F277373

General Info

Members Datasets Scaffolds Average Seq Length
181 118 363 284

Family's Representative Sequence

Representative Sequence 3300013105|Ga0157369_10126793|Ga0157369_101267933
Length 306
Sequence VGAAQGPRRPGQLLRVLIAGANGQLGQDLQKAFAGHTVTALGRAELDVTDRDAVIAAVAGHDAVVNASAYTKVDDAETHEDEAYAINALGTENLAVAAAEAGAKYVTVSTDYVFDGHATEPYAEDTPRDPINAYGRTKAAGEELALAAHPDGTYVVRTAWLYGAGGANFARTMVKLAQTHETVSVVADQLGQPTWTGDLADRIVALLESDAPSGVYHGTNSGQASWFEFAKAVFSAAGLNPDRVTPTDSATFVRPAPRPSYSVLGHEAWTRAGLAPLRSWQEALADAARHGVLELETDDDTQRGGR

Samples

Sample ID Description Type Environment
1 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
6 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
7 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
8 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
9 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
10 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
32 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
55 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
56 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
57 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
58 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
59 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
60 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
61 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
62 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
63 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
64 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
65 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
66 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
67 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
68 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
69 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
70 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
71 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
72 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
73 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
74 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
75 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
76 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
77 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
78 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
89 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
90 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
91 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
92 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
93 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
97 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
98 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
99 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
100 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
101 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
102 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
103 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
104 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
105 2643221616 Leifsonia sp. Root227 Isolate Unclassified
106 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
107 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
108 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
109 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
110 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
111 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
112 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
113 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
114 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
115 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
116 2928153084 Leifsonia sp. 563 Isolate Unclassified
117 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
118 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.61
Metatranscriptomes 1.66
Isolates 7.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.02
Nodule 0
Rhizoplane 1.66
Rhizosphere 72.93
Stem 0
Stem Tuber 0.55
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157369_10126793 3300013105 Bacteria 2706
