F278437

General Info

Members Datasets Scaffolds Average Seq Length
182 136 170 295

Family's Representative Sequence

Representative Sequence 3300005262|Ga0065165_1002195|Ga0065165_100219513
Length 314
Sequence MAELDDLSSYVAVVRAGGFRDAARATGSSPSGLSEAVRRLETRLGVRLLNRTTRSVAPTEAGTRLFERLVPALGEIEAALDVVNAFRDRPAGTLRLNVPANVARIVLPPILADFLKAYPDIRVEVTVEDGFVDVPAAGADAGIRYDERLEADMIAVPIGPRTQRFATAAAPAYLEARGRPQHPRDLLDHACMRGRFSSGTMGAWEFERAGEVVRVDPTGPLVIQPGLAAELMIDAAVAGLGIVHLFEDWLRPHLASGALEPVLEDWWESSPGRSCIIPAAAICPRRCAPLSTSSRRAAAEGQAGLRRKGIFQSR

Samples

Sample ID Description Type Environment
1 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
2 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
3 2718217991 Paraburkholderia sprentiae WSM5005 Isolate Nodule
4 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
5 2839094727 Herbaspirillum robiniae HZ10 Isolate Nodule
6 2857564685 Duganella sp. R-74599 Isolate Unclassified
7 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
8 2885270888 Paraburkholderia sp. UYCPa14C Isolate Unclassified
9 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
10 2919527303 Paraburkholderia strydomiana 3827 Isolate Unclassified
11 3005445848 Rhizobium sp. WYJ-E13 Isolate Unclassified
12 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
13 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
14 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
15 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
16 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
18 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
19 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
20 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
21 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
22 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
23 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
24 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
25 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
26 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
27 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
28 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
29 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
30 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
31 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
38 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
39 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
40 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
41 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
46 3300012502 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610 Metagenome Rhizosphere
47 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
48 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
49 3300015687 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 002.1_G08 Metagenome Rhizosphere
50 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
55 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
56 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
59 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
60 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
62 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
63 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
64 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
83 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
84 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
85 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
86 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
87 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
88 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
89 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
92 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
93 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
94 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
95 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
96 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
97 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
98 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
99 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
100 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
101 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
102 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
103 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
104 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
105 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
106 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
107 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
108 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
109 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
110 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
