F278286

General Info

Members Datasets Scaffolds Average Seq Length
181 154 362 277

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2939657138|2939659973
Length 304
Sequence QTTGAQGTGAQGTGAQSTGAQAATPRPVAHPRLSLNQATIKYADLAEAIDATVNAGYESIGLWREPVQAAGLGRSIRLVEDSGLRVSSLCRGGFFTMEEGLARRESIDDNRRAIAEAHALGAPALVLVAGGLPAGSRDLIGARSRVRDAIAELADDAAAAGVTLTIEPLHPMYASDRAVVSTLGQALEIAEEFPLGVVGAVVDTFHVWWDPRLLEQIARAGDRIASYQVCDWATPLPADVLLGRHYPGDGVIDFAGITAAVEAAGYRGDVEVEIFNQQIWDTPYATVAARTRDSFAEVVAPHLS

Samples

Sample ID Description Type Environment
1 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
27 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
32 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
33 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
36 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
37 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300012490 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610 Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
51 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
68 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
69 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
70 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
71 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
72 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
73 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
74 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
75 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
76 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
77 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
78 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
79 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
80 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
81 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
82 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
83 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
84 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
85 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
86 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
87 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
88 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
89 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
90 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
91 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
92 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
93 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
94 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
95 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
96 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
97 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
98 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
99 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
100 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
101 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
102 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
103 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
104 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
105 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
106 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
107 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
108 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
109 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
110 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
113 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
114 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
115 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
116 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
117 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
118 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
119 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
120 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
121 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
126 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
127 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
128 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
132 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
135 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
136 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
137 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
138 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
139 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
140 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
141 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
142 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
143 2891562705 Microbispora tritici MT50 Isolate Unclassified
144 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
145 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
146 2902792274 Mycolicibacterium sp. P9-64 Isolate Unclassified
147 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
148 2919395869 Microbacterium resistens 2980 Isolate Unclassified
149 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
150 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
151 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
152 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
153 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
154 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.4
Metatranscriptomes 0.55
Isolates 11.05

