPLAREEALQGDGQGCHAGRDELMQAAQAGANSAVIQRYAADYPVDPKRGPHDQPQSMCPAFGSLRVGLRMRRTATILSGSACCVYGLTFTSHFYGARRSVGYVPFNSETLVTGKLFEDIREAVYKTADPAKYDTIVVTNLCVPSASGVPLRLLPKEINGVRIIGIDVPGFGVPTHAEAKDVLAGAMLAYARGEAEAGPVAAPRTGVSKLPTVTLLGEMFPADPVGIGMMLEPLGLAAGPVVPTREWRELYAALDCAVVAAIHPFYTASIREFDAAGRSVVGSAPVGHDGTAAWLDAIGRATGVAQAKVDAVKNKLLPGIRGALAAKPIKGRITLSGYEGSELLVARLLIESGADVRYVGTACPRTPWSAADREWLEAHGAKVQFRASLEDDIAAFDEFEPDLAIGTTPVVQHAKSRATPSLYFTNLISARPLMGPAGAGSLAQVINAALAAKGRFDQMKAFFGQVGEGATGGVFHDTQHVPQDRPEFRSYYRRQLEKAAKKRKAEEMI |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 2 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 3 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 4 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 7 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 8 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 9 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 10 | 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Metagenome | Rhizosphere |
| 11 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 12 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 13 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 14 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 15 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 16 | 3300025230 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 17 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 18 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 19 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 20 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 21 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 22 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 23 | 3300027526 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 24 | 3300027695 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 25 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 26 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 27 | 3300028563 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG | Metagenome | Rhizosphere |
| 28 | 3300028573 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG | Metagenome | Rhizosphere |
| 29 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 30 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 31 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 32 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 33 | 3300031239 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG | Metagenome | Rhizosphere |
| 34 | 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Metagenome | Rhizosphere |
| 35 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 36 | 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Metagenome | Rhizosphere |
| 37 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 38 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 39 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 40 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 41 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 42 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 43 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 44 | 3300031691 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA | Metagenome | Rhizosphere |
| 45 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 46 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 47 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 48 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 49 | 3300031733 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 | Metagenome | Rhizosphere |