111 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
112 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
113 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
114 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
115 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
116 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
117 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
118 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
119 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
124 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
125 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
126 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
127 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
128 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
129 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
130 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
131 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
132 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
133 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
134 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
135 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
136 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.31
Metatranscriptomes 1.1
Isolates 6.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.82
Nodule 2.2
Rhizoplane 2.2
Rhizosphere 57.14
Stem 0
Stem Tuber 0
Unclassified 12.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10005375 3300001989 Bacteria 4875
2 JGI24737J22298_10004132 3300001990 Bacteria 5075
3 JGI24735J21928_10009750 3300002067 Bacteria 3077
4 JGI24735J21928_10010692 3300002067 Bacteria 2920
5 JGI25150J39212_1003463 3300002774 Bacteria 3684
6 JGI25406J46586_10000445 3300003203 Bacteria 19150
7 rootH1_10027489 3300003316 Bacteria 8066
8 rootH2_10210576 3300003320 Bacteria 1326
9 rootH1_10092349 3300003323 Bacteria 2984
10 rootH1_10123494 3300003323 Bacteria 1427
11 Ga0006562J51391_1076377 3300003578 Bacteria 6277
12 Ga0006562J51391_1076378 3300003578 Bacteria 4440
13 Ga0055539_1006400 3300003752 Bacteria 1507
14 Ga0055533_1001384 3300003756 Bacteria 6450
15 Ga0055533_1002867 3300003756 Bacteria 3718
16 Ga0055525_1000164 3300003759 Bacteria 85555
17 Ga0055527_1000061 3300003760 Bacteria 91171
18 Ga0055527_1000065 3300003760 Bacteria 88416
19 Ga0055535_1000195 3300003761 Bacteria 64294
20 Ga0055535_1000197 3300003761 Bacteria 64126
21 Ga0055542_1000097 3300003762 Bacteria 118227
22 Ga0055542_1000140 3300003762 Bacteria 90195
23 Ga0055529_1000157 3300003763 Bacteria 93119
24 Ga0055529_1000269 3300003763 Bacteria 61800
25 Ga0065165_1002195 3300005262 Bacteria 17529
26 Ga0065165_1004041 3300005262 Bacteria 9536
27 Ga0070668_100164131 3300005347 Bacteria 1804
28 Ga0070659_100065667 3300005366 Bacteria 2874
29 Ga0070662_100031568 3300005457 Bacteria 3719
30 Ga0070662_100369436 3300005457 Bacteria 1179
31 Ga0070665_100486256 3300005548 Bacteria 1245
32 Ga0068855_100026155 3300005563 Bacteria 6981
33 Ga0068857_100028116 3300005577 Bacteria 4960
34 Ga0068854_100007960 3300005578 Bacteria 6786
35 Ga0068856_100023465 3300005614 Bacteria 5998
36 Ga0068852_100021397 3300005616 Bacteria 5164
37 Ga0068851_10092061 3300005834 Bacteria 1597
38 Ga0068860_100014860 3300005843 Bacteria 7612
39 Ga0068862_100099416 3300005844 Bacteria 2543
40 Ga0075367_10112761 3300006178 Bacteria 1670
41 Ga0105240_10060880 3300009093 Bacteria 4706
42 Ga0105245_10167446 3300009098 Bacteria 2090
43 Ga0105237_10006379 3300009545 Bacteria 13088
44 Ga0105239_10041197 3300010375 Bacteria 5061
45 Ga0105239_10553813 3300010375 Bacteria 1310
46 Ga0157347_1001559 3300012502 Bacteria 1822
47 Ga0171462_1032 3300013250 Bacteria 98473
48 Ga0182006_1016700 3300015261 Bacteria 3129
49 Ga0183368_1002 3300015687 Bacteria 1865598
50 Ga0209674_100061 3300025226 Bacteria 280844
51 Ga0209674_100086 3300025226 Bacteria 187776
52 Ga0209674_100605 3300025226 Bacteria 13646
53 Ga0209672_100029 3300025228 Bacteria 339298
54 Ga0209672_100049 3300025228 Bacteria 238787
55 Ga0209563_100051 3300025230 Bacteria 340545
56 Ga0209258_100053 3300025242 Bacteria 339233
57 Ga0209258_100087 3300025242 Bacteria 238787
58 Ga0209258_101393 3300025242 Bacteria 8684
59 Ga0207425_1001626 3300025245 Bacteria 9066
60 Ga0209026_1000060 3300025250 Bacteria 220052
61 Ga0209677_100876 3300025253 Bacteria 14771
62 Ga0209677_107386 3300025253 Bacteria 2348
63 Ga0209148_1000009 3300025254 Bacteria 1395625
64 Ga0209148_1000096 3300025254 Bacteria 238787
65 Ga0209759_1000171 3300025256 Bacteria 109243
66 Ga0209129_1002517 3300025258 Bacteria 8932
67 Ga0209455_1000060 3300025272 Bacteria 339298
68 Ga0209455_1000088 3300025272 Bacteria 238787
69 Ga0209025_1035349 3300025294 Bacteria 2259