Biome Distribution

Category Percentage (%)
Aerial Root 0.55
Bulb 0
Endosphere 3.31
Nodule 1.1
Rhizoplane 0.55
Rhizosphere 86.74
Stem 0
Stem Tuber 0
Unclassified 0.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10012135 3300001990 Bacteria 2812
2 rootL2_10307164 3300003322 Bacteria 1064
3 JGI25407J50210_10007479 3300003373 Bacteria 2737
4 Ga0070680_100046684 3300005336 Bacteria 3524
5 Ga0070682_100250792 3300005337 Bacteria 1276
6 Ga0070682_100304372 3300005337 Bacteria 1171
7 Ga0070692_10200203 3300005345 Bacteria 1169
8 Ga0070659_100080244 3300005366 Bacteria 2605
9 Ga0070667_100051174 3300005367 Bacteria 3482
10 Ga0070709_10361796 3300005434 Bacteria 1075
11 Ga0070714_100259354 3300005435 Bacteria 1609
12 Ga0070710_10139031 3300005437 Bacteria 1487
13 Ga0070678_100337287 3300005456 Bacteria 1292
14 Ga0070662_100260208 3300005457 Bacteria 1398
15 Ga0070681_10001779 3300005458 Bacteria 19333
16 Ga0070679_100000354 3300005530 Bacteria 39082
17 Ga0070679_100364478 3300005530 Bacteria 1392
18 Ga0070684_100032013 3300005535 Bacteria 4479
19 Ga0068855_100650325 3300005563 Bacteria 1132
20 Ga0068852_100039386 3300005616 Bacteria 3979
21 Ga0068862_100378891 3300005844 Bacteria 1319
22 Ga0081455_10003707 3300005937 Bacteria 17493
23 Ga0081538_10000050 3300005981 Bacteria 110501
24 Ga0081538_10107686 3300005981 Bacteria 1379
25 Ga0081539_10001776 3300005985 Bacteria 34326
26 Ga0070717_10007464 3300006028 Bacteria 8116
27 Ga0070717_10295032 3300006028 Bacteria 1440
28 Ga0075368_10039212 3300006042 Bacteria 1856
29 Ga0075364_10054732 3300006051 Bacteria 2610
30 Ga0075432_10001737 3300006058 Bacteria 7174
31 Ga0070716_100056853 3300006173 Bacteria 2246
32 Ga0070712_100126887 3300006175 Bacteria 1928
33 Ga0075367_10020829 3300006178 Bacteria 3657
34 Ga0075428_100031299 3300006844 Bacteria 5884
35 Ga0075430_100125996 3300006846 Bacteria 2135
36 Ga0075431_100095680 3300006847 Bacteria 3066
37 Ga0075433_10009847 3300006852 Bacteria 7660
38 Ga0075433_10019172 3300006852 Bacteria 5693
39 Ga0075434_100008348 3300006871 Bacteria 9626
40 Ga0075434_100070609 3300006871 Bacteria 3483
41 Ga0075429_100016737 3300006880 Bacteria 6350
42 Ga0075436_100003127 3300006914 Bacteria 11347
43 Ga0075435_100002132 3300007076 Bacteria 13030
44 Ga0075435_100246800 3300007076 Bacteria 1519
45 Ga0111539_10000537 3300009094 Bacteria 48227
46 Ga0114129_10060748 3300009147 Bacteria 5284
47 Ga0114129_10252523 3300009147 Bacteria 2367
48 Ga0105238_10175309 3300009551 Bacteria 2121
49 Ga0105239_10378929 3300010375 Bacteria 1599
50 Ga0105246_10435003 3300011119 Bacteria 1099
51 Ga0157322_1001108 3300012490 Bacteria 1253
52 Ga0157370_10087992 3300013104 Bacteria 2917
53 Ga0157369_10133333 3300013105 Bacteria 2631
54 Ga0157369_10353135 3300013105 Bacteria 1527
55 Ga0163162_10122993 3300013306 Bacteria 2700
56 Ga0157372_10220670 3300013307 Bacteria 2198
57 Ga0157375_10561888 3300013308 Bacteria 1302
58 Ga0157375_10880663 3300013308 Bacteria 1040
59 Ga0163163_10480971 3300014325 Bacteria 1303
60 Ga0206353_10951250 3300020082 Bacteria 2607
61 Ga0228598_1012556 3300024227 Bacteria 1682
62 Ga0207705_10067591 3300025909 Bacteria 2586
63 Ga0207707_10004297 3300025912 Bacteria 12617
64 Ga0207660_10041615 3300025917 Bacteria 3220
65 Ga0207652_10000964 3300025921 Bacteria 26866
66 Ga0207652_10173874 3300025921 Bacteria 1933
67 Ga0207700_10059056 3300025928 Bacteria 2900
68 Ga0207700_10142075 3300025928 Bacteria 1974
69 Ga0207700_10178013 3300025928 Unclassified 1779
70 Ga0207664_10111072 3300025929 Bacteria 2280
71 Ga0207690_10432718 3300025932 Bacteria 1054
72 Ga0207706_10007793 3300025933 Bacteria 9882
73 Ga0207667_10058724 3300025949 Bacteria 4033
74 Ga0207667_10788322 3300025949 Bacteria 948
75 Ga0207658_10018438 3300025986 Bacteria 4819
76 Ga0207658_10053865 3300025986 Bacteria 2975
77 Ga0207658_10064223 3300025986 Bacteria 2753
78 Ga0207639_10276990 3300026041 Bacteria 1474
79 Ga0207678_10001092 3300026067 Bacteria 24900
80 Ga0207678_10248684 3300026067 Bacteria 1523
81 Ga0207702_10038803 3300026078 Bacteria 3989
82 Ga0207674_10091265 3300026116 Bacteria 3036
83 Ga0207698_10088364 3300026142 Bacteria 2527
84 Ga0207428_10002359 3300027907 Bacteria 18861
85 Ga0207428_10006298 3300027907 Bacteria 10973
