F279218

General Info

Members Datasets Scaffolds Average Seq Length
182 137 129 219

Family's Representative Sequence

Representative Sequence 3300025272|Ga0209455_1001957|Ga0209455_10019577
Length 244
Sequence MTDAAEPRSVADPAARTSSEAGPSGAAGRVVLIAGATSASGEAVARALVDAGARVLAVGTSQEKLDALAAAVPGVDVRACDLADQDAVAELAMRIHLKFGDLDGLVHLVGGWRGGGGIAGQSDEDWDFFDRAFRTLRNTTRVFYDDLVASPAGRLAVVSSTAVDKPLAGGANYAAAKAAGDAWTRAVAQGFAKQAPQSAATVFVVKSLDGLEARLGEEVVALWSADAEAVNGRRIPLTPERMEQ

Samples

Sample ID Description Type Environment
1 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221553 Microbacterium sp. Root553 Isolate Unclassified
4 2643221566 Microbacterium sp. Root166 Isolate Unclassified
5 2643221575 Microbacterium sp. Root61 Isolate Unclassified
6 2643221597 Microbacterium sp. Root180 Isolate Unclassified
7 2643221616 Leifsonia sp. Root227 Isolate Unclassified
8 2643221630 Microbacterium sp. Root322 Isolate Unclassified
9 2643221649 Leifsonia sp. Root4 Isolate Unclassified
10 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
11 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
12 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
13 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
14 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
15 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
16 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
17 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
18 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
19 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
20 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
21 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
22 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
23 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
24 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
25 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
26 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
27 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
28 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
29 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
30 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
31 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
32 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
33 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
34 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
35 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
36 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
37 2919069694 Microbacterium sp. 1154 Isolate Unclassified
38 2919395869 Microbacterium resistens 2980 Isolate Unclassified
39 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
40 2920879853 Kocuria salina CV6 Isolate Unclassified
41 2928153084 Leifsonia sp. 563 Isolate Unclassified
42 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
43 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
44 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
45 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
46 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
47 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
48 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
49 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
50 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
51 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
52 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
53 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
54 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
55 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
56 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
57 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
58 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
59 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
60 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
61 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
62 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
63 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
64 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
65 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
66 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
67 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
68 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
69 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
70 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
71 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
72 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
73 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
74 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
75 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
81 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
82 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
83 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
86 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
93 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
94 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
95 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
96 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
97 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
98 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
99 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
100 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
101 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
102 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
103 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
104 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
105 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
106 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
107 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
108 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
109 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
110 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
111 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
112 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
113 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
114 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
115 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
116 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
117 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
118 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
119 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
120 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
121 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
122 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
123 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
124 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
125 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
126 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
127 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
128 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
131 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
132 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
133 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
134 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
135 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
136 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
137 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 70.33
Metatranscriptomes 0.55
Isolates 29.12