70 Ga0209758_1000247 3300025297 Bacteria 110976
71 Ga0207426_1031519 3300025302 Bacteria 1729
72 Ga0209257_1009967 3300025304 Bacteria 4933
73 Ga0207656_10056884 3300025321 Bacteria 1706
74 Ga0207647_10007807 3300025904 Bacteria 7701
75 Ga0207647_10010975 3300025904 Bacteria 6372
76 Ga0207695_10000800 3300025913 Bacteria 58751
77 Ga0207671_10000037 3300025914 Bacteria 230395
78 Ga0207657_10208124 3300025919 Bacteria 1571
79 Ga0207649_10250812 3300025920 Bacteria 1275
80 Ga0207681_10119877 3300025923 Bacteria 1928
81 Ga0207687_10106813 3300025927 Bacteria 2070
82 Ga0207690_10029561 3300025932 Bacteria 3486
83 Ga0207706_10027974 3300025933 Bacteria 5038
84 Ga0207706_10038835 3300025933 Bacteria 4223
85 Ga0207667_10000185 3300025949 Bacteria 90844
86 Ga0207668_10168023 3300025972 Bacteria 1717
87 Ga0207640_10000628 3300025981 Bacteria 20692
88 Ga0207702_10002786 3300026078 Bacteria 16383
89 Ga0207674_10007597 3300026116 Bacteria 12631
90 Ga0268265_10091633 3300028380 Bacteria 2431
91 Ga0268264_10036807 3300028381 Bacteria 4033
92 Ga0265325_10003840 3300031241 Bacteria 9661
93 Ga0265325_10090563 3300031241 Bacteria 1509
94 Ga0265339_10039949 3300031249 Bacteria 2609
95 Ga0265313_10002155 3300031595 Bacteria 17475
96 Ga0307412_10128372 3300031911 Bacteria 1837
97 Ga0395899_0017611 3300037312 Bacteria 5441
98 Ga0395900_0003797 3300037418 Bacteria 16176
99 Ga0395900_0021186 3300037418 Bacteria 6645
100 Ga0395898_0130296 3300037466 Bacteria 2409
101 Ga0395898_0183865 3300037466 Bacteria 1997
102 Ga0395898_0308181 3300037466 Bacteria 1510
103 Ga0395905_0009485 3300037471 Bacteria 9511
104 Ga0395905_0053588 3300037471 Bacteria 3775
105 Ga0395905_0114462 3300037471 Bacteria 2534
106 Ga0395905_0210328 3300037471 Bacteria 1822
107 Ga0395905_0270984 3300037471 Bacteria 1583
108 Ga0395905_0399864 3300037471 Bacteria 1268
109 Ga0395901_0064830 3300038443 Bacteria 3803
110 Ga0395901_0104097 3300038443 Bacteria 2978
111 Ga0395901_0140512 3300038443 Bacteria 2538
112 Ga0395901_0578037 3300038443 Bacteria 1135
113 Ga0436360_1141882 3300039438 Bacteria 3906
114 Ga0439463_005881 3300042016 Bacteria 3046
115 Ga0439458_0005141 3300042157 Bacteria 2950
116 Ga0466969_0038780 3300044656 Bacteria 2395
117 Ga0466961_0008632 3300044693 Bacteria 6493
118 Ga0466970_0002823 3300044765 Bacteria 8389
119 Ga0466957_0003186 3300044842 Bacteria 8957
120 Ga0466957_0239078 3300044842 Bacteria 1204
121 Ga0451576_0613510 3300045051 Bacteria 1143
122 Ga0495650_0000253 3300046471 Bacteria 104338
123 Ga0495583_0006284 3300046506 Bacteria 7808
124 Ga0495606_0154624 3300046507 Bacteria 1343
125 Ga0495648_0017610 3300046524 Bacteria 5099
126 Ga0495648_0045166 3300046524 Bacteria 2743
127 Ga0495668_0084715 3300046616 Bacteria 1738
128 Ga0495625_0009798 3300046660 Bacteria 7971
129 Ga0495625_0081346 3300046660 Bacteria 2255
130 Ga0495625_0198325 3300046660 Bacteria 1326
131 Ga0495670_0000042 3300046691 Bacteria 69501
132 Ga0495589_0053654 3300046794 Bacteria 1989
133 Ga0495683_0032729 3300047323 Bacteria 2648
134 Ga0495687_000005 3300047443 Bacteria 610401
135 Ga0495677_0001587 3300047445 Bacteria 9164
136 Ga0495686_0001096 3300047472 Bacteria 32214
137 Ga0495686_0002713 3300047472 Bacteria 16203
138 Ga0495686_0036271 3300047472 Bacteria 3165
139 Ga0495626_0002351 3300048091 Bacteria 13316
140 Ga0496113_0001432 3300048916 Bacteria 13243
141 Ga0496113_0245740 3300048916 Unclassified 1428
142 Ga0496115_0000098 3300048918 Bacteria 82309
143 Ga0496116_0129193 3300048919 Bacteria 1444
144 Ga0496118_0002412 3300048921 Bacteria 25221
145 Ga0496118_0014280 3300048921 Bacteria 7449
146 Ga0496118_0069522 3300048921 Bacteria 2549
147 Ga0496120_0016682 3300048923 Bacteria 4792
148 Ga0496121_0035384 3300048924 Bacteria 4478
149 Ga0496121_0036307 3300048924 Bacteria 4394
150 Ga0496125_0001347 3300048928 Bacteria 36226
151 Ga0496125_0005124 3300048928 Bacteria 14746
152 Ga0501032_0073764 3300049569 Bacteria 2273
153 Ga0501034_0312424 3300049571 Bacteria 1506
154 Ga0501046_0063550 3300049580 Bacteria 2882
155 Ga0501047_0022833 3300049581 Bacteria 6006
156 Ga0501069_0009656 3300049585 Bacteria 5098
157 Ga0501070_0031480 3300049586 Bacteria 4445
158 Ga0501035_0094307 3300049822 Bacteria 2632
159 nmdc:mga06z11_83898_c1 3300050494 Bacteria 1715
160 nmdc:mga0rr50_634447_c1 3300050513 Bacteria 911
161 Ga0495619_0263257 3300053085 Bacteria 1195
162 Ga0500643_002154 3300053087 Bacteria 10425
163 Ga0500641_0002001 3300053096 Bacteria 7227
164 Ga0500594_0011708 3300053118 Bacteria 2052
165 Ga0500618_000352 3300053125 Bacteria 32078
166 Ga0500568_0002349 3300053139 Bacteria 11212
167 Ga0500568_0012832 3300053139 Bacteria 3838
168 Ga0500588_0018405 3300053146 Bacteria 1839
169 Ga0500616_0000080 3300053153 Bacteria 200381
170 Ga0500616_0004675 3300053153 Bacteria 9650