86 Ga0265318_10049040 3300028577 Bacteria 1589
87 Ga0265338_10112098 3300028800 Bacteria 2194
88 Ga0265320_10057374 3300031240 Bacteria 1868
89 Ga0265340_10001474 3300031247 Bacteria 13487
90 Ga0307408_100002815 3300031548 Bacteria 12077
91 Ga0307406_10000019 3300031901 Bacteria 98555
92 Ga0307409_100000024 3300031995 Bacteria 51734
93 Ga0307416_100000040 3300032002 Bacteria 132572
94 Ga0307416_100286131 3300032002 Bacteria 1629
95 Ga0307414_10369665 3300032004 Bacteria 1236
96 Ga0307411_10061758 3300032005 Bacteria 2496
97 Ga0307415_100001970 3300032126 Bacteria 10099
98 Ga0373932_0044967 3300035112 Bacteria 1290
99 Ga0373957_0027663 3300035120 Bacteria 2061
100 Ga0373942_0000227 3300035207 Bacteria 14852
101 Ga0373962_0000297 3300035242 Bacteria 10707
102 Ga0373937_0021804 3300036401 Bacteria 5750
103 Ga0439448_0031867 3300042005 Bacteria 1676
104 Ga0439450_026428 3300042008 Bacteria 1279
105 Ga0439455_0022759 3300042012 Bacteria 1505
106 Ga0439463_010366 3300042016 Bacteria 2291
107 Ga0439463_019323 3300042016 Bacteria 1697
108 Ga0439435_0023302 3300042436 Bacteria 1625
109 Ga0439440_0008569 3300042993 Bacteria 2102
110 Ga0466969_0019832 3300044656 Bacteria 3488
111 Ga0466970_0047754 3300044765 Bacteria 2282
112 Ga0466960_0000080 3300044901 Bacteria 31710
113 Ga0495651_0030079 3300046462 Bacteria 4234
114 Ga0495653_0002535 3300046463 Bacteria 14553
115 Ga0495580_0076194 3300046472 Bacteria 2340
116 Ga0495664_0044815 3300046477 Bacteria 2622
117 Ga0495608_0014715 3300046511 Bacteria 5429
118 Ga0495628_0088100 3300046516 Bacteria 2406
119 Ga0495652_0386508 3300046529 Bacteria 994
120 Ga0495640_0041749 3300046533 Bacteria 3204
121 Ga0495645_0076822 3300046543 Bacteria 2402
122 Ga0495645_0344203 3300046543 Bacteria 962
123 Ga0495667_0003096 3300046559 Bacteria 11152
124 Ga0495625_0130819 3300046660 Bacteria 1700
125 Ga0495635_0013958 3300046663 Bacteria 5621
126 Ga0495599_0035112 3300046678 Bacteria 3148
127 Ga0495623_0048141 3300046679 Bacteria 2705
128 Ga0495646_0056713 3300046680 Bacteria 2347
129 Ga0495671_0154496 3300046692 Bacteria 1117
130 Ga0495600_0084117 3300046809 Bacteria 2076
131 Ga0495604_0004205 3300047317 Bacteria 11400
132 Ga0495604_0032424 3300047317 Bacteria 4140
133 Ga0495674_0221778 3300047319 Bacteria 1563
134 Ga0495680_0002083 3300047322 Bacteria 20810
135 Ga0495675_0005710 3300047444 Bacteria 7609
136 Ga0495684_0028857 3300047471 Bacteria 4259
137 Ga0495602_0014557 3300048088 Bacteria 7981
138 Ga0495602_0242068 3300048088 Bacteria 1349
139 Ga0496102_0014101 3300048905 Bacteria 6944
140 Ga0496119_0001518 3300048922 Bacteria 27736
141 Ga0496122_0001454 3300048925 Bacteria 38284
142 Ga0496123_0000625 3300048926 Bacteria 59349
143 Ga0496126_0116384 3300048929 Bacteria 2323
144 Ga0501031_0037542 3300049568 Bacteria 3161
145 Ga0501034_0075798 3300049571 Bacteria 3370
146 Ga0501038_0215182 3300049574 Bacteria 1535
147 Ga0501046_0075668 3300049580 Bacteria 2610
148 Ga0501070_0002051 3300049586 Bacteria 17708
149 Ga0501070_0340149 3300049586 Bacteria 1219
150 Ga0501073_0086460 3300049589 Bacteria 2181
151 nmdc:mga0yw44_99313_c1 3300050492 Bacteria 1852
152 nmdc:mga04h51_48741_c1 3300050495 Bacteria 1412
153 nmdc:mga06r32_68440_c1 3300050510 Bacteria 3430
154 nmdc:mga08y16_2871_c1 3300050511 Bacteria 17729
155 nmdc:mga0n895_110187_c1 3300050512 Bacteria 2769
156 nmdc:mga0n895_14772_c1 3300050512 Bacteria 7104
157 nmdc:mga08x19_2468_c1 3300050514 Bacteria 11253
158 nmdc:mga0a205_116_c3 3300050515 Bacteria 9931
159 nmdc:mga0a205_7312_c1 3300050515 Bacteria 9991
160 Ga0500593_000100 3300053117 Bacteria 32734
161 Ga0590075_009823 3300059424 Bacteria 2297
162 2939659973 2939657138 Bacteria 3740283
163 2676490776 2675903060 Bacteria 10051191
164 2816422593 2816332119 Bacteria 8120218
165 2819745874 2818991472 Bacteria 10089953
166 2819746034 2818991472 Bacteria 10089953
167 2821271332 2821268502 Bacteria 3750023
168 2856743933 2856741275 Bacteria 8096094
169 2870625219 2870622029 Bacteria 3643329
170 2891566970 2891562705 Bacteria 8039471
171 2895437216 2895427314 Bacteria 13147766
172 2895662617 2895660088 Bacteria 3782833
173 2902797854 2902792274 Bacteria 7270173
174 2917738090 2917736166 Bacteria 9690793
175 2919398875 2919395869 Bacteria 3704152
176 2984579225 2984576629 Bacteria 4248407