| 50 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 51 | 3300032137 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC | Metagenome | Rhizosphere |
| 52 | 3300032139 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB | Metagenome | Rhizosphere |
| 53 | 3300033524 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 54 | 3300033527 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 55 | 3300033528 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 56 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 57 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 58 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 59 | 3300037588 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA | Metagenome | Rhizosphere |
| 60 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 61 | 3300039062 | Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 | Metagenome | Unclassified |
| 62 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 63 | 3300039438 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 | Metagenome | Rhizosphere |
| 64 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 65 | 3300039453 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 | Metagenome | Rhizosphere |
| 66 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 67 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 68 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 69 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 70 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 71 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 72 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 73 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 74 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 75 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 76 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 77 | 3300053080 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere | Metagenome | Endosphere |
| 78 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 79 | 3300053119 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere | Metagenome | Endosphere |
| 80 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 81 | 3300053142 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere | Metagenome | Endosphere |
| 82 | 3300053147 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere | Metagenome | Endosphere |
| 83 | 3300053151 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere | Metagenome | Endosphere |
| 84 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 85 | 3300053739 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere | Metagenome | Endosphere |
| 86 | 2512875024 | |||
| 87 | 2545555834 | Methylobacterium sp. WSM2598 | Isolate | Nodule |
| 88 | 2643221585 | Pelomonas sp. Root662 | Isolate | Unclassified |
| 89 | 2643221653 | Rhizobium sp. Root1240 | Isolate | Unclassified |
| 90 | 2643221654 | Rhizobacter sp. Root404 | Isolate | Unclassified |
| 91 | 2643221656 | Pelomonas sp. Root405 | Isolate | Unclassified |
| 92 | 2643221660 | Methylibium sp. Root1272 | Isolate | Unclassified |
| 93 | 2643221719 | Rhizobium sp. Root274 | Isolate | Unclassified |
| 94 | 2738541275 | Novosphingobium sp. GV027 | Isolate | Unclassified |
| 95 | 2738541301 | Novosphingobium sp. GV079 | Isolate | Unclassified |