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025920 Ga0207649_10250812 Ga0207649_102508121 251
2 3300037471 Ga0395905_0270984 Ga0395905_0270984_10_780 256
3 3300037466 Ga0395898_0183865 Ga0395898_0183865_1108_1908 257
4 3300005616 Ga0068852_100021397 Ga0068852_1000213972 264
5 3300042157 Ga0439458_0005141 Ga0439458_0005141_85_888 267
6 3300050513 nmdc:mga0rr50_634447_c1 nmdc:mga0rr50_634447_c1_53_865 268
7 3300006178 Ga0075367_10112761 Ga0075367_101127612 270
8 3300013250 Ga0171462_1032 Ga0171462_103239 270
9 3300050494 nmdc:mga06z11_83898_c1 nmdc:mga06z11_83898_c1_303_1205 270
10 3300003756 Ga0055533_1002867 Ga0055533_10028673 271
11 3300049571 Ga0501034_0312424 Ga0501034_0312424_646_1467 272
12 3300025904 Ga0207647_10010975 Ga0207647_100109755 275
13 3300048916 Ga0496113_0001432 Ga0496113_0001432_8516_9460 275
14 3300048918 Ga0496115_0000098 Ga0496115_0000098_23142_24086 275
15 3300015687 Ga0183368_1002 Ga0183368_1002500 277
16 3300025242 Ga0209258_101393 Ga0209258_1013934 277
17 3300049822 Ga0501035_0094307 Ga0501035_0094307_846_1748 277
18 3300053085 Ga0495619_0263257 Ga0495619_0263257_54_962 278
19 3300003752 Ga0055539_1006400 Ga0055539_10064002 279
20 3300003760 Ga0055527_1000061 Ga0055527_100006140 279
21 3300003761 Ga0055535_1000197 Ga0055535_100019714 279
22 3300003762 Ga0055542_1000097 Ga0055542_100009741 279
23 3300003763 Ga0055529_1000157 Ga0055529_100015741 279
24 3300005614 Ga0068856_100023465 Ga0068856_1000234652 279
25 3300025226 Ga0209674_100086 Ga0209674_10008634 279
26 3300025226 Ga0209674_100605 Ga0209674_10060511 279
27 3300025228 Ga0209672_100029 Ga0209672_100029147 279
28 3300025242 Ga0209258_100053 Ga0209258_100053183 279
29 3300025253 Ga0209677_100876 Ga0209677_1008768 279
30 3300025253 Ga0209677_107386 Ga0209677_1073861 279
31 3300025254 Ga0209148_1000009 Ga0209148_1000009147 279
32 3300025272 Ga0209455_1000060 Ga0209455_1000060147 279
33 3300026078 Ga0207702_10002786 Ga0207702_1000278613 279
34 3300003756 Ga0055533_1001384 Ga0055533_10013848 282
35 3300025226 Ga0209674_100061 Ga0209674_10006121 282
36 3300048919 Ga0496116_0129193 Ga0496116_0129193_476_1387 282
37 3300048921 Ga0496118_0069522 Ga0496118_0069522_340_1251 282
38 3300003759 Ga0055525_1000164 Ga0055525_100016416 283
39 3300003760 Ga0055527_1000065 Ga0055527_100006517 283
40 3300003761 Ga0055535_1000195 Ga0055535_100019516 283
41 3300003762 Ga0055542_1000140 Ga0055542_100014016 283
42 3300003763 Ga0055529_1000269 Ga0055529_100026946 283
43 3300025228 Ga0209672_100049 Ga0209672_100049136 283
44 3300025230 Ga0209563_100051 Ga0209563_100051135 283
45 3300025242 Ga0209258_100087 Ga0209258_100087136 283
46 3300025254 Ga0209148_1000096 Ga0209148_1000096136 283
