F278027

General Info

Members Datasets Scaffolds Average Seq Length
181 127 362 379

Family's Representative Sequence

Representative Sequence 3300048907|Ga0496104_0023232|Ga0496104_0023232_3010_4191
Length 379
Sequence LLVLEDGRTFRGEAYGAEGETFGEAVFATGMTGYQETLTDPSYHRQVVVMTAPHIGNTGLNDEDPESSRIWVAGYVVRDPARVPSSWRSRRSLDSALREQGVVGISGIDRVGISTTEADPAVLLARVRVSGQMAGANLSAEVSTAEPYVVPAVGATRFRVAAVDLGIKANTPRMMAARGIETHVLPATSTLDDVLAVSPDGLFFSNGPGDPAATTSQVDLLRGALDRGIPYFGICFGNQLFGRALGFETYKLTYGHRGINQPVMDRTTGKVEVTAHNHGFAVRAPLDAATSTSYGDVTVSHVCLNDDVVEGLELRRDGRLVAFSVQYHPEAAAGPHDAAYLFDRFCDLMAVETRQIVPRDAHEKRASTDDLARLNGEGV

Samples

Sample ID Description Type Environment
1 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
15 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
19 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
20 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
21 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
22 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
23 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
26 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
27 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
28 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
29 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
30 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
31 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
47 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
48 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
49 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
50 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
51 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
52 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
53 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
54 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
55 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
56 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
57 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
58 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
59 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
60 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
61 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
62 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
63 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
64 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
65 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
66 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
67 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
68 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
69 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
70 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
71 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
72 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
73 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
74 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
75 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
76 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
80 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
81 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
82 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
83 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
86 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
87 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
100 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
101 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
102 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
103 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
104 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
105 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
108 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
109 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
110 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
111 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
112 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
113 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
114 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
115 2643221576 Nocardioides sp. Root614 Isolate Unclassified
116 2643221590 Nocardioides sp. Root682 Isolate Unclassified
117 2643221615 Nocardioides sp. Root224 Isolate Unclassified
118 2643221617 Nocardioides sp. Root79 Isolate Unclassified
119 2643221620 Nocardioides sp. Root240 Isolate Unclassified
120 2643221641 Nocardioides sp. Root122 Isolate Unclassified
121 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
122 2738541305 Nocardioides sp. CF167 Isolate Unclassified
123 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
124 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
125 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
126 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
127 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.16
Metatranscriptomes 1.66
Isolates 7.18