2 JGI24735J21928_10006200 3300002067 Bacteria 3949
3 rootH1_10068639 3300003316 Bacteria 2919
4 rootH1_10068639 3300003323 Bacteria 5313
5 Ga0006562J51391_1052514 3300003578 Bacteria 2100
6 Ga0055539_1000027 3300003752 Bacteria 258020
7 Ga0055533_1000020 3300003756 Bacteria 353998
8 Ga0055525_1000151 3300003759 Bacteria 94158
9 Ga0055527_1000005 3300003760 Bacteria 504776
10 Ga0055542_1000006 3300003762 Bacteria 504776
11 Ga0055529_1000400 3300003763 Bacteria 46269
12 Ga0070658_10006153 3300005327 Bacteria 9731
13 Ga0070658_10032513 3300005327 Bacteria 4194
14 Ga0070660_100027879 3300005339 Bacteria 4220
15 Ga0070671_100153049 3300005355 Bacteria 1948
16 Ga0070671_100243809 3300005355 Bacteria 1526
17 Ga0070659_100013075 3300005366 Bacteria 6172
18 Ga0070667_100063350 3300005367 Bacteria 3133
19 Ga0070685_10018839 3300005466 Bacteria 3718
20 Ga0070672_100001152 3300005543 Bacteria 16164
21 Ga0068855_100002245 3300005563 Bacteria 23878
22 Ga0068855_100179630 3300005563 Bacteria 2393
23 Ga0068855_100713927 3300005563 Bacteria 1072
24 Ga0068852_100097873 3300005616 Bacteria 2640
25 Ga0068859_100338371 3300005617 Bacteria 1599
26 Ga0075430_100005229 3300006846 Bacteria 10943
27 Ga0075431_100004317 3300006847 Bacteria 13931
28 Ga0075429_100058034 3300006880 Bacteria 3371
29 Ga0097620_100338357 3300006931 Bacteria 1599
30 Ga0105240_10103336 3300009093 Bacteria 3462
31 Ga0157373_10120948 3300013100 Bacteria 1840
32 Ga0157370_10001023 3300013104 Bacteria 35200
33 Ga0157369_10398262 3300013105 Bacteria 1428
34 Ga0157369_10484986 3300013105 Bacteria 1279
35 Ga0157374_10065232 3300013296 Bacteria 3419
36 Ga0157372_10603829 3300013307 Bacteria 1279
37 Ga0163163_10003889 3300014325 Bacteria 12729
38 Ga0157379_10052959 3300014968 Bacteria 3625
39 Ga0206353_10890501 3300020082 Bacteria 1849
40 Ga0206353_11271241 3300020082 Bacteria 6065
41 Ga0209566_100043 3300025225 Bacteria 266609
42 Ga0209674_100001 3300025226 Bacteria 4013750
43 Ga0209672_100003 3300025228 Bacteria 1560476
44 Ga0209147_101119 3300025229 Bacteria 11089
45 Ga0209563_100001 3300025230 Bacteria 4013775
46 Ga0209563_100250 3300025230 Bacteria 25212
47 Ga0209258_102291 3300025242 Bacteria 5105
48 Ga0209677_100001 3300025253 Bacteria 4013787
49 Ga0209677_104486 3300025253 Bacteria 4002
50 Ga0209148_1000004 3300025254 Bacteria 1844481
51 Ga0209455_1000046 3300025272 Bacteria 382681
52 Ga0209455_1002622 3300025272 Bacteria 6821
53 Ga0207680_10176343 3300025903 Bacteria 1443
54 Ga0207705_10000001 3300025909 Bacteria 2061880
55 Ga0207705_10008960 3300025909 Bacteria 7286
56 Ga0207695_10147757 3300025913 Bacteria 2292
57 Ga0207657_10000531 3300025919 Bacteria 40498
58 Ga0207644_10224882 3300025931 Bacteria 1489
59 Ga0207690_10003414 3300025932 Bacteria 9485
60 Ga0207690_10026938 3300025932 Bacteria 3627
61 Ga0207691_10033394 3300025940 Bacteria 4790
62 Ga0207711_10000940 3300025941 Bacteria 28075
63 Ga0207667_10000467 3300025949 Bacteria 54059
64 Ga0207667_10006145 3300025949 Bacteria 14589
65 Ga0207667_10028231 3300025949 Bacteria 6097
66 Ga0207639_10472466 3300026041 Bacteria 1142
67 Ga0207678_10526911 3300026067 Bacteria 1032
68 Ga0207641_10287336 3300026088 Bacteria 1549
69 Ga0373955_0189983 3300035172 Bacteria 1221
70 Ga0373937_0008225 3300036401 Bacteria 9058
71 Ga0395899_0003820 3300037312 Bacteria 11892
72 Ga0395899_0044786 3300037312 Bacteria 3296
73 Ga0395900_0006931 3300037418 Bacteria 11757
74 Ga0395900_0294056 3300037418 Bacteria 1612
75 Ga0395900_0586691 3300037418 Bacteria 1056
76 Ga0395898_0000098 3300037466 Bacteria 229806
77 Ga0395901_0095363 3300038443 Bacteria 3118
78 Ga0466972_0012196 3300044658 Bacteria 4319
79 Ga0466972_0012403 3300044658 Bacteria 4282
80 Ga0466965_0010599 3300044683 Bacteria 4306
81 Ga0466966_0094518 3300044684 Bacteria 1853
82 Ga0466961_0024154 3300044693 Bacteria 3909
83 Ga0466968_0070067 3300044735 Bacteria 1525
84 Ga0466970_0006048 3300044765 Bacteria 6035
85 Ga0466970_0135489 3300044765 Bacteria 1354
86 Ga0466959_0069211 3300045049 Bacteria 2557
87 Ga0466958_0029948 3300045836 Bacteria 3229
88 Ga0466958_0072593 3300045836 Bacteria 2108
89 Ga0466967_0364494 3300045976 Bacteria 1401