| 96 | 2738541304 | Novosphingobium sp. GV061 | Isolate | Unclassified |
| 97 | 2738543022 | Novosphingobium sp. GV055 | Isolate | Unclassified |
| 98 | 2738543032 | Methylobacterium sp. GV104 | Isolate | Unclassified |
| 99 | 2738543033 | Novosphingobium sp. GV064 | Isolate | Unclassified |
| 100 | 2818991272 | Rhizobium sp. SLBN-4 | Isolate | Unclassified |
| 101 | 2829745981 | Methylorubrum rhodinum DSM 2163 | Isolate | Rhizosphere |
| 102 | 2837678835 | Jiella endophytica CBS5Q-3 | Isolate | Unclassified |
| 103 | 2842698319 | Methylobacterium sp. R-72139 | Isolate | Unclassified |
| 104 | 2844315083 | Bradyrhizobium guangzhouense CCBAU 51670 | Isolate | Unclassified |
| 105 | 2854681122 | Luteovulum sphaeroides SCJ | Isolate | Unclassified |
| 106 | 2861691609 | Methylorubrum thiocyanatum DSM 11490 | Isolate | Rhizosphere |
| 107 | 2888388044 | Bradyrhizobium cosmicum 58S1 | Isolate | Unclassified |
| 108 | 2889306138 | Methylobacterium sp. PvR107 | Isolate | Rhizosphere |
| 109 | 2894772417 | Roseomonas oryzicola KCTC 22478 | Isolate | Rhizosphere |
| 110 | 2902330777 | Methylobacterium sp. 2A | Isolate | Unclassified |
| 111 | 2902405164 | Methylobacterium sp. P1-11 | Isolate | Unclassified |
| 112 | 2903727486 | Bradyrhizobium guangzhouense CCBAU 53424 | Isolate | Unclassified |
| 113 | 2906602504 | Bradyrhizobium guangzhouense CCBAU 53426 | Isolate | Unclassified |
| 114 | 2919679072 | Pseudotabrizicola sp. 4114 | Isolate | Unclassified |
| 115 | 2928100450 | Novosphingobium sp. 1529 | Isolate | Rhizosphere |
| 116 | 2928125067 | Methylobacterium sp. 1973 | Isolate | Unclassified |
| 117 | 2928959182 | Novosphingobium capsulatum 1057 | Isolate | Unclassified |
| 118 | 3003665799 | Methylobacterium aquaticum BG2 | Isolate | Unclassified |
| 119 | 641522639 | Methylobacterium sp. 4-46 | Isolate | Nodule |
| 120 | 8005246636 | Rhizobium wuzhouense W44 | Isolate | Rhizosphere |
| 121 | 8045864390 | Aurantimonas endophytica KCTC 52296 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 77.47 |
| Metatranscriptomes | 2.75 |
| Isolates | 19.78 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 8.79 |
| Nodule | 1.65 |
| Rhizoplane | 0 |
| Rhizosphere | 67.03 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0451577_0004516 | 3300042876 | Bacteria | 14655 |
| 2 | JGI25160J50197_1005833 | 3300003354 | Bacteria | 5069 |
| 3 | Ga0065165_1000694 | 3300005262 | Bacteria | 48071 |
| 4 | Ga0070658_10004801 | 3300005327 | Bacteria | 11004 |
| 5 | Ga0070665_100009298 | 3300005548 | Bacteria | 9946 |
| 6 | Ga0070665_100009524 | 3300005548 | Bacteria | 9825 |
| 7 | Ga0068856_100114011 | 3300005614 | Bacteria | 2702 |
| 8 | Ga0068852_100088904 | 3300005616 | Bacteria | 2760 |
| 9 | Ga0068860_100010873 | 3300005843 | Bacteria | 8977 |
| 10 | Ga0068862_100008472 | 3300005844 | Bacteria | 8505 |
| 11 | Ga0081540_1017144 | 3300005983 | Bacteria | 4496 |
| 12 | Ga0097621_100089243 | 3300006237 | Bacteria | 2577 |
| 13 | Ga0105240_10014435 | 3300009093 | Bacteria | 10786 |
| 14 | Ga0163163_10078455 | 3300014325 | Bacteria | 3299 |
| 15 | Ga0213876_10012490 | 3300021384 | Bacteria | 4521 |
| 16 | Ga0213875_10024551 | 3300021388 | Bacteria | 2874 |
| 17 | Ga0209563_101237 | 3300025230 | Bacteria | 7046 |
| 18 | Ga0209758_1000557 | 3300025297 | Bacteria | 58827 |
| 19 | Ga0207426_1000712 | 3300025302 | Bacteria | 38841 |
| 20 | Ga0207426_1019921 | 3300025302 | Bacteria | 2339 |