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.42
Nodule 0.55
Rhizoplane 6.08
Rhizosphere 81.77
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496104_0023232 3300048907 Bacteria 5701
2 Ga0070658_10014648 3300005327 Bacteria 6292
3 Ga0070658_10016186 3300005327 Bacteria 5965
4 Ga0070683_100066901 3300005329 Bacteria 3347
5 Ga0070683_100077660 3300005329 Bacteria 3105
6 Ga0070683_100102257 3300005329 Bacteria 2699
7 Ga0070682_100025251 3300005337 Bacteria 3544
8 Ga0070660_100074987 3300005339 Bacteria 2648
9 Ga0070692_10014226 3300005345 Bacteria 3731
10 Ga0070692_10051205 3300005345 Bacteria 2146
11 Ga0070713_100362060 3300005436 Bacteria 1348
12 Ga0070678_100132036 3300005456 Bacteria 1985
13 Ga0070681_10143765 3300005458 Bacteria 2315
14 Ga0070681_10296788 3300005458 Bacteria 1526
15 Ga0070679_100064965 3300005530 Bacteria 3637
16 Ga0070665_100000703 3300005548 Bacteria 44593
17 Ga0068855_100013072 3300005563 Bacteria 10012
18 Ga0068855_100078285 3300005563 Bacteria 3835
19 Ga0068857_100038693 3300005577 Bacteria 4223
20 Ga0068864_100047343 3300005618 Bacteria 3693
21 Ga0068858_100036701 3300005842 Bacteria 4544
22 Ga0068860_100000696 3300005843 Bacteria 38651
23 Ga0081455_10027372 3300005937 Bacteria 5224
24 Ga0075365_10001095 3300006038 Bacteria 11787
25 Ga0075363_100005084 3300006048 Bacteria 5816
26 Ga0068865_100017779 3300006881 Bacteria 4578
27 Ga0105241_10047979 3300009174 Bacteria 3248
28 Ga0105248_10000195 3300009177 Bacteria 70232
29 Ga0105246_10040357 3300011119 Bacteria 3149
30 Ga0105246_10079928 3300011119 Bacteria 2326
31 Ga0157369_10106499 3300013105 Bacteria 2984
32 Ga0157369_10359980 3300013105 Bacteria 1511
33 Ga0157372_10004584 3300013307 Bacteria 14695
34 Ga0157375_10153783 3300013308 Bacteria 2438
35 Ga0163163_10107397 3300014325 Bacteria 2818
36 Ga0163163_10122584 3300014325 Bacteria 2634
37 Ga0157379_10000014 3300014968 Bacteria 105963
38 Ga0157379_10193992 3300014968 Bacteria 1835
39 Ga0206351_10078551 3300020077 Bacteria 1247
40 Ga0206353_10205950 3300020082 Bacteria 3329
41 Ga0206353_11800819 3300020082 Bacteria 4193
42 Ga0207705_10012847 3300025909 Bacteria 6045
43 Ga0207705_10036933 3300025909 Bacteria 3496
44 Ga0207705_10037404 3300025909 Bacteria 3473
45 Ga0207707_10119950 3300025912 Bacteria 2299
46 Ga0207657_10058682 3300025919 Bacteria 3310
47 Ga0207657_10178522 3300025919 Bacteria 1717
48 Ga0207652_10065079 3300025921 Bacteria 3156
49 Ga0207652_10079018 3300025921 Bacteria 2873
50 Ga0207704_10075775 3300025938 Bacteria 2153
51 Ga0207711_10000402 3300025941 Bacteria 45699
52 Ga0207661_10092292 3300025944 Bacteria 2524
53 Ga0207661_10120335 3300025944 Bacteria 2234
54 Ga0207667_10017557 3300025949 Bacteria 8048
55 Ga0207667_10035005 3300025949 Bacteria 5389
56 Ga0207667_10051434 3300025949 Bacteria 4343
57 Ga0207703_10000083 3300026035 Bacteria 110315
58 Ga0207703_10058860 3300026035 Bacteria 3138
59 Ga0207708_10132992 3300026075 Bacteria 1946
60 Ga0207674_10026273 3300026116 Bacteria 6189
61 Ga0207683_10076041 3300026121 Bacteria 2973
62 Ga0207698_10109720 3300026142 Bacteria 2309
63 Ga0268264_10000697 3300028381 Bacteria 39075
64 Ga0268264_10205876 3300028381 Bacteria 1803
65 Ga0265327_10083667 3300031251 Bacteria 1570
66 Ga0307408_100067124 3300031548 Bacteria 2637
67 Ga0316575_10000921 3300031665 Bacteria 9048
68 Ga0316576_10000047 3300031727 Bacteria 37553
69 Ga0316578_10000940 3300031728 Bacteria 11068
70 Ga0307405_10023169 3300031731 Bacteria 3524
71 Ga0307413_10194558 3300031824 Bacteria 1459
72 Ga0307410_10032225 3300031852 Bacteria 3370
73 Ga0307410_10057912 3300031852 Bacteria 2640
74 Ga0307410_10070280 3300031852 Bacteria 2424
75 Ga0307407_10011792 3300031903 Bacteria 4178
76 Ga0307407_10013946 3300031903 Bacteria 3917
77 Ga0307409_100022671 3300031995 Bacteria 4331
78 Ga0307409_100091223 3300031995 Bacteria 2496
79 Ga0307409_100159357 3300031995 Bacteria 1971
80 Ga0307416_100120114 3300032002 Bacteria 2339
81 Ga0307414_10084488 3300032004 Bacteria 2335
82 Ga0307411_10014212 3300032005 Bacteria 4422
83 Ga0307411_10094472 3300032005 Bacteria 2096
84 Ga0307415_100014429 3300032126 Bacteria 4644
85 Ga0316583_10002273 3300032133 Bacteria 6618
86 Ga0316585_10005694 3300032137 Bacteria 3525