Biome Distribution

Category Percentage (%)
Aerial Root 0.55
Bulb 0
Endosphere 15.93
Nodule 0
Rhizoplane 2.2
Rhizosphere 40.66
Stem 0
Stem Tuber 0.55
Unclassified 40.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1001162 3300002738 Bacteria 10087
2 JGI25165J46597_1000005 3300003214 Bacteria 623702
3 rootH2_10122806 3300003320 Bacteria 1017
4 rootL2_10191453 3300003322 Bacteria 1032
5 Ga0006562J51391_1036807 3300003578 Bacteria 5510
6 Ga0055533_1000037 3300003756 Bacteria 255573
7 Ga0055532_1003701 3300003758 Bacteria 2513
8 Ga0055525_1000299 3300003759 Bacteria 42555
9 Ga0055527_1000062 3300003760 Bacteria 89642
10 Ga0055542_1000143 3300003762 Bacteria 89651
11 Ga0055529_1000171 3300003763 Bacteria 89621
12 Ga0055541_1006922 3300003841 Bacteria 1894
13 Ga0070682_100383635 3300005337 Bacteria 1058
14 Ga0070660_100458442 3300005339 Bacteria 1058
15 Ga0070675_100521431 3300005354 Bacteria 1072
16 Ga0070667_100333913 3300005367 Bacteria 1370
17 Ga0070672_100120582 3300005543 Bacteria 2146
18 Ga0068852_100711178 3300005616 Bacteria 1015
19 Ga0075365_10025839 3300006038 Bacteria 3721
20 Ga0075364_10007772 3300006051 Bacteria 6388
21 Ga0075364_10084365 3300006051 Bacteria 2103
22 Ga0105244_10019409 3300009036 Bacteria 3795
23 Ga0105244_10022034 3300009036 Bacteria 3513
24 Ga0105243_10017358 3300009148 Bacteria 5440
25 Ga0105243_10314837 3300009148 Bacteria 1424
26 Ga0157369_10002346 3300013105 Bacteria 22770
27 Ga0157369_10071193 3300013105 Bacteria 3734
28 Ga0157369_10616164 3300013105 Bacteria 1120
29 Ga0157369_11207069 3300013105 Bacteria 772
30 Ga0171462_1001 3300013250 Bacteria 1135406
31 Ga0209566_100047 3300025225 Bacteria 243995
32 Ga0209674_100001 3300025226 Bacteria 4013750
33 Ga0209672_100011 3300025228 Bacteria 856297
34 Ga0209147_101807 3300025229 Bacteria 6696
35 Ga0209563_100001 3300025230 Bacteria 4013775
36 Ga0207427_100028 3300025231 Bacteria 388949
37 Ga0209437_100211 3300025233 Bacteria 108544
38 Ga0209646_1000013 3300025246 Bacteria 565830
39 Ga0209646_1000014 3300025246 Bacteria 550484
40 Ga0209677_100001 3300025253 Bacteria 4013787
41 Ga0209148_1000023 3300025254 Bacteria 680511
42 Ga0209233_1000001 3300025261 Bacteria 2992747
43 Ga0209233_1020278 3300025261 Bacteria 1747
44 Ga0209455_1000023 3300025272 Bacteria 680449
45 Ga0209455_1001957 3300025272 Bacteria 8484
46 Ga0207655_1011246 3300025728 Bacteria 5342
47 Ga0207655_1014096 3300025728 Bacteria 4540
48 Ga0207647_10025603 3300025904 Bacteria 3873
49 Ga0207709_10008387 3300025935 Bacteria 5718
50 Ga0207691_10454046 3300025940 Bacteria 1090
51 Ga0207658_10323837 3300025986 Bacteria 1335
52 Ga0307406_10000255 3300031901 Bacteria 32311
53 Ga0307406_10001987 3300031901 Bacteria 11179
54 Ga0307406_10004276 3300031901 Bacteria 7771
55 Ga0307406_10130101 3300031901 Bacteria 1766
56 Ga0307406_10181596 3300031901 Bacteria 1532
57 Ga0307406_10447109 3300031901 Bacteria 1036
58 Ga0307407_10248829 3300031903 Bacteria 1217
59 Ga0307412_10125330 3300031911 Bacteria 1857
60 Ga0307412_10572804 3300031911 Bacteria 952
61 Ga0307409_100210829 3300031995 Bacteria 1746
62 Ga0307409_100403940 3300031995 Bacteria 1306