90 Ga0495590_0000095 3300046457 Bacteria 54200
91 Ga0496102_0118667 3300048905 Bacteria 2469
92 Ga0496105_0004029 3300048908 Bacteria 10994
93 Ga0496114_0275595 3300048917 Bacteria 1482
94 Ga0496117_0003412 3300048920 Bacteria 18491
95 Ga0496117_0009514 3300048920 Bacteria 9029
96 Ga0496118_0005277 3300048921 Bacteria 14751
97 Ga0496119_0000552 3300048922 Bacteria 51035
98 Ga0496120_0094880 3300048923 Bacteria 1587
99 Ga0496121_0000025 3300048924 Bacteria 453467
100 Ga0501033_0000716 3300049570 Bacteria 30429
101 Ga0501033_0012699 3300049570 Bacteria 6422
102 Ga0501033_0023157 3300049570 Bacteria 4684
103 Ga0501033_0142808 3300049570 Bacteria 1731
104 Ga0501034_0012879 3300049571 Bacteria 8625
105 Ga0501034_0029771 3300049571 Bacteria 5550
106 Ga0501034_0034355 3300049571 Bacteria 5140
107 Ga0501034_0109324 3300049571 Bacteria 2756
108 Ga0501034_0113252 3300049571 Bacteria 2703
109 Ga0501034_0123455 3300049571 Bacteria 2575
110 Ga0501034_0144631 3300049571 Bacteria 2355
111 Ga0501034_0159738 3300049571 Bacteria 2226
112 Ga0501034_0160957 3300049571 Bacteria 2216
113 Ga0501034_0188666 3300049571 Bacteria 2024
114 Ga0501034_0353188 3300049571 Bacteria 1398
115 Ga0501034_0434814 3300049571 Bacteria 1231
116 Ga0501034_0531696 3300049571 Bacteria 1086
117 Ga0501036_0073701 3300049572 Bacteria 2886
118 Ga0501037_0031327 3300049573 Bacteria 3926
119 Ga0501037_0165899 3300049573 Bacteria 1573
120 Ga0501037_0187709 3300049573 Bacteria 1464
121 Ga0501038_0011075 3300049574 Bacteria 8235
122 Ga0501038_0017355 3300049574 Bacteria 6506
123 Ga0501038_0060475 3300049574 Bacteria 3242
124 Ga0501038_0427903 3300049574 Bacteria 1020
125 Ga0501039_0038547 3300049575 Bacteria 3690
126 Ga0501042_0179525 3300049578 Bacteria 1527
127 Ga0501043_0008566 3300049579 Bacteria 8062
128 Ga0501043_0024664 3300049579 Bacteria 4716
129 Ga0501043_0153642 3300049579 Bacteria 1800
130 Ga0501043_0503603 3300049579 Bacteria 904
131 Ga0501046_0020615 3300049580 Bacteria 5449
132 Ga0501046_0075478 3300049580 Bacteria 2613
133 Ga0501046_0187880 3300049580 Bacteria 1542
134 Ga0501046_0315620 3300049580 Bacteria 1139
135 Ga0501047_0000910 3300049581 Bacteria 30244
136 Ga0501047_0111499 3300049581 Bacteria 2618
137 Ga0501047_0226843 3300049581 Bacteria 1722
138 Ga0501047_0230984 3300049581 Bacteria 1703
139 Ga0501047_0339704 3300049581 Bacteria 1339
140 Ga0501047_0597308 3300049581 Bacteria 925
141 Ga0501067_0134660 3300049583 Bacteria 1376
142 Ga0501070_0000050 3300049586 Bacteria 103310
143 Ga0501070_0002060 3300049586 Bacteria 17668
144 Ga0501070_0373013 3300049586 Bacteria 1156
145 Ga0501072_0015545 3300049588 Bacteria 5832
146 Ga0501073_0020403 3300049589 Bacteria 4780
147 Ga0501073_0078163 3300049589 Bacteria 2302
148 Ga0501080_0003641 3300049742 Bacteria 13594
149 Ga0501080_0161618 3300049742 Bacteria 2068
150 Ga0501083_0018738 3300049744 Bacteria 4821
151 Ga0501035_0103424 3300049822 Bacteria 2498
152 Ga0501035_0317098 3300049822 Bacteria 1310
153 Ga0501035_0362993 3300049822 Bacteria 1210
154 Ga0501035_0466848 3300049822 Bacteria 1042
155 Ga0501044_0048099 3300049823 Bacteria 4407
156 Ga0501044_0438987 3300049823 Bacteria 1213
157 Ga0501045_0222724 3300049824 Bacteria 1404
158 nmdc:mga0yw44_196741_c1 3300050492 Bacteria 1330
159 nmdc:mga06z11_220058_c1 3300050494 Bacteria 1109
160 nmdc:mga06z11_324671_c1 3300050494 Bacteria 918
161 Ga0500635_0001345 3300053080 Bacteria 5888
162 Ga0500559_0053599 3300053136 Bacteria 1785
163 Ga0500568_0000161 3300053139 Bacteria 57643
164 Ga0500568_0002744 3300053139 Bacteria 10200
165 Ga0500568_0003488 3300053139 Bacteria 8741
166 Ga0500588_0046165 3300053146 Bacteria 1338
167 Ga0500590_004732 3300053148 Bacteria 6465
168 Ga0500620_000282 3300053155 Bacteria 9868
169 2644095027 2643221616 Bacteria 4066575
170 2644197084 2643221635 Bacteria 2632343
171 2844841507 2844841374 Bacteria 3917147
172 2857736000 2857733635 Bacteria 3532004
173 2857737534 2857737099 Bacteria 3104305
174 2862994712 2862993130 Bacteria 3860849
175 2884764410 2884763398 Bacteria 4091164
176 2904503884 2904501621 Bacteria 3401437
177 2908676850 2908674828 Bacteria 3382763
178 2919057155 2919055335 Bacteria 3875751