87 Ga0316580_10004910 3300032139 Bacteria 3887
88 Ga0316582_0004554 3300036647 Bacteria 7019
89 Ga0316584_0000644 3300036712 Bacteria 18952
90 Ga0395898_0045692 3300037466 Bacteria 4304
91 Ga0316581_0000290 3300037588 Bacteria 8864
92 Ga0436364_0080228 3300037853 Bacteria 9309
93 Ga0395901_0042589 3300038443 Bacteria 4708
94 Ga0439445_0003584 3300042004 Bacteria 3480
95 Ga0439434_0007494 3300042435 Bacteria 3197
96 Ga0466966_0048174 3300044684 Bacteria 2715
97 Ga0466961_0065503 3300044693 Bacteria 2309
98 Ga0466963_0030582 3300044694 Bacteria 3476
99 Ga0466971_0033421 3300044719 Bacteria 2305
100 Ga0466970_0006535 3300044765 Bacteria 5829
101 Ga0466957_0026928 3300044842 Bacteria 3413
102 Ga0466957_0037685 3300044842 Bacteria 2911
103 Ga0466957_0135312 3300044842 Bacteria 1583
104 Ga0466960_0000241 3300044901 Bacteria 18889
105 Ga0466960_0056628 3300044901 Bacteria 1909
106 Ga0466959_0050228 3300045049 Bacteria 3062
107 Ga0466959_0051533 3300045049 Bacteria 3018
108 Ga0466967_0001220 3300045976 Bacteria 14498
109 Ga0466967_0058025 3300045976 Bacteria 3419
110 Ga0466967_0084338 3300045976 Bacteria 2875
111 Ga0466967_0337121 3300045976 Bacteria 1457
112 Ga0495608_0060945 3300046511 Bacteria 2482
113 Ga0495667_0062872 3300046559 Bacteria 2432
114 Ga0496102_0295825 3300048905 Bacteria 1526
115 Ga0496107_0094674 3300048910 Bacteria 2185
116 Ga0496108_0044823 3300048911 Bacteria 3693
117 Ga0496108_0168049 3300048911 Bacteria 1897
118 Ga0496109_0136857 3300048912 Bacteria 2289
119 Ga0496110_0064887 3300048913 Bacteria 3228
120 Ga0496110_0080572 3300048913 Bacteria 2901
121 Ga0496111_0033283 3300048914 Bacteria 3675
122 Ga0496111_0053157 3300048914 Bacteria 2926
123 Ga0496114_0092284 3300048917 Bacteria 2572
124 Ga0501031_0032111 3300049568 Bacteria 3424
125 Ga0501031_0072773 3300049568 Bacteria 2237
126 Ga0501032_0007920 3300049569 Bacteria 7737
127 Ga0501032_0090768 3300049569 Bacteria 2027
128 Ga0501033_0015639 3300049570 Bacteria 5753
129 Ga0501034_0020786 3300049571 Bacteria 6699
130 Ga0501034_0055367 3300049571 Bacteria 3991
131 Ga0501037_0001412 3300049573 Bacteria 17611
132 Ga0501038_0010511 3300049574 Bacteria 8465
133 Ga0501038_0024058 3300049574 Bacteria 5437
134 Ga0501042_0082575 3300049578 Bacteria 2303
135 Ga0501043_0055388 3300049579 Bacteria 3115
136 Ga0501046_0000737 3300049580 Bacteria 31648
137 Ga0501046_0015859 3300049580 Bacteria 6323
138 Ga0501047_0028168 3300049581 Bacteria 5413
139 Ga0501047_0123947 3300049581 Bacteria 2464
140 Ga0501048_0002641 3300049582 Bacteria 13700
141 Ga0501067_0000178 3300049583 Bacteria 35851
142 Ga0501067_0009034 3300049583 Bacteria 5520
143 Ga0501070_0009290 3300049586 Bacteria 8315
144 Ga0501070_0013159 3300049586 Bacteria 6972
145 Ga0501070_0021215 3300049586 Bacteria 5452
146 Ga0501071_0030240 3300049587 Bacteria 3829
147 Ga0501072_0001472 3300049588 Bacteria 17651
148 Ga0501072_0011530 3300049588 Bacteria 6755
149 Ga0501074_0000666 3300049590 Bacteria 21414
150 Ga0501074_0013732 3300049590 Bacteria 5887
151 Ga0501080_0001860 3300049742 Bacteria 18123
152 Ga0501080_0025757 3300049742 Bacteria 5463
153 Ga0501080_0036527 3300049742 Bacteria 4585
154 Ga0501035_0015126 3300049822 Bacteria 7121
155 Ga0501035_0022498 3300049822 Bacteria 5789
156 Ga0501044_0009310 3300049823 Bacteria 10718
157 Ga0501044_0052771 3300049823 Bacteria 4186
158 Ga0501044_0146436 3300049823 Bacteria 2347
159 Ga0501045_0148768 3300049824 Bacteria 1742
160 nmdc:mga03n38_5972_c1 3300050490 Bacteria 4194
161 nmdc:mga0yw44_3474_c1 3300050492 Bacteria 7002
162 nmdc:mga0yw44_79762_c1 3300050492 Bacteria 2049
163 Ga0500644_0000309 3300053088 Bacteria 25681
164 Ga0500556_0000979 3300053104 Bacteria 15172
165 Ga0500620_013309 3300053155 Bacteria 2266
166 Ga0501084_0019329 3300054114 Bacteria 5676
167 Ga0501082_0013422 3300060353 Bacteria 7042
168 Ga0501082_0026494 3300060353 Bacteria 4997
169 2643891665 2643221576 Bacteria 5214352
170 2643960713 2643221590 Bacteria 5214697
171 2644093932 2643221615 Bacteria 5487866
172 2644102338 2643221617 Bacteria 5139111
173 2644115562 2643221620 Bacteria 5134593
174 2644230343 2643221641 Bacteria 4490190
175 2644323776 2643221657 Bacteria 5490246
176 2738868117 2738541305 Bacteria 4910150