63 Ga0307416_100194555 3300032002 Bacteria 1917
64 Ga0307416_100497359 3300032002 Bacteria 1283
65 Ga0307416_100774183 3300032002 Bacteria 1054
66 Ga0307414_10197270 3300032004 Bacteria 1634
67 Ga0307411_10235554 3300032005 Bacteria 1430
68 Ga0395899_0012894 3300037312 Bacteria 6399
69 Ga0395899_0019360 3300037312 Bacteria 5172
70 Ga0395900_0002808 3300037418 Bacteria 19018
71 Ga0395898_0000838 3300037466 Bacteria 50932
72 Ga0451791_0817261 3300041451 Bacteria 1210
73 Ga0451853_3759627 3300041512 Bacteria 826
74 Ga0466965_0309958 3300044683 Bacteria 858
75 Ga0466961_0160523 3300044693 Bacteria 1401
76 Ga0466971_0047272 3300044719 Bacteria 1934
77 Ga0466970_0000001 3300044765 Bacteria 252791
78 Ga0466970_0074895 3300044765 Bacteria 1823
79 Ga0466970_0215912 3300044765 Bacteria 1069
80 Ga0466957_0137253 3300044842 Bacteria 1573
81 Ga0466960_0276229 3300044901 Bacteria 940
82 Ga0466959_0042270 3300045049 Bacteria 3361
83 Ga0495627_000468 3300046453 Bacteria 34839
84 Ga0495650_0102139 3300046471 Bacteria 1075
85 Ga0495645_0392791 3300046543 Bacteria 885
86 Ga0495686_0077570 3300047472 Bacteria 2034
87 Ga0495686_0279101 3300047472 Bacteria 929
88 Ga0496101_0055197 3300048904 Bacteria 2869
89 Ga0496104_0226052 3300048907 Bacteria 1784
90 Ga0496105_0152501 3300048908 Bacteria 1899
91 Ga0496116_0126154 3300048919 Bacteria 1470
92 Ga0496117_0000070 3300048920 Bacteria 245027
93 Ga0496117_0002906 3300048920 Bacteria 20726
94 Ga0496117_0019069 3300048920 Bacteria 5651
95 Ga0496117_0032330 3300048920 Bacteria 3977
96 Ga0496117_0053233 3300048920 Bacteria 2845
97 Ga0496117_0140427 3300048920 Bacteria 1448
98 Ga0496119_0008173 3300048922 Bacteria 9261
99 Ga0496119_0010481 3300048922 Bacteria 7794
100 Ga0496119_0148795 3300048922 Bacteria 1257
101 Ga0496120_0002811 3300048923 Bacteria 16821
102 Ga0496120_0008222 3300048923 Bacteria 7634
103 Ga0496121_0217685 3300048924 Bacteria 1348
104 Ga0496122_0013256 3300048925 Bacteria 8082
105 Ga0496122_0015894 3300048925 Bacteria 7165
106 Ga0496122_0043406 3300048925 Bacteria 3523
107 Ga0496122_0056014 3300048925 Bacteria 2944
108 Ga0496123_0009717 3300048926 Bacteria 8616
109 Ga0496123_0021070 3300048926 Bacteria 5079
110 Ga0496124_0003499 3300048927 Bacteria 19129
111 Ga0496125_0000371 3300048928 Bacteria 84352
112 Ga0496125_0008841 3300048928 Bacteria 10470
113 Ga0496125_0020884 3300048928 Bacteria 6128
114 Ga0496125_0031482 3300048928 Bacteria 4728
115 Ga0496125_0105927 3300048928 Bacteria 2054
116 Ga0496126_0048235 3300048929 Bacteria 3894
117 Ga0496126_0049607 3300048929 Bacteria 3831
118 Ga0496126_0049921 3300048929 Bacteria 3817
119 Ga0496126_0086589 3300048929 Bacteria 2761
120 Ga0496126_0427293 3300048929 Bacteria 1070
121 Ga0501032_0401053 3300049569 Bacteria 881
122 Ga0501034_0032916 3300049571 Bacteria 5264
123 Ga0501034_0044704 3300049571 Bacteria 4477
124 Ga0501038_0451173 3300049574 Bacteria 989
125 nmdc:mga00v17_132871_c1 3300050491 Bacteria 1591
126 nmdc:mga00v17_17482_c1 3300050491 Bacteria 4061
127 nmdc:mga0yw44_39033_c1 3300050492 Bacteria 2813
128 Ga0500635_0000138 3300053080 Bacteria 41788
129 Ga0500593_096994 3300053117 Bacteria 1236