| 21 | Ga0207705_10004127 | 3300025909 | Bacteria | 11009 |
| 22 | Ga0207695_10037138 | 3300025913 | Bacteria | 5257 |
| 23 | Ga0207668_10057555 | 3300025972 | Bacteria | 2712 |
| 24 | Ga0207698_10070529 | 3300026142 | Bacteria | 2769 |
| 25 | Ga0209968_1000461 | 3300027526 | Bacteria | 6514 |
| 26 | Ga0209966_1000177 | 3300027695 | Bacteria | 26013 |
| 27 | Ga0268266_10000539 | 3300028379 | Bacteria | 52742 |
| 28 | Ga0268265_10009128 | 3300028380 | Bacteria | 6703 |
| 29 | Ga0265319_1003520 | 3300028563 | Bacteria | 8134 |
| 30 | Ga0265334_10000294 | 3300028573 | Bacteria | 27911 |
| 31 | Ga0265318_10000555 | 3300028577 | Bacteria | 26355 |
| 32 | Ga0265338_10014634 | 3300028800 | Bacteria | 8704 |
| 33 | Ga0265330_10000756 | 3300031235 | Bacteria | 20349 |
| 34 | Ga0265332_10002442 | 3300031238 | Bacteria | 9475 |
| 35 | Ga0265332_10033942 | 3300031238 | Bacteria | 2220 |
| 36 | Ga0265328_10000030 | 3300031239 | Bacteria | 109595 |
| 37 | Ga0265328_10002622 | 3300031239 | Bacteria | 8031 |
| 38 | Ga0265328_10010427 | 3300031239 | Bacteria | 3741 |
| 39 | Ga0265320_10025261 | 3300031240 | Bacteria | 3125 |
| 40 | Ga0265325_10008633 | 3300031241 | Bacteria | 6002 |
| 41 | Ga0265325_10019873 | 3300031241 | Bacteria | 3708 |
| 42 | Ga0265329_10024622 | 3300031242 | Bacteria | 1996 |
| 43 | Ga0265340_10000960 | 3300031247 | Bacteria | 16413 |
| 44 | Ga0265340_10025426 | 3300031247 | Bacteria | 2998 |
| 45 | Ga0265340_10034051 | 3300031247 | Bacteria | 2534 |
| 46 | Ga0265339_10004934 | 3300031249 | Bacteria | 8990 |
| 47 | Ga0265339_10039188 | 3300031249 | Bacteria | 2640 |
| 48 | Ga0265331_10001233 | 3300031250 | Bacteria | 19228 |
| 49 | Ga0265331_10003057 | 3300031250 | Bacteria | 10981 |
| 50 | Ga0265331_10004445 | 3300031250 | Bacteria | 8758 |
| 51 | Ga0265327_10000613 | 3300031251 | Bacteria | 58852 |
| 52 | Ga0265327_10004695 | 3300031251 | Bacteria | 11950 |
| 53 | Ga0265316_10005010 | 3300031344 | Bacteria | 13004 |
| 54 | Ga0265316_10026734 | 3300031344 | Bacteria | 4794 |
| 55 | Ga0265316_10083450 | 3300031344 | Bacteria | 2448 |
| 56 | Ga0265313_10006752 | 3300031595 | Bacteria | 8025 |
| 57 | Ga0316575_10006729 | 3300031665 | Bacteria | 4148 |
| 58 | Ga0316579_10005765 | 3300031691 | Bacteria | 5018 |
| 59 | Ga0265314_10001747 | 3300031711 | Bacteria | 23530 |
| 60 | Ga0265314_10003681 | 3300031711 | Bacteria | 14706 |
| 61 | Ga0265342_10000087 | 3300031712 | Bacteria | 100045 |
| 62 | Ga0265342_10001283 | 3300031712 | Bacteria | 23626 |
| 63 | Ga0265342_10027573 | 3300031712 | Bacteria | 3547 |
| 64 | Ga0316576_10000316 | 3300031727 | Bacteria | 21453 |
| 65 | Ga0316576_10013015 | 3300031727 | Bacteria | 5512 |
| 66 | Ga0316576_10026364 | 3300031727 | Bacteria | 4078 |
| 67 | Ga0316576_10068390 | 3300031727 | Bacteria | 2616 |
| 68 | Ga0316578_10000010 | 3300031728 | Bacteria | 44911 |
| 69 | Ga0316578_10000103 | 3300031728 | Bacteria | 20042 |
| 70 | Ga0316578_10014860 | 3300031728 | Bacteria | 4173 |
| 71 | Ga0316578_10054853 | 3300031728 | Bacteria | 2338 |
| 72 | Ga0316577_10000190 | 3300031733 | Bacteria | 20350 |
| 73 | Ga0316577_10000493 | 3300031733 | Bacteria | 15617 |
| 74 | Ga0316577_10024630 | 3300031733 | Bacteria | 3346 |
| 75 | Ga0316577_10034469 | 3300031733 | Bacteria | 2828 |
| 76 | Ga0307406_10044664 | 3300031901 | Bacteria | 2778 |
| 77 | Ga0316585_10000054 | 3300032137 | Bacteria | 18607 |