179 2919527210 2919523602 Bacteria 3788128
180 2928154929 2928153084 Bacteria 4020257
181 2928501992 2928500415 Bacteria 3384541
182 8048747353 8048746797 Bacteria 3557226
183 Ga0157369_10126793
184 JGI24735J21928_10006200
185 rootH1_10068639
186 Ga0006562J51391_1052514
187 Ga0055539_1000027
188 Ga0055533_1000020
189 Ga0055525_1000151
190 Ga0055527_1000005
191 Ga0055542_1000006
192 Ga0055529_1000400
193 Ga0070658_10006153
194 Ga0070658_10032513
195 Ga0070660_100027879
196 Ga0070671_100153049
197 Ga0070671_100243809
198 Ga0070659_100013075
199 Ga0070667_100063350
200 Ga0070685_10018839
201 Ga0070672_100001152
202 Ga0068855_100002245
203 Ga0068855_100179630
204 Ga0068855_100713927
205 Ga0068852_100097873
206 Ga0068859_100338371
207 Ga0075430_100005229
208 Ga0075431_100004317
209 Ga0075429_100058034
210 Ga0097620_100338357
211 Ga0105240_10103336
212 Ga0157373_10120948
213 Ga0157370_10001023
214 Ga0157369_10398262
215 Ga0157369_10484986
216 Ga0157374_10065232
217 Ga0157372_10603829
218 Ga0163163_10003889
219 Ga0157379_10052959
220 Ga0206353_10890501
221 Ga0206353_11271241
222 Ga0209566_100043
223 Ga0209674_100001
224 Ga0209672_100003
225 Ga0209147_101119
226 Ga0209563_100001
227 Ga0209563_100250
228 Ga0209258_102291
229 Ga0209677_100001
230 Ga0209677_104486
231 Ga0209148_1000004
232 Ga0209455_1000046
233 Ga0209455_1002622
234 Ga0207680_10176343
235 Ga0207705_10000001
236 Ga0207705_10008960
237 Ga0207695_10147757
238 Ga0207657_10000531
239 Ga0207644_10224882
240 Ga0207690_10003414
241 Ga0207690_10026938
242 Ga0207691_10033394
243 Ga0207711_10000940
244 Ga0207667_10000467
245 Ga0207667_10006145
246 Ga0207667_10028231
247 Ga0207639_10472466
248 Ga0207678_10526911
249 Ga0207641_10287336
250 Ga0373955_0189983
251 Ga0373937_0008225
252 Ga0395899_0003820
253 Ga0395899_0044786
254 Ga0395900_0006931
255 Ga0395900_0294056
256 Ga0395900_0586691
257 Ga0395898_0000098
258 Ga0395901_0095363
259 Ga0466972_0012196
260 Ga0466972_0012403
261 Ga0466965_0010599
262 Ga0466966_0094518
263 Ga0466961_0024154
264 Ga0466968_0070067
265 Ga0466970_0006048
266 Ga0466970_0135489
267 Ga0466959_0069211
268 Ga0466958_0029948
269 Ga0466958_0072593
270 Ga0466967_0364494
271 Ga0495590_0000095
272 Ga0496102_0118667
273 Ga0496105_0004029
274 Ga0496114_0275595
275 Ga0496117_0003412
276 Ga0496117_0009514
277 Ga0496118_0005277
278 Ga0496119_0000552
279 Ga0496120_0094880
280 Ga0496121_0000025
281 Ga0501033_0000716
282 Ga0501033_0012699
283 Ga0501033_0023157
284 Ga0501033_0142808
285 Ga0501034_0012879
286 Ga0501034_0029771
287 Ga0501034_0034355
288 Ga0501034_0109324
289 Ga0501034_0113252
290 Ga0501034_0123455
291 Ga0501034_0144631
292 Ga0501034_0159738
293 Ga0501034_0160957
294 Ga0501034_0188666
295 Ga0501034_0353188
296 Ga0501034_0434814
297 Ga0501034_0531696
298 Ga0501036_0073701
299 Ga0501037_0031327
300 Ga0501037_0165899
301 Ga0501037_0187709
302 Ga0501038_0011075
303 Ga0501038_0017355
304 Ga0501038_0060475
305 Ga0501038_0427903
306 Ga0501039_0038547
307 Ga0501042_0179525
308 Ga0501043_0008566
309 Ga0501043_0024664
310 Ga0501043_0153642
311 Ga0501043_0503603
312 Ga0501046_0020615
313 Ga0501046_0075478
314 Ga0501046_0187880
315 Ga0501046_0315620
316 Ga0501047_0000910
317 Ga0501047_0111499
318 Ga0501047_0226843
319 Ga0501047_0230984
320 Ga0501047_0339704
321 Ga0501047_0597308
322 Ga0501067_0134660
323 Ga0501070_0000050
324 Ga0501070_0002060
325 Ga0501070_0373013
326 Ga0501072_0015545
327 Ga0501073_0020403
328 Ga0501073_0078163
329 Ga0501080_0003641
330 Ga0501080_0161618
331 Ga0501083_0018738
332 Ga0501035_0103424
333 Ga0501035_0317098
334 Ga0501035_0362993
335 Ga0501035_0466848
336 Ga0501044_0048099
337 Ga0501044_0438987
338 Ga0501045_0222724
339 nmdc:mga0yw44_196741_c1
340 nmdc:mga06z11_220058_c1
341 nmdc:mga06z11_324671_c1
342 Ga0500635_0001345
343 Ga0500559_0053599
344 Ga0500568_0000161
345 Ga0500568_0002744
346 Ga0500568_0003488
347 Ga0500588_0046165
348 Ga0500590_004732
349 Ga0500620_000282
350 2644095027
351 2644197084
352 2844841507
353 2857736000
354 2857737534
355 2862994712
356 2884764410
357 2904503884
358 2908676850
359 2919057155
360 2919527210
361 2928154929
362 2928501992
363 8048747353