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005337 Ga0070682_100383635 Ga0070682_1003836352 161
2 3300044719 Ga0466971_0047272 Ga0466971_0047272_690_1436 161
3 3300005616 Ga0068852_100711178 Ga0068852_1007111782 162
4 3300003758 Ga0055532_1003701 Ga0055532_10037012 165
5 3300003760 Ga0055527_1000062 Ga0055527_10000628 165
6 3300003762 Ga0055542_1000143 Ga0055542_10001438 165
7 3300003763 Ga0055529_1000171 Ga0055529_10001717 165
8 3300025228 Ga0209672_100011 Ga0209672_100011652 165
9 3300025229 Ga0209147_101807 Ga0209147_1018073 165
10 3300025254 Ga0209148_1000023 Ga0209148_1000023490 165
11 3300025261 Ga0209233_1020278 Ga0209233_10202781 165
12 3300025272 Ga0209455_1000023 Ga0209455_1000023490 165
13 3300003322 rootL2_10191453 rootL2_101914532 167
14 3300053117 Ga0500593_096994 Ga0500593_096994_331_1041 167
15 3300013105 Ga0157369_11207069 Ga0157369_112070691 169
16 3300048920 Ga0496117_0019069 Ga0496117_0019069_722_1453 169
17 3300003756 Ga0055533_1000037 Ga0055533_100003789 170
18 3300003759 Ga0055525_1000299 Ga0055525_100029938 170
19 3300003841 Ga0055541_1006922 Ga0055541_10069222 170
20 3300025225 Ga0209566_100047 Ga0209566_10004745 170
21 3300025226 Ga0209674_100001 Ga0209674_1000012238 170
22 3300025230 Ga0209563_100001 Ga0209563_1000012238 170
23 3300025253 Ga0209677_100001 Ga0209677_1000012238 170
24 3300048920 Ga0496117_0053233 Ga0496117_0053233_722_1405 171
25 3300013105 Ga0157369_10071193 Ga0157369_100711933 172
26 3300037312 Ga0395899_0019360 Ga0395899_0019360_2114_2842 172
27 3300037418 Ga0395900_0002808 Ga0395900_0002808_6440_7168 172
28 3300037466 Ga0395898_0000838 Ga0395898_0000838_24717_25445 172
29 3300037312 Ga0395899_0012894 Ga0395899_0012894_28_633 175
30 3300044765 Ga0466970_0215912 Ga0466970_0215912_160_882 176
31 3300044842 Ga0466957_0137253 Ga0466957_0137253_429_1151 176
32 3300045049 Ga0466959_0042270 Ga0466959_0042270_651_1373 176
33 3300013105 Ga0157369_10616164 Ga0157369_106161642 178
34 3300049571 Ga0501034_0032916 Ga0501034_0032916_3402_4043 182
35 3300041512 Ga0451853_3759627 Ga0451853_3759627_61_735 183
36 3300048922 Ga0496119_0148795 Ga0496119_0148795_623_1246 187
37 3300005354 Ga0070675_100521431 Ga0070675_1005214311 188
38 3300047472 Ga0495686_0279101 Ga0495686_0279101_32_694 188
39 3300031901 Ga0307406_10001987 Ga0307406_1000198712 189
40 3300044693 Ga0466961_0160523 Ga0466961_0160523_420_1145 189
41 3300048904 Ga0496101_0055197 Ga0496101_0055197_1635_2309 190
42 3300048908 Ga0496105_0152501 Ga0496105_0152501_640_1314 190
43 3300031911 Ga0307412_10572804 Ga0307412_105728041 191
44 iso_pu_bacteria 2643221616 2644097784 193
45 iso_pu_bacteria 2884763398 2884766961 193
46 3300003214 JGI25165J46597_1000005 JGI25165J46597_100000545 194
47 3300025231 Ga0207427_100028 Ga0207427_100028107 194
48 3300025233 Ga0209437_100211 Ga0209437_10021191 194
49 3300025261 Ga0209233_1000001 Ga0209233_1000001605 194
50 3300048929 Ga0496126_0086589 Ga0496126_0086589_457_1110 194
51 3300003320 rootH2_10122806 rootH2_101228061 195
52 iso_pu_bacteria 2643221575 2643888050 195
53 3300031995 Ga0307409_100403940 Ga0307409_1004039402 196
54 iso_pu_bacteria 2857723135 2857725936 196
55 iso_pu_bacteria 2946041624 2946045279 196
56 iso_pu_bacteria 2946080515 2946083968 196
57 3300048925 Ga0496122_0056014 Ga0496122_0056014_2174_2815 197
58 3300053080 Ga0500635_0000138 Ga0500635_0000138_7156_7860 197
59 iso_pu_bacteria 2643221553 2643786273 197
