F279277

General Info

Members Datasets Scaffolds Average Seq Length
182 135 364 315

Family's Representative Sequence

Representative Sequence 3300026075|Ga0207708_10089194|Ga0207708_100891941
Length 355
Sequence MTSPDGLSGRVDRRTFLSAIAATLPAGMLGSKIQEAAIPIIDTHIHLFDQTRPQGAPYAGGRPPGSAAPTLPSYPPRYRALARPLGIVGAIVVEASPWVEDNLWVLEVAQTDTMLVGVIGNLEPDKPEFGEYLDRYRKNSLFLGIRYGNLWGRDLTKQAENATFVAGVKRLADAGLVFETANPRIALLEAIVRITDKIPDVRVVLDHLPGLIPTAAEQKAYEGLLAELGKRPKIFCKLSSVVRPIDGQVSFDVATYRDRLDRLVGTFGDDRVIFGTDWPNSDGVAPPDQIVAVIKQYVAAKPAAFQEKYFWRNSIPAYRWIRRAPRPASPTAPSGRRAGRPSACVRATPGFIAPT

Samples

Sample ID Description Type Environment
1 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
44 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
58 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
59 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
60 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
61 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
93 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
94 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
95 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
96 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
97 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
99 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
100 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
101 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
102 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
103 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
104 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
105 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
106 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
107 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
108 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
109 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
110 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
111 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
112 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
113 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
114 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
115 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
116 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
117 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
118 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
119 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
120 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
121 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
122 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
127 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
128 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
131 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
132 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
133 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
134 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.8
Metatranscriptomes 2.2
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.1
Nodule 0
Rhizoplane 0
Rhizosphere 96.7
Stem 0
Stem Tuber 0
Unclassified 28.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207708_10089194 3300026075 Unclassified 2376
2 Ga0058863_11155914 3300004799 Bacteria 1472
3 Ga0065707_10009222 3300005295 Unclassified 2478
4 Ga0070658_10042788 3300005327 Bacteria 3658
5 Ga0070683_100000019 3300005329 Bacteria 192076
6 Ga0070683_100358781 3300005329 Bacteria 1388
7 Ga0070680_100000363 3300005336 Bacteria 30603
8 Ga0068868_100035718 3300005338 Bacteria 3843
9 Ga0070669_100314239 3300005353 Bacteria 1264
10 Ga0070671_100133044 3300005355 Unclassified 2095
11 Ga0070671_100310980 3300005355 Bacteria 1342
12 Ga0070714_100025439 3300005435 Bacteria 4885
13 Ga0070713_100004679 3300005436 Bacteria 9238
14 Ga0070700_100160596 3300005441 Bacteria 1547
15 Ga0070678_100331501 3300005456 Unclassified 1303
16 Ga0070706_100059441 3300005467 Bacteria 3527
17 Ga0070698_100269961 3300005471 Unclassified 1633
18 Ga0070679_100110724 3300005530 Unclassified 2732