47 3300025272 Ga0209455_1000088 Ga0209455_1000088136 283
48 3300025250 Ga0209026_1000060 Ga0209026_1000060146 284
49 3300025256 Ga0209759_1000171 Ga0209759_100017173 284
50 3300046660 Ga0495625_0198325 Ga0495625_0198325_69_974 289
51 3300025923 Ga0207681_10119877 Ga0207681_101198772 291
52 3300039438 Ga0436360_1141882 Ga0436360_1141882_2870_3754 291
53 3300003203 JGI25406J46586_10000445 JGI25406J46586_1000044518 292
54 iso_pu_bacteria 2839094727 2839098890 292
55 iso_pu_bacteria 8006964411 8006972498 292
56 3300044842 Ga0466957_0239078 Ga0466957_0239078_266_1168 293
57 3300053125 Ga0500618_000352 Ga0500618_000352_5626_6519 294
58 iso_pu_bacteria 2857564685 2857567802 294
59 iso_pu_bacteria 2919527303 2919528067 294
60 3300045051 Ga0451576_0613510 Ga0451576_0613510_195_1085 295
61 iso_pu_bacteria 2515154122 2515684538 295
62 iso_pu_bacteria 2718217991 2719644004 295
63 iso_pu_bacteria 2885270888 2885279378 295
64 iso_pu_bacteria 2902682994 2902684749 295
65 3300002067 JGI24735J21928_10010692 JGI24735J21928_100106923 296
66 3300003320 rootH2_10210576 rootH2_102105761 296
67 3300005548 Ga0070665_100486256 Ga0070665_1004862562 296
68 3300010375 Ga0105239_10553813 Ga0105239_105538132 296
69 3300046506 Ga0495583_0006284 Ga0495583_0006284_372_1265 296
70 3300046507 Ga0495606_0154624 Ga0495606_0154624_312_1205 296
71 3300046524 Ga0495648_0017610 Ga0495648_0017610_209_1102 296
72 3300046524 Ga0495648_0045166 Ga0495648_0045166_1228_2121 296
73 3300046616 Ga0495668_0084715 Ga0495668_0084715_621_1514 296
74 3300046660 Ga0495625_0009798 Ga0495625_0009798_552_1445 296
75 3300047445 Ga0495677_0001587 Ga0495677_0001587_3752_4645 296
76 3300048916 Ga0496113_0245740 Ga0496113_0245740_337_1242 296
77 3300048921 Ga0496118_0014280 Ga0496118_0014280_4699_5592 296
78 3300048923 Ga0496120_0016682 Ga0496120_0016682_1194_2087 296
79 3300048924 Ga0496121_0036307 Ga0496121_0036307_1716_2609 296
80 3300048928 Ga0496125_0005124 Ga0496125_0005124_190_1083 296
81 3300053096 Ga0500641_0002001 Ga0500641_0002001_2520_3413 296
82 3300053118 Ga0500594_0011708 Ga0500594_0011708_595_1488 296
83 3300053139 Ga0500568_0002349 Ga0500568_0002349_701_1594 296
84 iso_pu_bacteria 2884338543 2884342050 296
85 3300046471 Ga0495650_0000253 Ga0495650_0000253_27012_27908 297
86 3300053153 Ga0500616_0004675 Ga0500616_0004675_6863_7762 297
87 iso_pu_bacteria 2599185354 2600200267 297
88 iso_pu_bacteria 2751185897 2753763956 297
89 3300003323 rootH1_10092349 rootH1_100923494 298
90 3300003323 rootH1_10123494 rootH1_101234941 298
91 3300005262 Ga0065165_1004041 Ga0065165_10040414 298
92 3300031249 Ga0265339_10039949 Ga0265339_100399492 298
93 3300046660 Ga0495625_0081346 Ga0495625_0081346_967_1866 298
94 3300047472 Ga0495686_0002713 Ga0495686_0002713_13140_14042 298