60 iso_pu_bacteria 2643221724 2644680970 197
61 iso_pu_bacteria 2728369380 2730230597 197
62 iso_pu_bacteria 2747842429 2747954370 197
63 iso_pu_bacteria 2773857763 2774400838 197
64 iso_pu_bacteria 2821268502 2821268936 197
65 iso_pu_bacteria 2919395869 2919397146 197
66 iso_pu_bacteria 8045830549 8045832115 197
67 3300049569 Ga0501032_0401053 Ga0501032_0401053_151_864 198
68 3300049574 Ga0501038_0451173 Ga0501038_0451173_216_929 198
69 iso_pu_bacteria 2857479173 2857480691 198
70 iso_pu_bacteria 2857632687 2857633436 198
71 iso_pu_bacteria 2870801768 2870803720 198
72 iso_pu_bacteria 2870804320 2870805671 198
73 iso_pu_bacteria 2920879853 2920880545 198
74 iso_pu_bacteria 2945968032 2945968821 198
75 3300031901 Ga0307406_10130101 Ga0307406_101301012 199
76 3300031911 Ga0307412_10125330 Ga0307412_101253301 199
77 3300031995 Ga0307409_100210829 Ga0307409_1002108292 199
78 3300032002 Ga0307416_100774183 Ga0307416_1007741832 199
79 iso_pu_bacteria 2643221566 2643847724 199
80 iso_pu_bacteria 2757320536 2758224916 199
81 iso_pu_bacteria 2808606447 2809226191 199
82 iso_pu_bacteria 2811994872 2812322037 199
83 iso_pu_bacteria 2833709550 2833709826 199
84 iso_pu_bacteria 2852632344 2852632449 199
85 iso_pu_bacteria 2852646457 2852647655 199
86 iso_pu_bacteria 8016254467 8016255245 199
87 3300032002 Ga0307416_100497359 Ga0307416_1004973592 200
88 3300048925 Ga0496122_0015894 Ga0496122_0015894_3160_3816 200
89 3300048928 Ga0496125_0000371 Ga0496125_0000371_29024_29698 200
90 3300048928 Ga0496125_0008841 Ga0496125_0008841_4901_5557 200
91 3300048928 Ga0496125_0105927 Ga0496125_0105927_537_1193 200
92 3300048929 Ga0496126_0427293 Ga0496126_0427293_281_937 200
93 3300049571 Ga0501034_0044704 Ga0501034_0044704_2813_3451 200
94 iso_pu_bacteria 2844841374 2844843782 200
95 iso_pu_bacteria 2919055335 2919055768 200
96 iso_pu_bacteria 2919523602 2919525857 200
97 iso_pu_bacteria 2928153084 2928153911 200
98 3300006051 Ga0075364_10007772 Ga0075364_100077727 201
99 3300025272 Ga0209455_1001957 Ga0209455_10019577 201
100 3300031901 Ga0307406_10004276 Ga0307406_100042766 201
101 3300031901 Ga0307406_10181596 Ga0307406_101815962 201
102 3300031903 Ga0307407_10248829 Ga0307407_102488291 201
103 3300032002 Ga0307416_100194555 Ga0307416_1001945552 201
104 3300032004 Ga0307414_10197270 Ga0307414_101972702 201
105 3300032005 Ga0307411_10235554 Ga0307411_102355542 201
106 3300041451 Ga0451791_0817261 Ga0451791_0817261_186_827 201
107 3300044683 Ga0466965_0309958 Ga0466965_0309958_123_836 201
108 3300044901 Ga0466960_0276229 Ga0466960_0276229_184_897 201
109 3300050491 nmdc:mga00v17_17482_c1 nmdc:mga00v17_17482_c1_1043_1684 201
110 iso_pu_bacteria 2808606306 2808628826 201
111 iso_pu_bacteria 2870628048 2870629338 201
112 iso_pu_bacteria 2906799679 2906803232 201
113 iso_pu_bacteria 2974294766 2974294914 201
114 iso_pu_bacteria 2974324384 2974325285 201
115 3300005339 Ga0070660_100458442 Ga0070660_1004584421 202
116 3300025904 Ga0207647_10025603 Ga0207647_100256033 202
117 iso_pu_bacteria 2643221649 2644278310 202
118 iso_pu_bacteria 8004182704 8004184465 202
119 3300009036 Ga0105244_10019409 Ga0105244_100194093 203
120 3300009036 Ga0105244_10022034 Ga0105244_100220342 203
121 3300009148 Ga0105243_10017358 Ga0105243_100173584 203
122 3300009148 Ga0105243_10314837 Ga0105243_103148372 203
123 3300025728 Ga0207655_1011246 Ga0207655_10112463 203
124 3300025728 Ga0207655_1014096 Ga0207655_10140963 203