177 2774392325 2773857762 Bacteria 5971770
178 2812333135 2811994874 Bacteria 5367947
179 2812351742 2811994878 Bacteria 5992952
180 2891970630 2891968417 Bacteria 5821697
181 8054611183 8054609563 Bacteria 5170090
182 Ga0496104_0023232
183 Ga0070658_10014648
184 Ga0070658_10016186
185 Ga0070683_100066901
186 Ga0070683_100077660
187 Ga0070683_100102257
188 Ga0070682_100025251
189 Ga0070660_100074987
190 Ga0070692_10014226
191 Ga0070692_10051205
192 Ga0070713_100362060
193 Ga0070678_100132036
194 Ga0070681_10143765
195 Ga0070681_10296788
196 Ga0070679_100064965
197 Ga0070665_100000703
198 Ga0068855_100013072
199 Ga0068855_100078285
200 Ga0068857_100038693
201 Ga0068864_100047343
202 Ga0068858_100036701
203 Ga0068860_100000696
204 Ga0081455_10027372
205 Ga0075365_10001095
206 Ga0075363_100005084
207 Ga0068865_100017779
208 Ga0105241_10047979
209 Ga0105248_10000195
210 Ga0105246_10040357
211 Ga0105246_10079928
212 Ga0157369_10106499
213 Ga0157369_10359980
214 Ga0157372_10004584
215 Ga0157375_10153783
216 Ga0163163_10107397
217 Ga0163163_10122584
218 Ga0157379_10000014
219 Ga0157379_10193992
220 Ga0206351_10078551
221 Ga0206353_10205950
222 Ga0206353_11800819
223 Ga0207705_10012847
224 Ga0207705_10036933
225 Ga0207705_10037404
226 Ga0207707_10119950
227 Ga0207657_10058682
228 Ga0207657_10178522
229 Ga0207652_10065079
230 Ga0207652_10079018
231 Ga0207704_10075775
232 Ga0207711_10000402
233 Ga0207661_10092292
234 Ga0207661_10120335
235 Ga0207667_10017557
236 Ga0207667_10035005
237 Ga0207667_10051434
238 Ga0207703_10000083
239 Ga0207703_10058860
240 Ga0207708_10132992
241 Ga0207674_10026273
242 Ga0207683_10076041
243 Ga0207698_10109720
244 Ga0268264_10000697
245 Ga0268264_10205876
246 Ga0265327_10083667
247 Ga0307408_100067124
248 Ga0316575_10000921
249 Ga0316576_10000047
250 Ga0316578_10000940
251 Ga0307405_10023169
252 Ga0307413_10194558
253 Ga0307410_10032225
254 Ga0307410_10057912
255 Ga0307410_10070280
256 Ga0307407_10011792
257 Ga0307407_10013946
258 Ga0307409_100022671
259 Ga0307409_100091223
260 Ga0307409_100159357
261 Ga0307416_100120114
262 Ga0307414_10084488
263 Ga0307411_10014212
264 Ga0307411_10094472
265 Ga0307415_100014429
266 Ga0316583_10002273
267 Ga0316585_10005694
268 Ga0316580_10004910
269 Ga0316582_0004554
270 Ga0316584_0000644
271 Ga0395898_0045692
272 Ga0316581_0000290
273 Ga0436364_0080228
274 Ga0395901_0042589
275 Ga0439445_0003584
276 Ga0439434_0007494
277 Ga0466966_0048174
278 Ga0466961_0065503
279 Ga0466963_0030582
280 Ga0466971_0033421
281 Ga0466970_0006535
282 Ga0466957_0026928
283 Ga0466957_0037685
284 Ga0466957_0135312
285 Ga0466960_0000241
286 Ga0466960_0056628
287 Ga0466959_0050228
288 Ga0466959_0051533
289 Ga0466967_0001220
290 Ga0466967_0058025
291 Ga0466967_0084338
292 Ga0466967_0337121
293 Ga0495608_0060945
294 Ga0495667_0062872
295 Ga0496102_0295825
296 Ga0496107_0094674
297 Ga0496108_0044823
298 Ga0496108_0168049
299 Ga0496109_0136857
300 Ga0496110_0064887
301 Ga0496110_0080572
302 Ga0496111_0033283
303 Ga0496111_0053157
304 Ga0496114_0092284
305 Ga0501031_0032111
306 Ga0501031_0072773
307 Ga0501032_0007920
308 Ga0501032_0090768
309 Ga0501033_0015639
310 Ga0501034_0020786
311 Ga0501034_0055367
312 Ga0501037_0001412
313 Ga0501038_0010511
314 Ga0501038_0024058
315 Ga0501042_0082575
316 Ga0501043_0055388
317 Ga0501046_0000737
318 Ga0501046_0015859
319 Ga0501047_0028168
320 Ga0501047_0123947
321 Ga0501048_0002641
322 Ga0501067_0000178
323 Ga0501067_0009034
324 Ga0501070_0009290
325 Ga0501070_0013159
326 Ga0501070_0021215
327 Ga0501071_0030240
328 Ga0501072_0001472
329 Ga0501072_0011530
330 Ga0501074_0000666
331 Ga0501074_0013732
332 Ga0501080_0001860
333 Ga0501080_0025757
334 Ga0501080_0036527
335 Ga0501035_0015126
336 Ga0501035_0022498
337 Ga0501044_0009310
338 Ga0501044_0052771
339 Ga0501044_0146436
340 Ga0501045_0148768
341 nmdc:mga03n38_5972_c1
342 nmdc:mga0yw44_3474_c1
343 nmdc:mga0yw44_79762_c1
344 Ga0500644_0000309
345 Ga0500556_0000979
346 Ga0500620_013309
347 Ga0501084_0019329
348 Ga0501082_0013422
349 Ga0501082_0026494
350 2643891665
351 2643960713
352 2644093932
353 2644102338
354 2644115562
355 2644230343
356 2644323776
357 2738868117
358 2774392325
359 2812333135
360 2812351742
361 2891970630
362 8054611183

