F276859
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 181 | 129 | 170 | 432 |
Family's Representative Sequence
| Representative Sequence | 3300005367|Ga0070667_100036981|Ga0070667_1000369813 |
| Length | 480 |
| Sequence | MELTGNIVQALHAIKKLLILLFHGKAGPLRHPEVENRQSISHYICRMNLQDRDKAVIWHPFTPFKHSPAPIPIVKGDGVYLIDEQGKHYVDAISSWWVNLHGHAHPYIAEKIYKQANTLEQVIFAGFTHEPAIELAERLLPKLPGGFSKIFYSDNGSTATEVAIKMALQFWWNRDAVSGAKSSSRRKILAFNNSYHGDTFGAMSVSDRSIFTLAFHDKLFEVLFIDTPTDENLPGLQQLIEKESASIAAFIYEPLLQGAGGMKMYDAELLDALLVTLKKNEIICIADEVMTGFGRTGKLFASAYCTMQPDIICLSKGLTGGTMALGVTAVVSSIVDAFVSDDKLKTFFHGHSFTANPLACTAALASLDLLEKESCETSIKSIVQLNTSFTEGLRKSNYTLVKSIRQLGTIIAFEVEQGEDGYLNTIAAVVTQKALQRGVYLRPLGNTVYIMPPYCITPVQLKQVYTVIEEIILEIQTPSP |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2585428183 | Chryseobacterium sp. YR485 | Isolate | Rhizosphere |
| 2 | 2585428185 | Chryseobacterium sp. YR459 | Isolate | Rhizosphere |
| 3 | 2738541273 | Elizabethkingia sp. YR214 | Isolate | Unclassified |
| 4 | 2738541283 | Pedobacter sp. OK701 | Isolate | Unclassified |
| 5 | 2738543014 | Elizabethkingia sp. YR191 | Isolate | Unclassified |
| 6 | 2833640130 | Mariniflexile sp. TRM1-10 | Isolate | Rhizosphere |
| 7 | 2883068021 | Chitinophaga rhizosphaerae T16R-86 | Isolate | Rhizosphere |
| 8 | 2896085136 | Chitinophaga alhagiae T22 | Isolate | Unclassified |
| 9 | 2896109856 | Chitinophaga sp. SYP-B3965 | Isolate | Rhizosphere |
| 10 | 2910245624 | Adhaeribacter radiodurans KUDC8001 | Isolate | Rhizosphere |
| 11 | 2919692658 | Algoriphagus sp. 4150 | Isolate | Rhizosphere |
| 12 | 3300001989 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 | Metagenome | Rhizosphere |
| 13 | 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Metagenome | Rhizosphere |
| 14 | 3300002067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 | Metagenome | Rhizosphere |
| 15 | 3300003203 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 16 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 17 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 18 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 19 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 22 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 24 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 27 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 28 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 29 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 30 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 31 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 32 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 33 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 34 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 35 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 36 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 37 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 38 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 39 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 40 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 42 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 43 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 45 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 46 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 47 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 49 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 50 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 51 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 52 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 53 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 54 