125 3300025935 Ga0207709_10008387 Ga0207709_100083873 203
126 3300044765 Ga0466970_0074895 Ga0466970_0074895_1099_1788 203
127 3300048920 Ga0496117_0032330 Ga0496117_0032330_1439_2116 203
128 3300048922 Ga0496119_0008173 Ga0496119_0008173_7383_8060 203
129 3300048923 Ga0496120_0002811 Ga0496120_0002811_6072_6749 203
130 iso_pu_bacteria 2643221542 2643732646 203
131 iso_pu_bacteria 2643221630 2644171449 203
132 iso_pu_bacteria 2977264416 2977265450 203
133 3300005367 Ga0070667_100333913 Ga0070667_1003339132 204
134 3300005543 Ga0070672_100120582 Ga0070672_1001205822 204
135 3300006038 Ga0075365_10025839 Ga0075365_100258394 204
136 3300006051 Ga0075364_10084365 Ga0075364_100843652 204
137 3300025940 Ga0207691_10454046 Ga0207691_104540462 204
138 3300025986 Ga0207658_10323837 Ga0207658_103238372 204
139 3300046471 Ga0495650_0102139 Ga0495650_0102139_56_757 204
140 3300046543 Ga0495645_0392791 Ga0495645_0392791_150_818 204
141 3300047472 Ga0495686_0077570 Ga0495686_0077570_1224_1922 204
142 3300050491 nmdc:mga00v17_132871_c1 nmdc:mga00v17_132871_c1_498_1175 204
143 3300050492 nmdc:mga0yw44_39033_c1 nmdc:mga0yw44_39033_c1_1365_2042 204
144 3300048907 Ga0496104_0226052 Ga0496104_0226052_670_1353 205
145 3300048920 Ga0496117_0000070 Ga0496117_0000070_143925_144608 205
146 3300048920 Ga0496117_0002906 Ga0496117_0002906_13447_14100 205
147 3300048922 Ga0496119_0010481 Ga0496119_0010481_852_1535 205
148 3300048923 Ga0496120_0008222 Ga0496120_0008222_2179_2862 205
149 3300048925 Ga0496122_0013256 Ga0496122_0013256_4721_5404 205
150 3300048926 Ga0496123_0009717 Ga0496123_0009717_1330_2013 205
151 3300048927 Ga0496124_0003499 Ga0496124_0003499_5047_5730 205
152 3300048928 Ga0496125_0020884 Ga0496125_0020884_1885_2568 205
153 3300048929 Ga0496126_0048235 Ga0496126_0048235_465_1148 205
154 3300048929 Ga0496126_0049607 Ga0496126_0049607_1553_2206 205
155 3300003578 Ga0006562J51391_1036807 Ga0006562J51391_10368076 206
156 3300013250 Ga0171462_1001 Ga0171462_1001897 206
157 3300048928 Ga0496125_0031482 Ga0496125_0031482_2993_3661 206
158 iso_pu_bacteria 2585428094 2587861720 206
159 iso_pu_bacteria 2773857758 2774378963 206
160 iso_pu_bacteria 2808606368 2808884719 206
161 iso_pu_bacteria 2904509784 2904510425 206
162 iso_pu_bacteria 2908678064 2908678357 206
163 iso_pu_bacteria 2919069694 2919070681 206
164 iso_pu_bacteria 2977228692 2977230254 206
165 iso_pu_bacteria 2977236895 2977239056 206
166 iso_pu_bacteria 2984542743 2984543159 206
167 3300002738 JGI25154J39366_1001162 JGI25154J39366_10011629 207
168 3300013105 Ga0157369_10002346 Ga0157369_100023462 207
169 3300025246 Ga0209646_1000013 Ga0209646_1000013354 207
170 3300025246 Ga0209646_1000014 Ga0209646_1000014147 207
171 3300031901 Ga0307406_10000255 Ga0307406_1000025510 207
172 3300031901 Ga0307406_10447109 Ga0307406_104471091 207
173 3300044765 Ga0466970_0000001 Ga0466970_0000001_104891_105610 207
174 3300046453 Ga0495627_000468 Ga0495627_000468_21754_22413 207
175 3300048919 Ga0496116_0126154 Ga0496116_0126154_202_918 207
176 3300048920 Ga0496117_0140427 Ga0496117_0140427_311_979 207
177 3300048924 Ga0496121_0217685 Ga0496121_0217685_134_850 207
178 3300048925 Ga0496122_0043406 Ga0496122_0043406_227_943 207
179 3300048926 Ga0496123_0021070 Ga0496123_0021070_896_1612 207
180 3300048929 Ga0496126_0049921 Ga0496126_0049921_1415_2080 207
181 iso_pu_bacteria 2643221597 2643994754 207
182 iso_pu_bacteria 2852663356 2852664000 207

