F279143

General Info

Members Datasets Scaffolds Average Seq Length
182 134 364 378

Family's Representative Sequence

Representative Sequence 3300013296|Ga0157374_10022734|Ga0157374_100227343
Length 406
Sequence MSSSAPAGVDKMMAPTDRASTSMIATDPRGSVADDLNNRPLRVAIVGCGKIADSHVHQIQRIKNCEIVAVCDREELMAGQLAERAGVSRFFTSLTDLLSEMNPDVVHITTPPQSHFELGRLCLDAGCHVYIEKPFTLNTAEAKELISLAERNDVKISPGHDDQFRHAARRMRHLIREGYLGGPPVHMESYYCYELDASSSYARALLSDKSHWVRRLPGGLLQNIISHGLARIAEFLTTDNPTVQVSGFVSPALRKAGETDLVDELRVIIREETGLTAYFTFSSQMRPALHQFRIYGPKNSLVLDQDNETVIKLRGGRHKSYLEQFVPPISFAKQYLQNWLYNVSSFAAADFHNKSGMKFLIESFYESIRTNTAPPVSYREIVIVAQLMDSIFSQLESGRALSSDAR

Samples

Sample ID Description Type Environment
1 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
29 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
30 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
34 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
35 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
38 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
44 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
76 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
77 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
78 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
79 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
80 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
81 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
82 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
83 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
84 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
85 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
86 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
87 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
88 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
89 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
90 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
91 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
92 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
93 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
94 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
95 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
96 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
97 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
98 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
99 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
100 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
101 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
102 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
103 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
104 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
105 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
106 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
107 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
108 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
109 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
110 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
111 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
112 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
119 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
120 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
121 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
122 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
123 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
124 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
125 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
126 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
127 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
128 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
129 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
130 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
131 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
132 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
133 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
134 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.35
Stem 0
Stem Tuber 0
Unclassified 25.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157374_10022734 3300013296 Bacteria 5598
2 rootH2_10043812 3300003320 Bacteria 2528
3 Ga0070658_10008710 3300005327 Bacteria 8149