95 3300005262 Ga0065165_1002195 Ga0065165_100219513 299
96 3300005347 Ga0070668_100164131 Ga0070668_1001641312 299
97 3300005366 Ga0070659_100065667 Ga0070659_1000656672 299
98 3300005457 Ga0070662_100031568 Ga0070662_1000315681 299
99 3300005843 Ga0068860_100014860 Ga0068860_1000148609 299
100 3300005844 Ga0068862_100099416 Ga0068862_1000994162 299
101 3300025919 Ga0207657_10208124 Ga0207657_102081242 299
102 3300025932 Ga0207690_10029561 Ga0207690_100295612 299
103 3300025933 Ga0207706_10027974 Ga0207706_100279745 299
104 3300025972 Ga0207668_10168023 Ga0207668_101680232 299
105 3300028380 Ga0268265_10091633 Ga0268265_100916331 299
106 3300028381 Ga0268264_10036807 Ga0268264_100368074 299
107 3300037312 Ga0395899_0017611 Ga0395899_0017611_2774_3676 299
108 3300037418 Ga0395900_0003797 Ga0395900_0003797_5797_6699 299
109 3300037418 Ga0395900_0021186 Ga0395900_0021186_1218_2120 299
110 3300037466 Ga0395898_0130296 Ga0395898_0130296_195_1097 299
111 3300037466 Ga0395898_0308181 Ga0395898_0308181_431_1333 299
112 3300037471 Ga0395905_0009485 Ga0395905_0009485_6249_7151 299
113 3300037471 Ga0395905_0053588 Ga0395905_0053588_740_1642 299
114 3300037471 Ga0395905_0114462 Ga0395905_0114462_1247_2149 299
115 3300037471 Ga0395905_0210328 Ga0395905_0210328_715_1617 299
116 3300038443 Ga0395901_0064830 Ga0395901_0064830_1051_1953 299
117 3300038443 Ga0395901_0104097 Ga0395901_0104097_41_943 299
118 3300038443 Ga0395901_0140512 Ga0395901_0140512_98_1000 299
119 3300038443 Ga0395901_0578037 Ga0395901_0578037_195_1097 299
120 3300044656 Ga0466969_0038780 Ga0466969_0038780_688_1590 299
121 3300044693 Ga0466961_0008632 Ga0466961_0008632_489_1391 299
122 3300044765 Ga0466970_0002823 Ga0466970_0002823_297_1199 299
123 3300044842 Ga0466957_0003186 Ga0466957_0003186_4934_5836 299
124 3300047472 Ga0495686_0036271 Ga0495686_0036271_744_1646 299
125 3300049585 Ga0501069_0009656 Ga0501069_0009656_3926_4828 299
126 3300049586 Ga0501070_0031480 Ga0501070_0031480_445_1347 299
127 3300053146 Ga0500588_0018405 Ga0500588_0018405_794_1696 299
128 iso_pu_bacteria 3005445848 3005448076 299
129 3300001989 JGI24739J22299_10005375 JGI24739J22299_100053752 300
130 3300001990 JGI24737J22298_10004132 JGI24737J22298_100041324 300
131 3300002067 JGI24735J21928_10009750 JGI24735J21928_100097502 300
132 3300002774 JGI25150J39212_1003463 JGI25150J39212_10034631 300
133 3300003316 rootH1_10027489 rootH1_100274892 300
134 3300003578 Ga0006562J51391_1076377 Ga0006562J51391_10763774 300
135 3300003578 Ga0006562J51391_1076378 Ga0006562J51391_10763781 300
136 3300005457 Ga0070662_100369436 Ga0070662_1003694361 300
137 3300005563 Ga0068855_100026155 Ga0068855_1000261554 300