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00988

CPSase_sm_chain

Carbamoyl-phosphate synthase small chain, CPSase domain

2

135

0.98

PF00117

GATase

Glutamine amidotransferase class-I

161

348

0.95

PF07722

Peptidase_C26

Peptidase C26

203

330

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
1c30-assembly1.cif.gz_B crystal structure of carbamoyl phosphate synthetase: small subunit mutation c269s 0.9195 12 376
1jdb-assembly1.cif.gz_F carbamoyl phosphate synthetase from escherichia coli 0.9165 12 378
1a9x-assembly1.cif.gz_B carbamoyl phosphate synthetase: caught in the act of glutamine hydrolysis 0.9132 12 378
1cs0-assembly4.cif.gz_B crystal structure of carbamoyl phosphate synthetase complexed at cys269 in the small subunit with the tetrahedral mimic l-glutamate gamma-semialdehyde 0.9125 12 378
1t36-assembly1.cif.gz_B crystal structure of e. coli carbamoyl phosphate synthetase small subunit mutant c248d complexed with uridine 5'-monophosphate 0.9125 12 378
ID Description Score Start End Superfamily
af_P9WPK5_156_373_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9612 163 376 3.40.50.880
af_P9WPK5_156_373_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9397 163 376 3.40.50.880
af_P9WPK5_1_155_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.9367 12 159 3.50.30.20
af_C6TIQ8_51_199_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.9304 14 159 3.50.30.20
af_P0A6F1_2_151_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.927 12 159 3.50.30.20
ID Description Score Start End GO Terms
AF-A0A3D8NBP3-F1-model_v4 deleted 0.9896 170 255
AF-A0A538EM37-F1-model_v4 Carbamoyl phosphate synthase small chain (EC 6.3.5.5) (Carbamoyl phosphate synthetase glutamine chain) 0.9724 11 376 GO:0004088
GO:0004359
GO:0005524
GO:0006207
GO:0006526
GO:0006541
GO:0044205
AF-A0A7K0TGQ0-F1-model_v4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) 0.9722 176 376 GO:0005524
GO:0006221
GO:0006541
GO:0016874
AF-A0A810MLL8-F1-model_v4 deleted 0.9721 12 376
AF-A0A8B0E873-F1-model_v4 deleted 0.9714 11 376

Map