4 Ga0070670_100237906 3300005331 Unclassified 1585
5 Ga0070689_100000051 3300005340 Bacteria 73958
6 Ga0070689_100034283 3300005340 Unclassified 3872
7 Ga0070661_100016032 3300005344 Bacteria 5289
8 Ga0070673_100004423 3300005364 Bacteria 8892
9 Ga0070673_100068344 3300005364 Unclassified 2845
10 Ga0070688_100000243 3300005365 Bacteria 28823
11 Ga0070714_100000975 3300005435 Bacteria 20443
12 Ga0070711_100010889 3300005439 Bacteria 5638
13 Ga0070700_100006403 3300005441 Bacteria 6294
14 Ga0070708_100000676 3300005445 Bacteria 25871
15 Ga0070708_100208938 3300005445 Bacteria 1829
16 Ga0068867_100000941 3300005459 Bacteria 19796
17 Ga0070685_10001116 3300005466 Bacteria 14352
18 Ga0070706_100011497 3300005467 Bacteria 8229
19 Ga0070706_100014290 3300005467 Bacteria 7337
20 Ga0070706_100025621 3300005467 Bacteria 5429
21 Ga0070706_100057905 3300005467 Bacteria 3576
22 Ga0070706_100064328 3300005467 Bacteria 3390
23 Ga0070707_100000347 3300005468 Bacteria 45474
24 Ga0070707_100105317 3300005468 Bacteria 2735
25 Ga0070707_100324116 3300005468 Unclassified 1497
26 Ga0070707_100354278 3300005468 Bacteria 1425
27 Ga0070698_100000422 3300005471 Bacteria 45162
28 Ga0070698_100164422 3300005471 Bacteria 2162
29 Ga0070699_100137457 3300005518 Bacteria 2156
30 Ga0070697_100001001 3300005536 Bacteria 21312
31 Ga0070697_100026084 3300005536 Unclassified 4664
32 Ga0068853_100160431 3300005539 Bacteria 2029
33 Ga0070686_100000074 3300005544 Bacteria 73901
34 Ga0068857_100020075 3300005577 Bacteria 5875
35 Ga0068856_100005246 3300005614 Bacteria 12785
36 Ga0068859_100033225 3300005617 Bacteria 5181
37 Ga0068851_10002315 3300005834 Bacteria 8386
38 Ga0068858_100241553 3300005842 Unclassified 1714
39 Ga0068858_100434031 3300005842 Unclassified 1264
40 Ga0081455_10000468 3300005937 Bacteria 52454
41 Ga0081455_10025308 3300005937 Bacteria 5481
42 Ga0070716_100000090 3300006173 Bacteria 36014
43 Ga0070716_100045596 3300006173 Bacteria 2462
44 Ga0070712_100094419 3300006175 Bacteria 2198
45 Ga0097621_100001006 3300006237 Bacteria 19840
46 Ga0068871_100000933 3300006358 Bacteria 19508
47 Ga0068871_100088255 3300006358 Bacteria 2580
48 Ga0075428_100067681 3300006844 Unclassified 3908
49 Ga0075430_100064803 3300006846 Unclassified 3070
50 Ga0075431_100074517 3300006847 Viruses 3502
51 Ga0075433_10278560 3300006852 Unclassified 1482
52 Ga0075429_100048730 3300006880 Unclassified 3683
53 Ga0068865_100000235 3300006881 Bacteria 30781
54 Ga0075436_100033038 3300006914 Unclassified 3565
55 Ga0097620_100033225 3300006931 Bacteria 5181
56 Ga0075435_100016922 3300007076 Bacteria 5506
57 Ga0099794_10002084 3300007265 Bacteria 7261
58 Ga0099794_10002458 3300007265 Bacteria 6830
59 Ga0111539_10050945 3300009094 Bacteria 4932
60 Ga0111539_10137151 3300009094 Bacteria 2865
61 Ga0105245_10076443 3300009098 Bacteria 3050
62 Ga0105245_10093022 3300009098 Bacteria 2778
63 Ga0105245_10255988 3300009098 Bacteria 1702
64 Ga0114129_10002871 3300009147 Bacteria 24116
65 Ga0114129_10009828 3300009147 Bacteria 13644
66 Ga0114129_10643024 3300009147 Bacteria 1370
67 Ga0105241_10003730 3300009174 Bacteria 11316
68 Ga0105248_10217509 3300009177 Unclassified 2152
69 Ga0105248_10500977 3300009177 Unclassified 1369
70 Ga0105249_10072476 3300009553 Bacteria 3184
71 Ga0105239_10160454 3300010375 Bacteria 2511
72 Ga0157374_10000157 3300013296 Bacteria 62752
73 Ga0157374_10022764 3300013296 Bacteria 5595
74 Ga0163162_10001001 3300013306 Bacteria 26240
75 Ga0157372_10013570 3300013307 Bacteria 8708
76 Ga0157372_10016215 3300013307 Bacteria 7993
77 Ga0157372_10064896 3300013307 Bacteria 4098
78 Ga0157379_10116097 3300014968 Unclassified 2407
79 Ga0157376_10008860 3300014969 Bacteria 7280
80 Ga0207699_10150626 3300025906 Bacteria 1539
81 Ga0207684_10003643 3300025910 Bacteria 14971
82 Ga0207684_10011871 3300025910 Bacteria 7592
83 Ga0207684_10054552 3300025910 Bacteria 3391
84 Ga0207693_10101508 3300025915 Bacteria 2256
85 Ga0207693_10155091 3300025915 Unclassified 1801
86 Ga0207663_10023986 3300025916 Bacteria 3510
87 Ga0207663_10137713 3300025916 Unclassified 1696
88 Ga0207649_10026485 3300025920 Bacteria 3393
89 Ga0207646_10001181 3300025922 Bacteria 32944
90 Ga0207646_10063887 3300025922 Bacteria 3286
91 Ga0207646_10097367 3300025922 Unclassified 2636
92 Ga0207646_10131250 3300025922 Unclassified 2255