19 Ga0070679_100297760 3300005530 Bacteria 1564
20 Ga0070684_100000003 3300005535 Bacteria 248527
21 Ga0068853_100132552 3300005539 Bacteria 2232
22 Ga0070665_100008766 3300005548 Bacteria 10237
23 Ga0068855_100009535 3300005563 Bacteria 11723
24 Ga0068855_100276286 3300005563 Bacteria 1867
25 Ga0068857_100023692 3300005577 Bacteria 5404
26 Ga0068854_100074134 3300005578 Bacteria 2496
27 Ga0068856_100050366 3300005614 Bacteria 4106
28 Ga0068852_100136268 3300005616 Bacteria 2267
29 Ga0068852_100182961 3300005616 Bacteria 1972
30 Ga0068859_100074221 3300005617 Unclassified 3440
31 Ga0068866_10079812 3300005718 Bacteria 1754
32 Ga0068863_100108846 3300005841 Bacteria 2638
33 Ga0068858_100045923 3300005842 Unclassified 4050
34 Ga0068862_100030068 3300005844 Unclassified 4577
35 Ga0070717_10002690 3300006028 Bacteria 12527
36 Ga0070717_10153477 3300006028 Bacteria 1994
37 Ga0097621_100000204 3300006237 Bacteria 38704
38 Ga0097621_100190244 3300006237 Bacteria 1777
39 Ga0068871_100008016 3300006358 Bacteria 7583
40 Ga0068871_100046312 3300006358 Bacteria 3503
41 Ga0068871_100194299 3300006358 Bacteria 1749
42 Ga0068871_100304444 3300006358 Bacteria 1400
43 Ga0075428_100029047 3300006844 Bacteria 6119
44 Ga0075430_100003278 3300006846 Bacteria 13573
45 Ga0075431_100074356 3300006847 Bacteria 3506
46 Ga0075431_100137847 3300006847 Unclassified 2516
47 Ga0075429_100061437 3300006880 Bacteria 3273
48 Ga0075436_100007328 3300006914 Bacteria 7540
49 Ga0097620_100074226 3300006931 Unclassified 3440
50 Ga0111539_10095312 3300009094 Unclassified 3495
51 Ga0105245_10000406 3300009098 Bacteria 39988
52 Ga0105245_10009568 3300009098 Bacteria 8454
53 Ga0114129_10143968 3300009147 Plasmid 3266
54 Ga0114129_10247125 3300009147 Unclassified 2396
55 Ga0105243_10121671 3300009148 Unclassified 2201
56 Ga0105241_10009610 3300009174 Bacteria 7109
57 Ga0105241_10035553 3300009174 Unclassified 3747
58 Ga0105241_10252655 3300009174 Unclassified 1495
59 Ga0105242_10004540 3300009176 Bacteria 10771
60 Ga0105242_10064195 3300009176 Bacteria 3026
61 Ga0105242_10158625 3300009176 Unclassified 1978
62 Ga0105248_10317547 3300009177 Unclassified 1754
63 Ga0105237_10072164 3300009545 Bacteria 3446
64 Ga0105238_10084648 3300009551 Unclassified 3161
65 Ga0105238_10146439 3300009551 Bacteria 2338
66 Ga0105249_10036657 3300009553 Bacteria 4450
67 Ga0105239_10013772 3300010375 Bacteria 8977
68 Ga0105239_10052639 3300010375 Bacteria 4465
69 Ga0105239_10135647 3300010375 Bacteria 2740
70 Ga0157370_10038637 3300013104 Unclassified 4617
71 Ga0157369_10006654 3300013105 Bacteria 13355
72 Ga0157369_10136113 3300013105 Bacteria 2601
73 Ga0157369_10236279 3300013105 Bacteria 1910
74 Ga0157378_10003757 3300013297 Bacteria 13459
75 Ga0157378_10022482 3300013297 Bacteria 5550
76 Ga0163162_10005633 3300013306 Bacteria 12101
77 Ga0163162_10158085 3300013306 Bacteria 2387
78 Ga0157375_10124217 3300013308 Unclassified 2694
79 Ga0163163_10000946 3300014325 Bacteria 24654
80 Ga0163163_10162916 3300014325 Bacteria 2276
81 Ga0163163_10266983 3300014325 Bacteria 1762
82 Ga0163163_10617953 3300014325 Unclassified 1147
83 Ga0157380_10035065 3300014326 Unclassified 3874
84 Ga0157379_10514558 3300014968 Unclassified 1110
85 Ga0157376_10597598 3300014969 Bacteria 1098
86 Ga0197907_10945727 3300020069 Unclassified 1316
87 Ga0206351_10409509 3300020077 Bacteria 1519
88 Ga0224712_10000690 3300022467 Bacteria 6960
89 Ga0207426_1000002 3300025302 Bacteria 1249660
90 Ga0207680_10136283 3300025903 Unclassified 1623
91 Ga0207699_10232720 3300025906 Bacteria 1262
92 Ga0207705_10114290 3300025909 Bacteria 1997
93 Ga0207684_10176846 3300025910 Bacteria 1840
94 Ga0207654_10038516 3300025911 Bacteria 2683
95 Ga0207654_10097114 3300025911 Bacteria 1808
96 Ga0207695_10041022 3300025913 Bacteria 4956
97 Ga0207671_10078715 3300025914 Unclassified 2469
98 Ga0207671_10083911 3300025914 Bacteria 2392
99 Ga0207660_10004303 3300025917 Bacteria 9290
100 Ga0207657_10006697 3300025919 Bacteria 11909
101 Ga0207681_10165806 3300025923 Unclassified 1670
102 Ga0207694_10013656 3300025924 Bacteria 6121