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 55 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 56 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 57 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 58 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 59 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 60 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 61 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 62 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 63 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 64 | 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Metagenome | Rhizosphere |
| 65 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 66 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 67 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 68 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 69 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 70 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 71 | 3300025900 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 91 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 93 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 94 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 95 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 96 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 97 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 98 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 99 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 100 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 101 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 102 | 3300041997 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 | Metagenome | Rhizosphere |
| 103 | 3300042012 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 | Metagenome | Rhizosphere |
| 104 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 105 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 106 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300046519 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 111 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 112 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 113 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 114 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 115 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 116 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 117 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 118 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 119 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 120 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 121 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 122 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 123 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 124 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 125 | 3300053108 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere | Metagenome | Endosphere |
| 126 | 3300053130 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere | Metagenome | Endosphere |
| 127 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 128 | 3300053727 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere | Metagenome | Endosphere |
| 129 | 3300055283 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere | Metagenome | Endosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 93.92 |
| Metatranscriptomes | 0 |
| Isolates | 6.08 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 4.97 |
| Nodule | 0 |
| Rhizoplane | 0.55 |
| Rhizosphere | 85.64 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 8.84 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI24739J22299_10005018 | 3300001989 | Bacteria | 5039 |
| 2 | JGI24739J22299_10020685 | 3300001989 | Bacteria | 2350 |
| 3 | JGI24739J22299_10027672 | 3300001989 | Bacteria | 1980 |
| 4 | JGI24737J22298_10000246 | 3300001990 | Bacteria | 17962 |
| 5 | JGI24737J22298_10011287 | 3300001990 | Bacteria | 2930 |
| 6 | JGI24735J21928_10000004 | 3300002067 | Bacteria | 381713 |
| 7 | JGI24735J21928_10012978 | 3300002067 | Bacteria | 2627 |
| 8 | JGI25406J46586_10005063 | 3300003203 | Bacteria | 6119 |
| 9 | rootL2_10174645 | 3300003322 | Bacteria | 1742 |
| 10 | rootH1_10151105 | 3300003323 | Bacteria | 2164 |
| 11 | rootH1_10216355 | 3300003323 | Bacteria | 1811 |
| 12 | rootH1_10230236 | 3300003323 | Bacteria | 4048 |
| 13 | rootH1_10261937 | 3300003323 | Bacteria | 3701 |
| 14 | JGI25160J50197_1000989 | 3300003354 | Bacteria | 14765 |
| 15 | Ga0070658_10128835 | 3300005327 | Bacteria | 2108 |
| 16 | Ga0070658_10182001 | 3300005327 | Bacteria | 1768 |
| 17 | Ga0070670_100010878 | 3300005331 | Bacteria | 7772 |
| 18 | Ga0070670_100019947 | 3300005331 | Bacteria | 5755 |
| 19 | Ga0068869_100082464 | 3300005334 | Bacteria | 2403 |
| 20 | Ga0070666_10001269 | 3300005335 | Bacteria | 15275 |
| 21 | Ga0068868_100006881 | 3300005338 | Bacteria | 8077 |
| 22 | Ga0070660_100031680 | 3300005339 | Bacteria | 3973 |
| 23 | Ga0070671_100017327 | 3300005355 | Bacteria | 5834 |
| 24 | Ga0070674_100176976 | 3300005356 | Bacteria | 1631 |
| 25 | Ga0070659_100017092 | 3300005366 | Bacteria | 5453 |
| 26 | Ga0070667_100001521 | 3300005367 | Bacteria | 20766 |
| 27 | Ga0070667_100036981 | 3300005367 | Bacteria | 4093 |
| 28 | Ga0070679_100145335 | 3300005530 | Bacteria | 2349 |
| 29 | Ga0070665_100000003 | 3300005548 | Bacteria | 811857 |
| 30 | Ga0068855_100012779 | 3300005563 | Bacteria | 10128 |
| 31 | Ga0068852_100239779 | 3300005616 | Bacteria | 1732 |
| 32 | Ga0068859_100000106 | 3300005617 | Bacteria | 78128 |
| 33 | Ga0068859_100089373 | 3300005617 | Bacteria | 3130 |
| 34 | Ga0068864_100024225 | 3300005618 | Bacteria | 5104 |
| 35 | Ga0068864_100049297 | 3300005618 | Bacteria | 3623 |
| 36 | Ga0068864_100268449 | 3300005618 | Bacteria | 1589 |
| 37 | Ga0068863_100000567 | 3300005841 | Bacteria | 37587 |
| 38 | Ga0068858_100007710 | 3300005842 | Bacteria | 10391 |
| 39 | Ga0068860_100002172 | 3300005843 | Bacteria | 20644 |
| 40 | Ga0068860_100171284 | 3300005843 | Bacteria | 2097 |
| 41 | Ga0081539_10001598 | 3300005985 | Bacteria | 37363 |
| 42 | Ga0075366_10010897 | 3300006195 | Bacteria | 5116 |
| 43 | Ga0097621_100000143 | 3300006237 | Bacteria | 43193 |
| 44 | Ga0097621_100083019 | 3300006237 | Bacteria | 2669 |
| 45 | Ga0068871_100003804 | 3300006358 | Bacteria | 10403 |
| 46 | Ga0068871_100127038 | 3300006358 | Bacteria | 2159 |
| 47 | Ga0068871_100197454 | 3300006358 | Bacteria | 1736 |
| 48 | Ga0075431_100012347 | 3300006847 | Bacteria | 8619 |
| 49 | Ga0097620_100000106 | 3300006931 | Bacteria | 78128 |
| 50 | Ga0097620_100089388 | 3300006931 | Bacteria | 3130 |
| 51 | Ga0105244_10000058 | 3300009036 | Bacteria | 128877 |
| 52 | Ga0105240_10000161 | 3300009093 | Bacteria | 137359 |
| 53 | Ga0105247_10002053 | 3300009101 | Bacteria | 13950 |
| 54 | Ga0105247_10007696 | 3300009101 | Bacteria | 6592 |
| 55 | Ga0114129_10101824 | 3300009147 | Bacteria | 3973 |
| 56 | Ga0105243_10000090 | 3300009148 | Bacteria | 102483 |
| 57 | Ga0105243_10185222 | 3300009148 | Bacteria | 1814 |
| 58 | Ga0105241_10007744 | 3300009174 | Bacteria | 7896 |
| 59 | Ga0105248_10042637 | 3300009177 | Bacteria | 5089 |
| 60 | Ga0105237_10003683 | 3300009545 | Bacteria | 18058 |
| 61 | Ga0105237_10005844 | 3300009545 | Bacteria | 13806 |