93 Ga0207694_10024110 3300025924 Bacteria 4620
94 Ga0207687_10081508 3300025927 Unclassified 2338
95 Ga0207664_10001271 3300025929 Bacteria 16636
96 Ga0207686_10009367 3300025934 Bacteria 5311
97 Ga0207670_10000060 3300025936 Bacteria 77828
98 Ga0207665_10024528 3300025939 Bacteria 3977
99 Ga0207711_10024536 3300025941 Bacteria 5055
100 Ga0207667_10134665 3300025949 Bacteria 2544
101 Ga0207651_10005165 3300025960 Bacteria 6668
102 Ga0207651_10043541 3300025960 Bacteria 2997
103 Ga0207639_10325787 3300026041 Bacteria 1365
104 Ga0207708_10009613 3300026075 Bacteria 7169
105 Ga0207702_10029247 3300026078 Bacteria 4584
106 Ga0207648_10007581 3300026089 Bacteria 10644
107 Ga0207674_10028561 3300026116 Bacteria 5886
108 Ga0207698_10019969 3300026142 Unclassified 4601
109 Ga0209588_1001204 3300027671 Bacteria 6687
110 Ga0209588_1004945 3300027671 Unclassified 3790
111 Ga0265338_10155875 3300028800 Bacteria 1769
112 Ga0265325_10010036 3300031241 Bacteria 5502
113 Ga0373945_0029066 3300035116 Bacteria 1940
114 Ga0373953_0023312 3300035117 Unclassified 2342
115 Ga0373954_0053906 3300035118 Unclassified 1891
116 Ga0373956_0033862 3300035119 Unclassified 2248
117 Ga0373956_0069457 3300035119 Bacteria 1606
118 Ga0373957_0004656 3300035120 Unclassified 4192
119 Ga0373943_0049607 3300035170 Bacteria 2060
120 Ga0373946_0031310 3300035171 Bacteria 2129
121 Ga0373955_0006676 3300035172 Bacteria 5264
122 Ga0373955_0027949 3300035172 Unclassified 2921
123 Ga0373924_0015153 3300035410 Unclassified 2925
124 Ga0373933_0001602 3300035724 Bacteria 13261
125 Ga0373933_0113022 3300035724 Bacteria 1696
126 Ga0373937_0000581 3300036401 Bacteria 32451
127 Ga0373925_0030006 3300037068 Bacteria 3989
128 Ga0400489_46231 3300039093 Unclassified 3163
129 Ga0436363_0639800 3300039450 Bacteria 8795
130 Ga0453684_0048995 3300044712 Bacteria 5577
131 Ga0451576_0069193 3300045051 Bacteria 3673
132 Ga0451576_0523891 3300045051 Bacteria 1245
133 Ga0495592_0201783 3300046454 Bacteria 1342
134 Ga0495641_0045963 3300046461 Unclassified 2009
135 Ga0495582_0040169 3300046473 Unclassified 2576
136 Ga0495582_0108737 3300046473 Bacteria 1557
137 Ga0495608_0008766 3300046511 Bacteria 7075
138 Ga0495618_0037173 3300046514 Bacteria 3057
139 Ga0495628_0037786 3300046516 Bacteria 3869
140 Ga0495630_0002329 3300046517 Bacteria 13211
141 Ga0495652_0124741 3300046529 Bacteria 2048
142 Ga0495586_0002156 3300046535 Bacteria 10692
143 Ga0495587_0028691 3300046536 Bacteria 3382
144 Ga0495587_0059281 3300046536 Unclassified 2247
145 Ga0495645_0032488 3300046543 Bacteria 3807
146 Ga0495656_0170161 3300046615 Bacteria 1065
147 Ga0495634_0093086 3300046642 Bacteria 1955
148 Ga0495669_0034853 3300046684 Bacteria 2219
149 Ga0495613_0000499 3300046689 Bacteria 33220
150 Ga0495613_0052214 3300046689 Unclassified 3011
151 Ga0495624_0158901 3300046690 Bacteria 1381
152 Ga0495581_0088578 3300047315 Bacteria 1795
153 Ga0495604_0000552 3300047317 Bacteria 32953
154 Ga0495602_0006707 3300048088 Bacteria 12073
155 Ga0501038_0334071 3300049574 Bacteria 1183
156 Ga0501039_0120574 3300049575 Unclassified 2055
157 Ga0501040_0102079 3300049576 Unclassified 2001
158 Ga0501041_0013320 3300049577 Bacteria 4873
159 Ga0501042_0041948 3300049578 Bacteria 3255
160 Ga0501048_0027716 3300049582 Bacteria 4114
161 Ga0501071_0002671 3300049587 Bacteria 10916
162 Ga0501072_0053588 3300049588 Unclassified 3177
163 Ga0501074_0074400 3300049590 Unclassified 2439
164 Ga0501075_0114651 3300049591 Bacteria 2049
165 Ga0501076_0005800 3300049592 Bacteria 8910
166 Ga0501079_0016061 3300049741 Bacteria 5720
167 Ga0501035_0135140 3300049822 Unclassified 2148
168 nmdc:mga05p37_17155_c1 3300050507 Bacteria 8735
169 nmdc:mga05p37_5432_c1 3300050507 Bacteria 14974
170 nmdc:mga09592_233928_c1 3300050508 Unclassified 1592
171 nmdc:mga09592_51566_c1 3300050508 Unclassified 3472
172 nmdc:mga0qj67_94433_c1 3300050509 Unclassified 2406
173 nmdc:mga06r32_102570_c1 3300050510 Bacteria 2809
174 nmdc:mga06r32_213068_c1 3300050510 Unclassified 1920
175 nmdc:mga06r32_266865_c1 3300050510 Unclassified 1699
176 nmdc:mga0rr50_2520_c2 3300050513 Bacteria 7926
177 nmdc:mga08x19_27160_c1 3300050514 Unclassified 3578
178 nmdc:mga0a205_277735_c1 3300050515 Unclassified 1551
179 Ga0495595_0073358 3300053084 Bacteria 1621
180 Ga0501084_0003367 3300054114 Bacteria 12948