103 Ga0207694_10045040 3300025924 Unclassified 3408
104 Ga0207687_10002554 3300025927 Bacteria 12364
105 Ga0207687_10009997 3300025927 Bacteria 6207
106 Ga0207700_10017559 3300025928 Bacteria 4784
107 Ga0207664_10013421 3300025929 Bacteria 5880
108 Ga0207644_10232989 3300025931 Bacteria 1464
109 Ga0207686_10029552 3300025934 Unclassified 3234
110 Ga0207669_10294757 3300025937 Bacteria 1230
111 Ga0207711_10153900 3300025941 Unclassified 2077
112 Ga0207711_10171386 3300025941 Unclassified 1969
113 Ga0207661_10000019 3300025944 Bacteria 235900
114 Ga0207667_10049003 3300025949 Unclassified 4464
115 Ga0207640_10146940 3300025981 Bacteria 1726
116 Ga0207677_10043364 3300026023 Bacteria 2990
117 Ga0207703_10064015 3300026035 Bacteria 3017
118 Ga0207703_10212347 3300026035 Bacteria 1726
119 Ga0207702_10153728 3300026078 Bacteria 2095
120 Ga0207641_10030822 3300026088 Bacteria 4444
121 Ga0207648_10143535 3300026089 Bacteria 2105
122 Ga0207674_10021533 3300026116 Bacteria 6940
123 Ga0207683_10376353 3300026121 Unclassified 1305
124 Ga0268266_10097966 3300028379 Bacteria 2580
125 Ga0265316_10004361 3300031344 Bacteria 14107
126 Ga0265316_10211126 3300031344 Unclassified 1435
127 Ga0307408_100449250 3300031548 Bacteria 1118
128 Ga0373934_0065204 3300035086 Bacteria 1454
129 Ga0373956_0054752 3300035119 Unclassified 1798
130 Ga0373927_0281352 3300035695 Unclassified 1094
131 Ga0373937_0020539 3300036401 Bacteria 5920
132 Ga0395898_0054224 3300037466 Unclassified 3913
133 Ga0395905_0642901 3300037471 Unclassified 963
134 Ga0436364_0234128 3300037853 Unclassified 4539
135 Ga0436364_1315668 3300037853 Bacteria 3917
136 Ga0436364_1329609 3300037853 Bacteria 7262
137 Ga0436363_1532048 3300039450 Bacteria 1311
138 Ga0451576_0105710 3300045051 Bacteria 2929
139 Ga0451576_0343999 3300045051 Bacteria 1562
140 Ga0466967_0082657 3300045976 Bacteria 2903
141 Ga0495629_0189220 3300046459 Unclassified 1425
142 Ga0495580_0235850 3300046472 Unclassified 1255
143 Ga0495664_0003049 3300046477 Bacteria 9071
144 Ga0495664_0025190 3300046477 Bacteria 3463
145 Ga0495594_0108877 3300046499 Unclassified 1562
146 Ga0495608_0107981 3300046511 Unclassified 1790
147 Ga0495630_0016289 3300046517 Bacteria 5430
148 Ga0495652_0016210 3300046529 Bacteria 6665
149 Ga0495587_0005231 3300046536 Bacteria 8480
150 Ga0495587_0027268 3300046536 Bacteria 3479
151 Ga0495599_0011159 3300046678 Bacteria 5515
152 Ga0495623_0114137 3300046679 Unclassified 1634
153 Ga0495613_0046947 3300046689 Bacteria 3191
154 Ga0495600_0022510 3300046809 Bacteria 4047
155 Ga0495604_0123359 3300047317 Unclassified 1872
156 Ga0495674_0022185 3300047319 Bacteria 5857
157 Ga0495674_0266836 3300047319 Unclassified 1405
158 Ga0495680_0018262 3300047322 Bacteria 5960
159 Ga0495675_0033499 3300047444 Bacteria 3279
160 Ga0495675_0097789 3300047444 Unclassified 1839
161 Ga0495684_0041309 3300047471 Unclassified 3534
162 Ga0495684_0171988 3300047471 Unclassified 1610
163 Ga0495602_0027277 3300048088 Bacteria 5491
164 Ga0501033_0009975 3300049570 Bacteria 7292
165 Ga0501037_0027238 3300049573 Bacteria 4222
166 Ga0501046_0000821 3300049580 Bacteria 30313
167 Ga0501047_0188658 3300049581 Unclassified 1926
168 Ga0501071_0108492 3300049587 Bacteria 2051
169 Ga0501076_0022878 3300049592 Bacteria 4809
170 Ga0501083_0019732 3300049744 Bacteria 4693
171 Ga0501083_0025809 3300049744 Bacteria 4067
172 Ga0501044_0002081 3300049823 Bacteria 23050
173 Ga0501044_0175434 3300049823 Bacteria 2112
174 nmdc:mga05p37_454877_c1 3300050507 Bacteria 1481
175 nmdc:mga09592_31171_c1 3300050508 Bacteria 4441
176 nmdc:mga06r32_10568_c1 3300050510 Bacteria 8322
177 nmdc:mga06r32_66781_c1 3300050510 Unclassified 3471
178 nmdc:mga06r32_7426_c1 3300050510 Bacteria 9862
179 nmdc:mga08x19_2973_c1 3300050514 Bacteria 10179
180 Ga0500556_0000128 3300053104 Bacteria 65099
181 Ga0501082_0000708 3300060353 Bacteria 29299
182 Ga0501082_0140879 3300060353 Bacteria 2093
183 Ga0207708_10089194
184 Ga0058863_11155914
185 Ga0065707_10009222
186 Ga0070658_10042788
187 Ga0070683_100000019
188 Ga0070683_100358781