| 62 | Ga0105249_10002874 | 3300009553 | Bacteria | 14864 |
| 63 | Ga0105249_10032423 | 3300009553 | Bacteria | 4727 |
| 64 | Ga0105249_10046119 | 3300009553 | Bacteria | 3967 |
| 65 | Ga0105246_10008765 | 3300011119 | Bacteria | 6222 |
| 66 | Ga0157373_10000661 | 3300013100 | Bacteria | 27028 |
| 67 | Ga0157371_10000622 | 3300013102 | Bacteria | 42231 |
| 68 | Ga0157371_10067258 | 3300013102 | Bacteria | 2536 |
| 69 | Ga0157371_10128104 | 3300013102 | Bacteria | 1805 |
| 70 | Ga0157370_10003635 | 3300013104 | Bacteria | 18022 |
| 71 | Ga0157370_10046721 | 3300013104 | Bacteria | 4151 |
| 72 | Ga0157369_10067403 | 3300013105 | Bacteria | 3848 |
| 73 | Ga0157374_10066118 | 3300013296 | Bacteria | 3398 |
| 74 | Ga0157374_10112467 | 3300013296 | Bacteria | 2620 |
| 75 | Ga0157378_10021291 | 3300013297 | Bacteria | 5700 |
| 76 | Ga0157378_10107206 | 3300013297 | Bacteria | 2556 |
| 77 | Ga0163162_10003346 | 3300013306 | Bacteria | 15334 |
| 78 | Ga0163162_10144849 | 3300013306 | Bacteria | 2491 |
| 79 | Ga0157372_10001064 | 3300013307 | Bacteria | 30014 |
| 80 | Ga0157372_10001219 | 3300013307 | Bacteria | 27839 |
| 81 | Ga0157372_10218156 | 3300013307 | Bacteria | 2211 |
| 82 | Ga0157375_10000313 | 3300013308 | Bacteria | 43467 |
| 83 | Ga0163163_10001267 | 3300014325 | Bacteria | 21322 |
| 84 | Ga0163163_10031021 | 3300014325 | Bacteria | 5155 |
| 85 | Ga0182008_10000771 | 3300014497 | Bacteria | 22454 |
| 86 | Ga0157379_10011363 | 3300014968 | Bacteria | 7764 |
| 87 | Ga0157376_10000191 | 3300014969 | Bacteria | 42509 |
| 88 | Ga0157376_10009335 | 3300014969 | Bacteria | 7126 |
| 89 | Ga0157376_10015818 | 3300014969 | Bacteria | 5710 |
| 90 | Ga0182006_1002737 | 3300015261 | Bacteria | 9445 |
| 91 | Ga0163161_10001232 | 3300017792 | Bacteria | 19196 |
| 92 | Ga0163161_10003812 | 3300017792 | Bacteria | 10569 |
| 93 | Ga0213876_10003750 | 3300021384 | Bacteria | 8618 |
| 94 | Ga0207426_1000009 | 3300025302 | Bacteria | 797229 |
| 95 | Ga0207710_10002135 | 3300025900 | Bacteria | 9338 |
| 96 | Ga0207680_10000125 | 3300025903 | Bacteria | 35925 |
| 97 | Ga0207705_10201398 | 3300025909 | Unclassified | 1508 |
| 98 | Ga0207654_10003760 | 3300025911 | Bacteria | 7650 |
| 99 | Ga0207695_10001397 | 3300025913 | Bacteria | 40785 |
| 100 | Ga0207671_10001029 | 3300025914 | Bacteria | 33967 |
| 101 | Ga0207657_10004159 | 3300025919 | Bacteria | 15337 |
| 102 | Ga0207644_10007054 | 3300025931 | Bacteria | 7320 |
| 103 | Ga0207644_10041306 | 3300025931 | Unclassified | 3262 |
| 104 | Ga0207690_10007061 | 3300025932 | Bacteria | 6667 |
| 105 | Ga0207669_10104750 | 3300025937 | Bacteria | 1880 |
| 106 | Ga0207689_10000853 | 3300025942 | Bacteria | 29374 |
| 107 | Ga0207689_10089424 | 3300025942 | Bacteria | 2530 |
| 108 | Ga0207667_10009151 | 3300025949 | Bacteria | 11698 |
| 109 | Ga0207651_10090138 | 3300025960 | Bacteria | 2241 |
| 110 | Ga0207712_10002069 | 3300025961 | Bacteria | 13179 |
| 111 | Ga0207658_10025657 | 3300025986 | Bacteria | 4127 |
| 112 | Ga0207703_10003904 | 3300026035 | Bacteria | 12380 |
| 113 | Ga0207641_10000082 | 3300026088 | Bacteria | 138385 |
| 114 | Ga0207641_10111667 | 3300026088 | Bacteria | 2424 |
| 115 | Ga0207676_10013487 | 3300026095 | Bacteria | 5871 |
| 116 | Ga0207698_10019100 | 3300026142 | Bacteria | 4683 |
| 117 | Ga0268266_10000078 | 3300028379 | Bacteria | 213632 |
| 118 | Ga0268264_10008830 | 3300028381 | Bacteria | 8354 |
| 119 | Ga0268264_10015722 | 3300028381 | Bacteria | 6198 |
| 120 | Ga0307515_10000190 | 3300028794 | Bacteria | 150300 |
| 121 | Ga0265327_10000296 | 3300031251 | Bacteria | 96658 |
| 122 | Ga0307509_10152358 | 3300031507 | Unclassified | 2225 |