181 Ga0501082_0027588 3300060353 Unclassified 4888
182 Ga0501082_0069962 3300060353 Bacteria 3022
183 Ga0157374_10022734
184 rootH2_10043812
185 Ga0070658_10008710
186 Ga0070670_100237906
187 Ga0070689_100000051
188 Ga0070689_100034283
189 Ga0070661_100016032
190 Ga0070673_100004423
191 Ga0070673_100068344
192 Ga0070688_100000243
193 Ga0070714_100000975
194 Ga0070711_100010889
195 Ga0070700_100006403
196 Ga0070708_100000676
197 Ga0070708_100208938
198 Ga0068867_100000941
199 Ga0070685_10001116
200 Ga0070706_100011497
201 Ga0070706_100014290
202 Ga0070706_100025621
203 Ga0070706_100057905
204 Ga0070706_100064328
205 Ga0070707_100000347
206 Ga0070707_100105317
207 Ga0070707_100324116
208 Ga0070707_100354278
209 Ga0070698_100000422
210 Ga0070698_100164422
211 Ga0070699_100137457
212 Ga0070697_100001001
213 Ga0070697_100026084
214 Ga0068853_100160431
215 Ga0070686_100000074
216 Ga0068857_100020075
217 Ga0068856_100005246
218 Ga0068859_100033225
219 Ga0068851_10002315
220 Ga0068858_100241553
221 Ga0068858_100434031
222 Ga0081455_10000468
223 Ga0081455_10025308
224 Ga0070716_100000090
225 Ga0070716_100045596
226 Ga0070712_100094419
227 Ga0097621_100001006
228 Ga0068871_100000933
229 Ga0068871_100088255
230 Ga0075428_100067681
231 Ga0075430_100064803
232 Ga0075431_100074517
233 Ga0075433_10278560
234 Ga0075429_100048730
235 Ga0068865_100000235
236 Ga0075436_100033038
237 Ga0097620_100033225
238 Ga0075435_100016922
239 Ga0099794_10002084
240 Ga0099794_10002458
241 Ga0111539_10050945
242 Ga0111539_10137151
243 Ga0105245_10076443
244 Ga0105245_10093022
245 Ga0105245_10255988
246 Ga0114129_10002871
247 Ga0114129_10009828
248 Ga0114129_10643024
249 Ga0105241_10003730
250 Ga0105248_10217509
251 Ga0105248_10500977
252 Ga0105249_10072476
253 Ga0105239_10160454
254 Ga0157374_10000157
255 Ga0157374_10022764
256 Ga0163162_10001001
257 Ga0157372_10013570
258 Ga0157372_10016215
259 Ga0157372_10064896
260 Ga0157379_10116097
261 Ga0157376_10008860
262 Ga0207699_10150626
263 Ga0207684_10003643
264 Ga0207684_10011871
265 Ga0207684_10054552
266 Ga0207693_10101508
267 Ga0207693_10155091
268 Ga0207663_10023986
269 Ga0207663_10137713
270 Ga0207649_10026485
271 Ga0207646_10001181
272 Ga0207646_10063887
273 Ga0207646_10097367
274 Ga0207646_10131250
275 Ga0207694_10024110
276 Ga0207687_10081508
277 Ga0207664_10001271
278 Ga0207686_10009367
279 Ga0207670_10000060
280 Ga0207665_10024528
281 Ga0207711_10024536
282 Ga0207667_10134665
283 Ga0207651_10005165
284 Ga0207651_10043541
285 Ga0207639_10325787
286 Ga0207708_10009613
287 Ga0207702_10029247
288 Ga0207648_10007581
289 Ga0207674_10028561
290 Ga0207698_10019969
291 Ga0209588_1001204
292 Ga0209588_1004945
293 Ga0265338_10155875
294 Ga0265325_10010036
295 Ga0373945_0029066
296 Ga0373953_0023312
297 Ga0373954_0053906
298 Ga0373956_0033862
299 Ga0373956_0069457
300 Ga0373957_0004656
301 Ga0373943_0049607
302 Ga0373946_0031310
303 Ga0373955_0006676
304 Ga0373955_0027949
305 Ga0373924_0015153
306 Ga0373933_0001602
307 Ga0373933_0113022
308 Ga0373937_0000581
309 Ga0373925_0030006
310 Ga0400489_46231
311 Ga0436363_0639800
312 Ga0453684_0048995
313 Ga0451576_0069193
314 Ga0451576_0523891
315 Ga0495592_0201783
316 Ga0495641_0045963
317 Ga0495582_0040169
318 Ga0495582_0108737
319 Ga0495608_0008766
320 Ga0495618_0037173
321 Ga0495628_0037786
322 Ga0495630_0002329
323 Ga0495652_0124741
324 Ga0495586_0002156
325 Ga0495587_0028691
326 Ga0495587_0059281
327 Ga0495645_0032488
328 Ga0495656_0170161
329 Ga0495634_0093086
330 Ga0495669_0034853
331 Ga0495613_0000499
332 Ga0495613_0052214
333 Ga0495624_0158901
334 Ga0495581_0088578
335 Ga0495604_0000552
336 Ga0495602_0006707
337 Ga0501038_0334071
338 Ga0501039_0120574
339 Ga0501040_0102079
340 Ga0501041_0013320
341 Ga0501042_0041948
342 Ga0501048_0027716
343 Ga0501071_0002671
344 Ga0501072_0053588
345 Ga0501074_0074400
346 Ga0501075_0114651
347 Ga0501076_0005800
348 Ga0501079_0016061
349 Ga0501035_0135140
350 nmdc:mga05p37_17155_c1
351 nmdc:mga05p37_5432_c1
352 nmdc:mga09592_233928_c1
353 nmdc:mga09592_51566_c1
354 nmdc:mga0qj67_94433_c1
355 nmdc:mga06r32_102570_c1
356 nmdc:mga06r32_213068_c1
357 nmdc:mga06r32_266865_c1
358 nmdc:mga0rr50_2520_c2
359 nmdc:mga08x19_27160_c1
360 nmdc:mga0a205_277735_c1
361 Ga0495595_0073358
362 Ga0501084_0003367
363 Ga0501082_0027588
364 Ga0501082_0069962