| 78 | Ga0316585_10000307 | 3300032137 | Bacteria | 10900 |
| 79 | Ga0316580_10000006 | 3300032139 | Bacteria | 32316 |
| 80 | Ga0316580_10001161 | 3300032139 | Bacteria | 6679 |
| 81 | Ga0316592_1001244 | 3300033524 | Bacteria | 4029 |
| 82 | Ga0316592_1003255 | 3300033524 | Bacteria | 2905 |
| 83 | Ga0316586_1000579 | 3300033527 | Bacteria | 3625 |
| 84 | Ga0316588_1000008 | 3300033528 | Bacteria | 13213 |
| 85 | Ga0316588_1001489 | 3300033528 | Bacteria | 3861 |
| 86 | Ga0316574_0002607 | 3300035398 | Bacteria | 9084 |
| 87 | Ga0316574_0006354 | 3300035398 | Bacteria | 6381 |
| 88 | Ga0316574_0022744 | 3300035398 | Bacteria | 3736 |
| 89 | Ga0316574_0070000 | 3300035398 | Bacteria | 2215 |
| 90 | Ga0316582_0001114 | 3300036647 | Bacteria | 11386 |
| 91 | Ga0316582_0054592 | 3300036647 | Bacteria | 2544 |
| 92 | Ga0316584_0001453 | 3300036712 | Bacteria | 14202 |
| 93 | Ga0316584_0002294 | 3300036712 | Bacteria | 12038 |
| 94 | Ga0316584_0003617 | 3300036712 | Bacteria | 10114 |
| 95 | Ga0316584_0012466 | 3300036712 | Bacteria | 5994 |
| 96 | Ga0316584_0017491 | 3300036712 | Bacteria | 5156 |
| 97 | Ga0316584_0039149 | 3300036712 | Bacteria | 3529 |
| 98 | Ga0316581_0000420 | 3300037588 | Bacteria | 7984 |
| 99 | Ga0316581_0019633 | 3300037588 | Bacteria | 1973 |
| 100 | Ga0436364_0328296 | 3300037853 | Bacteria | 143298 |
| 101 | Ga0400483_002808 | 3300039062 | Bacteria | 1812 |
| 102 | Ga0400483_009931 | 3300039062 | Bacteria | 2832 |
| 103 | Ga0400483_061097 | 3300039062 | Bacteria | 2463 |
| 104 | Ga0400483_093617 | 3300039062 | Bacteria | 11973 |
| 105 | Ga0400483_175012 | 3300039062 | Bacteria | 2302 |
| 106 | Ga0400483_187041 | 3300039062 | Bacteria | 1971 |
| 107 | Ga0400483_236410 | 3300039062 | Bacteria | 5227 |
| 108 | Ga0436365_1159328 | 3300039437 | Bacteria | 27033 |
| 109 | Ga0436360_0108004 | 3300039438 | Bacteria | 3036 |
| 110 | Ga0436360_0605759 | 3300039438 | Bacteria | 2298 |
| 111 | Ga0436363_1273610 | 3300039450 | Bacteria | 3394 |
| 112 | Ga0436362_0078983 | 3300039453 | Bacteria | 2204 |
| 113 | Ga0451577_0000001 | 3300042876 | Bacteria | 2461803 |
| 114 | Ga0451577_0003136 | 3300042876 | Bacteria | 18631 |
| 115 | Ga0451577_0007153 | 3300042876 | Bacteria | 11006 |
| 116 | Ga0451577_0030027 | 3300042876 | Bacteria | 4911 |
| 117 | Ga0451577_0038782 | 3300042876 | Bacteria | 4283 |
| 118 | Ga0451577_0098498 | 3300042876 | Bacteria | 2611 |
| 119 | Ga0451577_0134478 | 3300042876 | Bacteria | 2219 |
| 120 | Ga0453684_0024534 | 3300044712 | Bacteria | 8809 |
| 121 | Ga0453684_0194195 | 3300044712 | Bacteria | 2372 |
| 122 | Ga0451576_0001928 | 3300045051 | Bacteria | 33191 |
| 123 | Ga0451576_0001939 | 3300045051 | Bacteria | 33033 |
| 124 | Ga0451576_0010324 | 3300045051 | Bacteria | 10723 |
| 125 | Ga0451576_0016556 | 3300045051 | Bacteria | 8131 |
| 126 | Ga0451576_0070972 | 3300045051 | Bacteria | 3625 |
| 127 | Ga0495606_0029562 | 3300046507 | Bacteria | 3843 |
| 128 | Ga0495686_0017248 | 3300047472 | Bacteria | 4868 |
| 129 | Ga0496121_0013557 | 3300048924 | Bacteria | 8742 |
| 130 | Ga0496126_0120841 | 3300048929 | Bacteria | 2272 |
| 131 | Ga0501070_0002177 | 3300049586 | Bacteria | 17230 |
| 132 | Ga0501074_0088461 | 3300049590 | Bacteria | 2218 |
| 133 | Ga0501080_0006685 | 3300049742 | Bacteria | 10379 |
| 134 | Ga0501035_0000398 | 3300049822 | Bacteria | 49830 |
| 135 | Ga0501044_0010584 | 3300049823 | Bacteria | 10006 |