189 Ga0070680_100000363
190 Ga0068868_100035718
191 Ga0070669_100314239
192 Ga0070671_100133044
193 Ga0070671_100310980
194 Ga0070714_100025439
195 Ga0070713_100004679
196 Ga0070700_100160596
197 Ga0070678_100331501
198 Ga0070706_100059441
199 Ga0070698_100269961
200 Ga0070679_100110724
201 Ga0070679_100297760
202 Ga0070684_100000003
203 Ga0068853_100132552
204 Ga0070665_100008766
205 Ga0068855_100009535
206 Ga0068855_100276286
207 Ga0068857_100023692
208 Ga0068854_100074134
209 Ga0068856_100050366
210 Ga0068852_100136268
211 Ga0068852_100182961
212 Ga0068859_100074221
213 Ga0068866_10079812
214 Ga0068863_100108846
215 Ga0068858_100045923
216 Ga0068862_100030068
217 Ga0070717_10002690
218 Ga0070717_10153477
219 Ga0097621_100000204
220 Ga0097621_100190244
221 Ga0068871_100008016
222 Ga0068871_100046312
223 Ga0068871_100194299
224 Ga0068871_100304444
225 Ga0075428_100029047
226 Ga0075430_100003278
227 Ga0075431_100074356
228 Ga0075431_100137847
229 Ga0075429_100061437
230 Ga0075436_100007328
231 Ga0097620_100074226
232 Ga0111539_10095312
233 Ga0105245_10000406
234 Ga0105245_10009568
235 Ga0114129_10143968
236 Ga0114129_10247125
237 Ga0105243_10121671
238 Ga0105241_10009610
239 Ga0105241_10035553
240 Ga0105241_10252655
241 Ga0105242_10004540
242 Ga0105242_10064195
243 Ga0105242_10158625
244 Ga0105248_10317547
245 Ga0105237_10072164
246 Ga0105238_10084648
247 Ga0105238_10146439
248 Ga0105249_10036657
249 Ga0105239_10013772
250 Ga0105239_10052639
251 Ga0105239_10135647
252 Ga0157370_10038637
253 Ga0157369_10006654
254 Ga0157369_10136113
255 Ga0157369_10236279
256 Ga0157378_10003757
257 Ga0157378_10022482
258 Ga0163162_10005633
259 Ga0163162_10158085
260 Ga0157375_10124217
261 Ga0163163_10000946
262 Ga0163163_10162916
263 Ga0163163_10266983
264 Ga0163163_10617953
265 Ga0157380_10035065
266 Ga0157379_10514558
267 Ga0157376_10597598
268 Ga0197907_10945727
269 Ga0206351_10409509
270 Ga0224712_10000690
271 Ga0207426_1000002
272 Ga0207680_10136283
273 Ga0207699_10232720
274 Ga0207705_10114290
275 Ga0207684_10176846
276 Ga0207654_10038516
277 Ga0207654_10097114
278 Ga0207695_10041022
279 Ga0207671_10078715
280 Ga0207671_10083911
281 Ga0207660_10004303
282 Ga0207657_10006697
283 Ga0207681_10165806
284 Ga0207694_10013656
285 Ga0207694_10045040
286 Ga0207687_10002554
287 Ga0207687_10009997
288 Ga0207700_10017559
289 Ga0207664_10013421
290 Ga0207644_10232989
291 Ga0207686_10029552
292 Ga0207669_10294757
293 Ga0207711_10153900
294 Ga0207711_10171386
295 Ga0207661_10000019
296 Ga0207667_10049003
297 Ga0207640_10146940
298 Ga0207677_10043364
299 Ga0207703_10064015
300 Ga0207703_10212347
301 Ga0207702_10153728
302 Ga0207641_10030822
303 Ga0207648_10143535
304 Ga0207674_10021533
305 Ga0207683_10376353
306 Ga0268266_10097966
307 Ga0265316_10004361
308 Ga0265316_10211126
309 Ga0307408_100449250
310 Ga0373934_0065204
311 Ga0373956_0054752
312 Ga0373927_0281352
313 Ga0373937_0020539
314 Ga0395898_0054224
315 Ga0395905_0642901
316 Ga0436364_0234128
317 Ga0436364_1315668
318 Ga0436364_1329609
319 Ga0436363_1532048
320 Ga0451576_0105710
321 Ga0451576_0343999
322 Ga0466967_0082657
323 Ga0495629_0189220
324 Ga0495580_0235850
325 Ga0495664_0003049
326 Ga0495664_0025190
327 Ga0495594_0108877
328 Ga0495608_0107981
329 Ga0495630_0016289
330 Ga0495652_0016210
331 Ga0495587_0005231
332 Ga0495587_0027268
333 Ga0495599_0011159
334 Ga0495623_0114137
335 Ga0495613_0046947
336 Ga0495600_0022510
337 Ga0495604_0123359
338 Ga0495674_0022185
339 Ga0495674_0266836
340 Ga0495680_0018262
341 Ga0495675_0033499
342 Ga0495675_0097789
343 Ga0495684_0041309
344 Ga0495684_0171988
345 Ga0495602_0027277
346 Ga0501033_0009975
347 Ga0501037_0027238
348 Ga0501046_0000821
349 Ga0501047_0188658
350 Ga0501071_0108492
351 Ga0501076_0022878
352 Ga0501083_0019732
353 Ga0501083_0025809
354 Ga0501044_0002081
355 Ga0501044_0175434
356 nmdc:mga05p37_454877_c1
357 nmdc:mga09592_31171_c1
358 nmdc:mga06r32_10568_c1
359 nmdc:mga06r32_66781_c1
360 nmdc:mga06r32_7426_c1
361 nmdc:mga08x19_2973_c1
362 Ga0500556_0000128
363 Ga0501082_0000708
364 Ga0501082_0140879