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

41

160

0.98

PF03447

NAD_binding_3

Homoserine dehydrogenase, NAD binding domain

47

157

0.93

PF22725

GFO_IDH_MocA_C3

GFO/IDH/MocA C-terminal domain

168

302

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bvj-assembly4.cif.gz_D udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.9099 2 355
7bvj-assembly3.cif.gz_C udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.902 2 355
7bvj-assembly4.cif.gz_D udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.8839 2 355
7bvj-assembly3.cif.gz_C udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.8765 2 355
7bvk-assembly2.cif.gz_B udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p212121) 0.8623 2 355
ID Description Score Start End Superfamily
af_P77503_10_129_3.30.360.10 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.958 2 119 3.30.360.10
af_Q2G1E6_2_122_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9569 1 118 3.40.50.720
af_Q9VJH7_91_211_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9531 1 118 3.40.50.720
af_Q2G1E5_4_119_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9487 2 116 3.40.50.720
af_M9PE54_6_126_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9486 1 118 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A533ZSE8-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9962 1 76 GO:0000166
AF-A0A3C1S5E3-F1-model_v4 Dehydrogenase 0.9783 2 104 GO:0000166
GO:0003824
AF-A0A3C0VKN9-F1-model_v4 Oxidoreductase 0.9723 1 119 GO:0000166
AF-A0A2V7XE79-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9668 2 353 GO:0000166
AF-A0A351MHT5-F1-model_v4 Dehydrogenase 0.9571 2 129 GO:0000166
GO:0016491

Map