| 136 | Ga0501044_0027218 | 3300049823 | Bacteria | 6044 |
| 137 | Ga0500635_0000034 | 3300053080 | Bacteria | 96919 |
| 138 | Ga0500641_0001247 | 3300053096 | Bacteria | 9047 |
| 139 | Ga0500641_0002183 | 3300053096 | Bacteria | 6933 |
| 140 | Ga0500595_000084 | 3300053119 | Bacteria | 66292 |
| 141 | Ga0500559_0000109 | 3300053136 | Bacteria | 65246 |
| 142 | Ga0500577_0000114 | 3300053142 | Bacteria | 19725 |
| 143 | Ga0500589_001983 | 3300053147 | Bacteria | 6569 |
| 144 | Ga0500604_0013420 | 3300053151 | Bacteria | 2220 |
| 145 | Ga0500622_0017772 | 3300053156 | Bacteria | 3782 |
| 146 | Ga0500587_000283 | 3300053739 | Bacteria | 5628 |
| 147 | 2512963778 | 2512875024 | Bacteria | 7195110 |
| 148 | 2545674154 | 2545555834 | Bacteria | 8130841 |
| 149 | 2643937274 | 2643221585 | Bacteria | 5812563 |
| 150 | 2644299534 | 2643221653 | Bacteria | 4569637 |
| 151 | 2644301539 | 2643221654 | Bacteria | 5273570 |
| 152 | 2644318439 | 2643221656 | Bacteria | 5809961 |
| 153 | 2644338238 | 2643221660 | Bacteria | 4208257 |
| 154 | 2644657762 | 2643221719 | Bacteria | 4568197 |
| 155 | 2738708823 | 2738541275 | Bacteria | 4830863 |
| 156 | 2738847248 | 2738541301 | Bacteria | 4834102 |
| 157 | 2738862977 | 2738541304 | Bacteria | 4833665 |
| 158 | 2739295495 | 2738543022 | Bacteria | 4835059 |
| 159 | 2739353298 | 2738543032 | Bacteria | 5115625 |
| 160 | 2739357173 | 2738543033 | Bacteria | 4833336 |
| 161 | 2819244982 | 2818991272 | Bacteria | 4622173 |
| 162 | 2829748408 | 2829745981 | Bacteria | 5406054 |
| 163 | 2837681544 | 2837678835 | Bacteria | 5252418 |
| 164 | 2842700551 | 2842698319 | Bacteria | 5190321 |
| 165 | 2844315611 | 2844315083 | Bacteria | 8138177 |
| 166 | 2854685458 | 2854681122 | Bacteria | 4548679 |
| 167 | 2861693241 | 2861691609 | Bacteria | 5628931 |
| 168 | 2888389560 | 2888388044 | Bacteria | 7304136 |
| 169 | 2889307697 | 2889306138 | Bacteria | 6358934 |
| 170 | 2894773965 | 2894772417 | Bacteria | 5305674 |
| 171 | 2902333378 | 2902330777 | Bacteria | 6395352 |
| 172 | 2902407036 | 2902405164 | Bacteria | 6784948 |
| 173 | 2903732695 | 2903727486 | Bacteria | 8281579 |
| 174 | 2906605463 | 2906602504 | Bacteria | 8295279 |
| 175 | 2919681519 | 2919679072 | Bacteria | 4629602 |
| 176 | 2928102422 | 2928100450 | Bacteria | 4837635 |
| 177 | 2928127216 | 2928125067 | Bacteria | 5937560 |
| 178 | 2928961074 | 2928959182 | Bacteria | 4725774 |
| 179 | 3003666917 | 3003665799 | Bacteria | 7279786 |
| 180 | 641643869 | 641522639 | Bacteria | 7737025 |
| 181 | 8005250645 | 8005246636 | Bacteria | 4933972 |
| 182 | 8045864980 | 8045864390 | Bacteria | 5043873 |
| 183 | Ga0451577_0004516 | |||
| 184 | JGI25160J50197_1005833 | |||
| 185 | Ga0065165_1000694 | |||
| 186 | Ga0070658_10004801 | |||
| 187 | Ga0070665_100009298 | |||
| 188 | Ga0070665_100009524 | |||
| 189 | Ga0068856_100114011 | |||
| 190 | Ga0068852_100088904 | |||
| 191 | Ga0068860_100010873 | |||
| 192 | Ga0068862_100008472 | |||
| 193 | Ga0081540_1017144 | |||
| 194 | Ga0097621_100089243 | |||
| 195 | Ga0105240_10014435 | |||
| 196 | Ga0163163_10078455 | |||
| 197 | Ga0213876_10012490 | |||
| 198 | Ga0213875_10024551 | |||
| 199 | Ga0209563_101237 | |||
| 200 | Ga0209758_1000557 | |||
| 201 | Ga0207426_1000712 | |||
| 202 | Ga0207426_1019921 | |||
| 203 | Ga0207705_10004127 | |||
| 204 | Ga0207695_10037138 | |||
| 205 | Ga0207668_10057555 | |||
| 206 | Ga0207698_10070529 | |||