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04321

RmlD_sub_bind

RmlD substrate binding domain

14

292

0.97

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

16

220

0.88

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

18

245

0.86

PF07993

NAD_binding_4

Male sterility protein

42

200

0.82

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

26

245

0.81

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

21

159

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
3sc6-assembly6.cif.gz_F 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.968 2 277
1vl0-assembly1.cif.gz_B crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution 0.9625 1 277
3sc6-assembly2.cif.gz_B 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9576 2 277
3sc6-assembly5.cif.gz_E 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9567 2 277
1vl0-assembly1.cif.gz_B crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution 0.949 1 277
ID Description Score Start End Superfamily
3sc6D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9565 2 208 3.40.50.720
1vl0B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9504 2 207 3.40.50.720
1kc0A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9134 1 282 3.40.50.720
1kc0A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9103 1 282 3.40.50.720
4wpgA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8913 2 220 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2U1TEY4-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9969 1 278 GO:0005829
GO:0008831
GO:0019305
GO:0045226
AF-A0A4R8ZQ99-F1-model_v4 deleted 0.9964 1 170
AF-A0A3E0W0X0-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9931 2 280 GO:0005829
GO:0008831
GO:0019305
GO:0045226
AF-A0A399NZ31-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9907 10 258 GO:0005829
GO:0008831
GO:0019305
GO:0045226
AF-A0A6J7SLT1-F1-model_v4 Unannotated protein 0.9901 93 281 GO:0005829
GO:0008831
GO:0019305
GO:0045226

Map