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

29

205

0.96

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

35

199

0.93

PF08659

KR

KR domain

29

203

0.85

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

31

203

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
3g1t-assembly1.cif.gz_A-2 crystal structure of short chain dehydrogenase from salmonella enterica subsp. enterica serovar typhi str. ct18 0.8439 6 205
3f5s-assembly1.cif.gz_A crystal structure of putatitve short chain dehydrogenase from shigella flexneri 2a str. 301 0.8397 6 206
3rsh-assembly1.cif.gz_B-2 structure of 3-ketoacyl-(acyl-carrier-protein)reductase (fabg) from vibrio cholerae o1 complexed with nadp+ (space group p62) 0.8394 10 204
2ag5-assembly1.cif.gz_D crystal structure of human dhrs6 0.8391 10 206
4z0t-assembly1.cif.gz_A crystal structure of a putative oxoacyl-(acyl carrier protein) reductase from brucella ovis 0.8384 10 205
ID Description Score Start End Superfamily
af_Q869N3_132_238_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.8775 10 58 3.90.180.10
af_Q2G2D7_8_231_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.8763 10 58 3.90.180.10
af_P76113_12_234_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8679 10 58 3.40.50.2300
af_Q54LY4_9_236_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.8592 10 58 3.90.180.10
af_A0A0P0X9U1_21_128_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8585 7 55 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A3D4PUC9-F1-model_v4 Alcohol dehydrogenase 0.9954 89 206
AF-A0A0F0KK63-F1-model_v4 NADP-dependent 3-hydroxy acid dehydrogenase YdfG (EC 1.1.1.-) 0.9804 16 206 GO:0016491
AF-A0A3D4PUC9-F1-model_v4 Alcohol dehydrogenase 0.9788 89 206
AF-A0A0K2R1F2-F1-model_v4 deleted 0.9742 66 205
AF-A0A7X6EIP4-F1-model_v4 deleted 0.9663 48 204

Feature Viewer

pLDDT pTM Quality
89.26 0.88 High
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Predicted Structure (AlphaFold2)

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