| 207 | Ga0209968_1000461 | |||
| 208 | Ga0209966_1000177 | |||
| 209 | Ga0268266_10000539 | |||
| 210 | Ga0268265_10009128 | |||
| 211 | Ga0265319_1003520 | |||
| 212 | Ga0265334_10000294 | |||
| 213 | Ga0265318_10000555 | |||
| 214 | Ga0265338_10014634 | |||
| 215 | Ga0265330_10000756 | |||
| 216 | Ga0265332_10002442 | |||
| 217 | Ga0265332_10033942 | |||
| 218 | Ga0265328_10000030 | |||
| 219 | Ga0265328_10002622 | |||
| 220 | Ga0265328_10010427 | |||
| 221 | Ga0265320_10025261 | |||
| 222 | Ga0265325_10008633 | |||
| 223 | Ga0265325_10019873 | |||
| 224 | Ga0265329_10024622 | |||
| 225 | Ga0265340_10000960 | |||
| 226 | Ga0265340_10025426 | |||
| 227 | Ga0265340_10034051 | |||
| 228 | Ga0265339_10004934 | |||
| 229 | Ga0265339_10039188 | |||
| 230 | Ga0265331_10001233 | |||
| 231 | Ga0265331_10003057 | |||
| 232 | Ga0265331_10004445 | |||
| 233 | Ga0265327_10000613 | |||
| 234 | Ga0265327_10004695 | |||
| 235 | Ga0265316_10005010 | |||
| 236 | Ga0265316_10026734 | |||
| 237 | Ga0265316_10083450 | |||
| 238 | Ga0265313_10006752 | |||
| 239 | Ga0316575_10006729 | |||
| 240 | Ga0316579_10005765 | |||
| 241 | Ga0265314_10001747 | |||
| 242 | Ga0265314_10003681 | |||
| 243 | Ga0265342_10000087 | |||
| 244 | Ga0265342_10001283 | |||
| 245 | Ga0265342_10027573 | |||
| 246 | Ga0316576_10000316 | |||
| 247 | Ga0316576_10013015 | |||
| 248 | Ga0316576_10026364 | |||
| 249 | Ga0316576_10068390 | |||
| 250 | Ga0316578_10000010 | |||
| 251 | Ga0316578_10000103 | |||
| 252 | Ga0316578_10014860 | |||
| 253 | Ga0316578_10054853 | |||
| 254 | Ga0316577_10000190 | |||
| 255 | Ga0316577_10000493 | |||
| 256 | Ga0316577_10024630 | |||
| 257 | Ga0316577_10034469 | |||
| 258 | Ga0307406_10044664 | |||
| 259 | Ga0316585_10000054 | |||
| 260 | Ga0316585_10000307 | |||
| 261 | Ga0316580_10000006 | |||
| 262 | Ga0316580_10001161 | |||
| 263 | Ga0316592_1001244 | |||
| 264 | Ga0316592_1003255 | |||
| 265 | Ga0316586_1000579 | |||
| 266 | Ga0316588_1000008 | |||
| 267 | Ga0316588_1001489 | |||
| 268 | Ga0316574_0002607 | |||
| 269 | Ga0316574_0006354 | |||
| 270 | Ga0316574_0022744 | |||
| 271 | Ga0316574_0070000 | |||
| 272 | Ga0316582_0001114 | |||
| 273 | Ga0316582_0054592 | |||
| 274 | Ga0316584_0001453 | |||
| 275 | Ga0316584_0002294 | |||
| 276 | Ga0316584_0003617 | |||
| 277 | Ga0316584_0012466 | |||
| 278 | Ga0316584_0017491 | |||
| 279 | Ga0316584_0039149 | |||
| 280 | Ga0316581_0000420 | |||
| 281 | Ga0316581_0019633 | |||
| 282 | Ga0436364_0328296 | |||
| 283 | Ga0400483_002808 | |||
| 284 | Ga0400483_009931 | |||
| 285 | Ga0400483_061097 | |||
| 286 | Ga0400483_093617 | |||
| 287 | Ga0400483_175012 | |||
| 288 | Ga0400483_187041 | |||
| 289 | Ga0400483_236410 | |||
| 290 | Ga0436365_1159328 | |||
| 291 | Ga0436360_0108004 | |||
| 292 | Ga0436360_0605759 | |||
| 293 | Ga0436363_1273610 | |||
| 294 | Ga0436362_0078983 | |||
| 295 | Ga0451577_0000001 | |||
| 296 | Ga0451577_0003136 | |||
| 297 | Ga0451577_0007153 | |||
| 298 | Ga0451577_0030027 | |||
| 299 | Ga0451577_0038782 | |||
| 300 | Ga0451577_0098498 | |||
| 301 | Ga0451577_0134478 | |||
| 302 | Ga0453684_0024534 | |||
| 303 | Ga0453684_0194195 | |||
| 304 | Ga0451576_0001928 | |||
| 305 | Ga0451576_0001939 | |||
| 306 | Ga0451576_0010324 | |||
| 307 | Ga0451576_0016556 | |||
| 308 | Ga0451576_0070972 | |||
| 309 | Ga0495606_0029562 | |||
| 310 | Ga0495686_0017248 | |||
| 311 | Ga0496121_0013557 | |||
| 312 | Ga0496126_0120841 | |||