177 3002999972 3002998708 Bacteria 11715108
178 8046355540 8046352972 Bacteria 3613806
179 8054709201 8054704163 Bacteria 7247792
180 8054728599 8054727385 Bacteria 7558670
181 8056214568 8056207758 Bacteria 8639239
182 JGI24737J22298_10012135
183 rootL2_10307164
184 JGI25407J50210_10007479
185 Ga0070680_100046684
186 Ga0070682_100250792
187 Ga0070682_100304372
188 Ga0070692_10200203
189 Ga0070659_100080244
190 Ga0070667_100051174
191 Ga0070709_10361796
192 Ga0070714_100259354
193 Ga0070710_10139031
194 Ga0070678_100337287
195 Ga0070662_100260208
196 Ga0070681_10001779
197 Ga0070679_100000354
198 Ga0070679_100364478
199 Ga0070684_100032013
200 Ga0068855_100650325
201 Ga0068852_100039386
202 Ga0068862_100378891
203 Ga0081455_10003707
204 Ga0081538_10000050
205 Ga0081538_10107686
206 Ga0081539_10001776
207 Ga0070717_10007464
208 Ga0070717_10295032
209 Ga0075368_10039212
210 Ga0075364_10054732
211 Ga0075432_10001737
212 Ga0070716_100056853
213 Ga0070712_100126887
214 Ga0075367_10020829
215 Ga0075428_100031299
216 Ga0075430_100125996
217 Ga0075431_100095680
218 Ga0075433_10009847
219 Ga0075433_10019172
220 Ga0075434_100008348
221 Ga0075434_100070609
222 Ga0075429_100016737
223 Ga0075436_100003127
224 Ga0075435_100002132
225 Ga0075435_100246800
226 Ga0111539_10000537
227 Ga0114129_10060748
228 Ga0114129_10252523
229 Ga0105238_10175309
230 Ga0105239_10378929
231 Ga0105246_10435003
232 Ga0157322_1001108
233 Ga0157370_10087992
234 Ga0157369_10133333
235 Ga0157369_10353135
236 Ga0163162_10122993
237 Ga0157372_10220670
238 Ga0157375_10561888
239 Ga0157375_10880663
240 Ga0163163_10480971
241 Ga0206353_10951250
242 Ga0228598_1012556
243 Ga0207705_10067591
244 Ga0207707_10004297
245 Ga0207660_10041615
246 Ga0207652_10000964
247 Ga0207652_10173874
248 Ga0207700_10059056
249 Ga0207700_10142075
250 Ga0207700_10178013
251 Ga0207664_10111072
252 Ga0207690_10432718
253 Ga0207706_10007793
254 Ga0207667_10058724
255 Ga0207667_10788322
256 Ga0207658_10018438
257 Ga0207658_10053865
258 Ga0207658_10064223
259 Ga0207639_10276990
260 Ga0207678_10001092
261 Ga0207678_10248684
262 Ga0207702_10038803
263 Ga0207674_10091265
264 Ga0207698_10088364
265 Ga0207428_10002359
266 Ga0207428_10006298
267 Ga0265318_10049040
268 Ga0265338_10112098
269 Ga0265320_10057374
270 Ga0265340_10001474
271 Ga0307408_100002815
272 Ga0307406_10000019
273 Ga0307409_100000024
274 Ga0307416_100000040
275 Ga0307416_100286131
276 Ga0307414_10369665
277 Ga0307411_10061758
278 Ga0307415_100001970
279 Ga0373932_0044967
280 Ga0373957_0027663
281 Ga0373942_0000227
282 Ga0373962_0000297
283 Ga0373937_0021804
284 Ga0439448_0031867
285 Ga0439450_026428
286 Ga0439455_0022759
287 Ga0439463_010366
288 Ga0439463_019323
289 Ga0439435_0023302
290 Ga0439440_0008569
291 Ga0466969_0019832
292 Ga0466970_0047754
293 Ga0466960_0000080
294 Ga0495651_0030079
295 Ga0495653_0002535
296 Ga0495580_0076194
297 Ga0495664_0044815
298 Ga0495608_0014715
299 Ga0495628_0088100
300 Ga0495652_0386508
301 Ga0495640_0041749
302 Ga0495645_0076822
303 Ga0495645_0344203
304 Ga0495667_0003096
305 Ga0495625_0130819
306 Ga0495635_0013958
307 Ga0495599_0035112
308 Ga0495623_0048141
309 Ga0495646_0056713
310 Ga0495671_0154496
311 Ga0495600_0084117
312 Ga0495604_0004205
313 Ga0495604_0032424
314 Ga0495674_0221778
315 Ga0495680_0002083
316 Ga0495675_0005710
317 Ga0495684_0028857
318 Ga0495602_0014557
319 Ga0495602_0242068
320 Ga0496102_0014101
321 Ga0496119_0001518
322 Ga0496122_0001454
323 Ga0496123_0000625
324 Ga0496126_0116384
325 Ga0501031_0037542
326 Ga0501034_0075798
327 Ga0501038_0215182
328 Ga0501046_0075668
329 Ga0501070_0002051
330 Ga0501070_0340149
331 Ga0501073_0086460
332 nmdc:mga0yw44_99313_c1
333 nmdc:mga04h51_48741_c1
334 nmdc:mga06r32_68440_c1
335 nmdc:mga08y16_2871_c1
336 nmdc:mga0n895_110187_c1
337 nmdc:mga0n895_14772_c1
338 nmdc:mga08x19_2468_c1
339 nmdc:mga0a205_116_c3
340 nmdc:mga0a205_7312_c1
341 Ga0500593_000100
342 Ga0590075_009823
343 2939659973
344 2676490776
345 2816422593
346 2819745874
347 2819746034
348 2821271332
349 2856743933
350 2870625219
351 2891566970
352 2895437216
353 2895662617
354 2902797854
355 2917738090
356 2919398875
357 2984579225
358 3002999972
359 8046355540
360 8054709201
361 8054728599
362 8056214568