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04909

Amidohydro_2

Amidohydrolase

41

320

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4dnm-assembly1.cif.gz_A crystal structure of an amidohydrolase (cog3618) from burkholderia multivorans (target efi-500235) with bound hepes, space group p3221 0.8329 26 295
4do7-assembly2.cif.gz_B crystal structure of an amidohydrolase (cog3618) from burkholderia multivorans (target efi-500235) with bound zn, space group c2 0.8273 26 295
4do7-assembly2.cif.gz_B crystal structure of an amidohydrolase (cog3618) from burkholderia multivorans (target efi-500235) with bound zn, space group c2 0.7879 26 295
4dnm-assembly1.cif.gz_A crystal structure of an amidohydrolase (cog3618) from burkholderia multivorans (target efi-500235) with bound hepes, space group p3221 0.7851 26 295
4i6k-assembly1.cif.gz_A crystal structure of probable 2-pyrone-4,6-dicarboxylic acid hydrolase abaye1769 (target efi-505029) from acinetobacter baumannii with citric acid bound 0.7645 28 293
ID Description Score Start End Superfamily
4do7B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8273 26 295 3.20.20.140
4do7B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.7879 26 295 3.20.20.140
af_A0A0P0W9I9_79_364_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.7652 28 293 3.20.20.140
4i6kA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.7645 28 293 3.20.20.140
4i6kA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.7543 28 293 3.20.20.140
ID Description Score Start End GO Terms
AF-A0A7X2TVX4-F1-model_v4 Amidohydrolase 0.9668 60 305 GO:0016787
AF-A0A2V8V3G4-F1-model_v4 Amidohydrolase 0.9543 93 304 GO:0016787
AF-A0A7Y8LIT0-F1-model_v4 Amidohydrolase family protein 0.9519 25 304 GO:0016787
AF-A0A7C5V070-F1-model_v4 Amidohydrolase 0.9373 136 302 GO:0016787
AF-A0A833U9T3-F1-model_v4 Amidohydrolase-related domain-containing protein 0.9309 28 295 GO:0016787

Map