| 313 | Ga0501070_0002177 | |||
| 314 | Ga0501074_0088461 | |||
| 315 | Ga0501080_0006685 | |||
| 316 | Ga0501035_0000398 | |||
| 317 | Ga0501044_0010584 | |||
| 318 | Ga0501044_0027218 | |||
| 319 | Ga0500635_0000034 | |||
| 320 | Ga0500641_0001247 | |||
| 321 | Ga0500641_0002183 | |||
| 322 | Ga0500595_000084 | |||
| 323 | Ga0500559_0000109 | |||
| 324 | Ga0500577_0000114 | |||
| 325 | Ga0500589_001983 | |||
| 326 | Ga0500604_0013420 | |||
| 327 | Ga0500622_0017772 | |||
| 328 | Ga0500587_000283 | |||
| 329 | 2512963778 | |||
| 330 | 2545674154 | |||
| 331 | 2643937274 | |||
| 332 | 2644299534 | |||
| 333 | 2644301539 | |||
| 334 | 2644318439 | |||
| 335 | 2644338238 | |||
| 336 | 2644657762 | |||
| 337 | 2738708823 | |||
| 338 | 2738847248 | |||
| 339 | 2738862977 | |||
| 340 | 2739295495 | |||
| 341 | 2739353298 | |||
| 342 | 2739357173 | |||
| 343 | 2819244982 | |||
| 344 | 2829748408 | |||
| 345 | 2837681544 | |||
| 346 | 2842700551 | |||
| 347 | 2844315611 | |||
| 348 | 2854685458 | |||
| 349 | 2861693241 | |||
| 350 | 2888389560 | |||
| 351 | 2889307697 | |||
| 352 | 2894773965 | |||
| 353 | 2902333378 | |||
| 354 | 2902407036 | |||
| 355 | 2903732695 | |||
| 356 | 2906605463 | |||
| 357 | 2919681519 | |||
| 358 | 2928102422 | |||
| 359 | 2928127216 | |||
| 360 | 2928961074 | |||
| 361 | 3003666917 | |||
| 362 | 641643869 | |||
| 363 | 8005250645 | |||
| 364 | 8045864980 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2ynm-assembly1.cif.gz_C-2 | structure of the adpxalf3-stabilized transition state of the nitrogenase-like dark-operative protochlorophyllide oxidoreductase complex from prochlorococcus marinus with its substrate protochlorophyllide a | 0.8044 | 76 | 484 |
| 3aeq-assembly1.cif.gz_A | structure of the light-independent protochlorophyllide reductase catalyzing a key reduction for greening in the dark | 0.8031 | 78 | 486 |
| 1fp4-assembly1.cif.gz_A | crystal structure of the alpha-h195q mutant of nitrogenase | 0.7885 | 78 | 485 |
| 3pdi-assembly1.cif.gz_C | precursor bound nifen | 0.786 | 77 | 487 |
| 6o7s-assembly1.cif.gz_C | nitrogenase mofep mutant s188a from azotobacter vinelandii in the indigo carmine oxidized state | 0.7852 | 76 | 485 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4wesB04 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain | 0.8285 | 361 | 453 | 3.40.50.1980 |
| 5kohB04 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain | 0.8148 | 361 | 452 | 3.40.50.1980 |
| 5n6yB01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain | 0.8032 | 88 | 221 | 3.40.50.1980 |
| 3aesA02 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain | 0.7915 | 90 | 215 | 3.40.50.1980 |
| 3aesC01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain | 0.7889 | 350 | 484 | 3.40.50.1980 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A257PCE7-F1-model_v4 | Chlorophyllide a reductase subunit Y | 0.9837 | 139 | 492 |
GO:0015979
GO:0016020 GO:0016731 GO:0030494 |
| AF-A0A7C4CBQ6-F1-model_v4 | Chlorophyllide a reductase subunit Y (EC 1.3.7.15) | 0.9747 | 46 | 492 |
GO:0015979
GO:0016020 GO:0016731 GO:0030494 |
| AF-A0A520IJL0-F1-model_v4 | Chlorophyllide a reductase subunit Y (EC 1.3.7.15) | 0.9731 | 69 | 481 |
GO:0015979
GO:0016020 GO:0016731 GO:0030494 |
| AF-F7S550-F1-model_v4 | BchY | 0.9713 | 337 | 492 |
GO:0015979
GO:0015995 GO:0016491 |
| AF-A0A2M8VB38-F1-model_v4 | deleted | 0.9671 | 300 | 513 |
|