138 3300005577 Ga0068857_100028116 Ga0068857_1000281162 300
139 3300005578 Ga0068854_100007960 Ga0068854_1000079604 300
140 3300005834 Ga0068851_10092061 Ga0068851_100920612 300
141 3300009093 Ga0105240_10060880 Ga0105240_100608801 300
142 3300009098 Ga0105245_10167446 Ga0105245_101674462 300
143 3300009545 Ga0105237_10006379 Ga0105237_100063794 300
144 3300010375 Ga0105239_10041197 Ga0105239_100411972 300
145 3300012502 Ga0157347_1001559 Ga0157347_10015591 300
146 3300015261 Ga0182006_1016700 Ga0182006_10167003 300
147 3300025245 Ga0207425_1001626 Ga0207425_10016262 300
148 3300025258 Ga0209129_1002517 Ga0209129_10025172 300
149 3300025294 Ga0209025_1035349 Ga0209025_10353494 300
150 3300025297 Ga0209758_1000247 Ga0209758_1000247104 300
151 3300025302 Ga0207426_1031519 Ga0207426_10315192 300
152 3300025304 Ga0209257_1009967 Ga0209257_10099672 300
153 3300025321 Ga0207656_10056884 Ga0207656_100568842 300
154 3300025904 Ga0207647_10007807 Ga0207647_100078074 300
155 3300025913 Ga0207695_10000800 Ga0207695_100008004 300
156 3300025914 Ga0207671_10000037 Ga0207671_10000037119 300
157 3300025927 Ga0207687_10106813 Ga0207687_101068132 300
158 3300025933 Ga0207706_10038835 Ga0207706_100388354 300
159 3300025949 Ga0207667_10000185 Ga0207667_1000018581 300
160 3300025981 Ga0207640_10000628 Ga0207640_1000062820 300
161 3300026116 Ga0207674_10007597 Ga0207674_100075974 300
162 3300031241 Ga0265325_10003840 Ga0265325_100038409 300
163 3300031241 Ga0265325_10090563 Ga0265325_100905632 300
164 3300031595 Ga0265313_10002155 Ga0265313_1000215511 300
165 3300031911 Ga0307412_10128372 Ga0307412_101283721 300
166 3300037471 Ga0395905_0399864 Ga0395905_0399864_284_1216 300
167 3300042016 Ga0439463_005881 Ga0439463_005881_1046_1948 300
168 3300046691 Ga0495670_0000042 Ga0495670_0000042_16510_17415 300
169 3300046794 Ga0495589_0053654 Ga0495589_0053654_567_1493 300
170 3300047323 Ga0495683_0032729 Ga0495683_0032729_1394_2320 300
171 3300047443 Ga0495687_000005 Ga0495687_000005_541037_541963 300
172 3300047472 Ga0495686_0001096 Ga0495686_0001096_21847_22749 300
173 3300048091 Ga0495626_0002351 Ga0495626_0002351_1254_2171 300
174 3300048921 Ga0496118_0002412 Ga0496118_0002412_21670_22572 300
175 3300048924 Ga0496121_0035384 Ga0496121_0035384_81_983 300
176 3300048928 Ga0496125_0001347 Ga0496125_0001347_3407_4309 300
177 3300049569 Ga0501032_0073764 Ga0501032_0073764_1032_1949 300
178 3300049580 Ga0501046_0063550 Ga0501046_0063550_1355_2272 300
179 3300049581 Ga0501047_0022833 Ga0501047_0022833_951_1868 300
180 3300053087 Ga0500643_002154 Ga0500643_002154_832_1737 300
181 3300053139 Ga0500568_0012832 Ga0500568_0012832_956_1864 300
182 3300053153 Ga0500616_0000080 Ga0500616_0000080_130537_131445 300