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01261

AP_endonuc_2

Xylose isomerase-like TIM barrel

49

297

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7vpf-assembly1.cif.gz_B crystal structure of a novel putative sugar isomerase from the psychrophilic bacterium paenibacillus sp. r4 0.9709 2 270
3ju2-assembly1.cif.gz_A crystal structure of protein smc04130 from sinorhizobium meliloti 1021 0.9623 3 270
7vpf-assembly1.cif.gz_B crystal structure of a novel putative sugar isomerase from the psychrophilic bacterium paenibacillus sp. r4 0.9498 2 270
3ju2-assembly1.cif.gz_A crystal structure of protein smc04130 from sinorhizobium meliloti 1021 0.9484 3 270
1i6n-assembly1.cif.gz_A 1.8 a crystal structure of ioli protein with a binding zinc atom 0.8531 3 270
ID Description Score Start End Superfamily
3qc0A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.9618 3 269 3.20.20.150
3qc0A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.9442 3 269 3.20.20.150
af_P45541_1_270_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8465 3 268 3.20.20.150
1i60A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8412 4 270 3.20.20.150
af_Q59009_1_251_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8411 3 271 3.20.20.150
ID Description Score Start End GO Terms
AF-A0A6B3I397-F1-model_v4 Sugar phosphate isomerase/epimerase 0.9969 69 251 GO:0016853
AF-U2RL87-F1-model_v4 Xylose isomerase-like TIM barrel domain-containing protein 0.9949 109 271
AF-A0A7W1FUY9-F1-model_v4 Sugar phosphate isomerase/epimerase 0.994 151 270 GO:0016853
AF-A0A1I6U4Z6-F1-model_v4 Sugar phosphate isomerase/epimerase 0.9938 3 269 GO:0016853
AF-A0A1H4XI98-F1-model_v4 Sugar phosphate isomerase/epimerase 0.9937 3 270 GO:0016853

Map