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

4

63

0.97

PF03466

LysR_substrate

LysR substrate binding domain

87

291

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7trv-assembly1.cif.gz_A crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.9112 4 84
5x0n-assembly3.cif.gz_E regulatory domain of variant c227s aphb from vibrio vulnificus 0.9064 91 296
5x0n-assembly3.cif.gz_F regulatory domain of variant c227s aphb from vibrio vulnificus 0.9047 92 296
4pzj-assembly1.cif.gz_A-2 1.60 angstrom resolution crystal structure of a transcriptional regulator of the lysr family from eggerthella lenta dsm 2243 0.9047 6 70
5fhk-assembly1.cif.gz_A regulatory domain of aphb in vibrio vulnificus 0.9043 91 298
ID Description Score Start End Superfamily
af_P75836_3_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9561 4 87 1.10.10.10
af_P77333_5_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9442 3 89 1.10.10.10
af_P75836_90_290_3.40.190.290 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2; 0.9363 89 295 3.40.190.290
af_P77333_5_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.934 3 89 1.10.10.10
af_P0A9G2_1_86_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9317 5 81 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4U6BBZ3-F1-model_v4 LysR family transcriptional regulator 0.9454 149 298 GO:0003700
GO:0006351
GO:0043565
AF-A0A4U6BBZ3-F1-model_v4 LysR family transcriptional regulator 0.9392 149 298 GO:0003700
GO:0006351
GO:0043565
AF-A0A443GY29-F1-model_v4 deleted 0.9384 1 294
AF-J3IBY5-F1-model_v4 Transcriptional regulator 0.923 1 294 GO:0003700
GO:0006351
GO:0043565
AF-A0A085F9V0-F1-model_v4 Putative transcriptional regulator 0.9195 1 298 GO:0003700
GO:0006351
GO:0043565

Feature Viewer

pLDDT pTM Quality
88.06 0.69 Medium
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Predicted Structure (AlphaFold2)

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