| 123 | Ga0307414_10052929 | 3300032004 | Bacteria | 2828 |
| 124 | Ga0307414_10140560 | 3300032004 | Unclassified | 1890 |
| 125 | Ga0307414_10225342 | 3300032004 | Bacteria | 1542 |
| 126 | Ga0395899_0000254 | 3300037312 | Bacteria | 70643 |
| 127 | Ga0395899_0191060 | 3300037312 | Bacteria | 1433 |
| 128 | Ga0395900_0005677 | 3300037418 | Bacteria | 13047 |
| 129 | Ga0395900_0102615 | 3300037418 | Bacteria | 2938 |
| 130 | Ga0395900_0149074 | 3300037418 | Bacteria | 2391 |
| 131 | Ga0395898_0011345 | 3300037466 | Bacteria | 9259 |
| 132 | Ga0395898_0014321 | 3300037466 | Bacteria | 8149 |
| 133 | Ga0395905_0000231 | 3300037471 | Bacteria | 84714 |
| 134 | Ga0395905_0038333 | 3300037471 | Bacteria | 4497 |
| 135 | Ga0395901_0000388 | 3300038443 | Bacteria | 52630 |
| 136 | Ga0395901_0002033 | 3300038443 | Bacteria | 20805 |
| 137 | Ga0395901_0104800 | 3300038443 | Bacteria | 2968 |
| 138 | Ga0395901_0294366 | 3300038443 | Bacteria | 1684 |
| 139 | Ga0436365_0768063 | 3300039437 | Bacteria | 11370 |
| 140 | Ga0439431_0001092 | 3300041997 | Bacteria | 5875 |
| 141 | Ga0439455_0003083 | 3300042012 | Bacteria | 3134 |
| 142 | Ga0466972_0000024 | 3300044658 | Bacteria | 187985 |
| 143 | Ga0466970_0000469 | 3300044765 | Bacteria | 19993 |
| 144 | Ga0495627_015514 | 3300046453 | Bacteria | 2629 |
| 145 | Ga0495580_0198701 | 3300046472 | Bacteria | 1382 |
| 146 | Ga0495632_0071027 | 3300046519 | Bacteria | 1673 |
| 147 | Ga0495668_0001220 | 3300046616 | Bacteria | 25984 |
| 148 | Ga0495672_0026693 | 3300047320 | Unclassified | 3681 |
| 149 | Ga0495686_0000416 | 3300047472 | Bacteria | 67601 |
| 150 | Ga0496112_0135946 | 3300048915 | Bacteria | 2429 |
| 151 | Ga0496116_0025305 | 3300048919 | Bacteria | 4366 |
| 152 | Ga0496122_0001778 | 3300048925 | Bacteria | 33029 |
| 153 | Ga0496123_0020777 | 3300048926 | Bacteria | 5124 |
| 154 | Ga0501033_0135863 | 3300049570 | Bacteria | 1779 |
| 155 | Ga0501034_0019947 | 3300049571 | Bacteria | 6845 |
| 156 | Ga0501034_0036257 | 3300049571 | Unclassified | 4996 |
| 157 | Ga0501034_0051106 | 3300049571 | Bacteria | 4168 |
| 158 | Ga0501038_0152887 | 3300049574 | Bacteria | 1880 |
| 159 | Ga0501040_0054639 | 3300049576 | Bacteria | 2738 |
| 160 | Ga0501047_0280446 | 3300049581 | Bacteria | 1511 |
| 161 | Ga0501073_0127370 | 3300049589 | Bacteria | 1765 |
| 162 | Ga0501080_0205806 | 3300049742 | Unclassified | 1805 |
| 163 | Ga0501044_0027264 | 3300049823 | Bacteria | 6040 |
| 164 | Ga0501044_0252505 | 3300049823 | Bacteria | 1704 |
| 165 | nmdc:mga0k408_2783_c1 | 3300050493 | Bacteria | 9293 |
| 166 | Ga0500562_000007 | 3300053108 | Bacteria | 241755 |
| 167 | Ga0500642_0066560 | 3300053130 | Unclassified | 1630 |
| 168 | Ga0500622_0002683 | 3300053156 | Bacteria | 12605 |
| 169 | Ga0500611_000006 | 3300053727 | Bacteria | 226069 |
| 170 | Ga0500661_005963 | 3300055283 | Bacteria | 2272 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300037418 | Ga0395900_0005677 | Ga0395900_0005677_84_1181 | 345 |
| 2 | 3300037418 | Ga0395900_0149074 | Ga0395900_0149074_1148_2269 | 359 |
| 3 | 3300009148 | Ga0105243_10185222 | Ga0105243_101852222 | 362 |
| 4 | 3300005331 | Ga0070670_100010878 | Ga0070670_1000108785 | 382 |
| 5 | 3300005334 | Ga0068869_100082464 | Ga0068869_1000824643 | 384 |
| 6 | 3300025942 | Ga0207689_10089424 | Ga0207689_100894242 | 384 |
| 7 | 3300037418 | Ga0395900_0102615 | Ga0395900_0102615_1062_2399 | 388 |
| 8 | 3300037471 | Ga0395905_0038333 | Ga0395905_0038333_675_2012 | 388 |
| 9 | 3300038443 | Ga0395901_0002033 | Ga0395901_0002033_1774_3111 | 388 |
| 10 | 3300049823 | Ga0501044_0252505 | Ga0501044_0252505_175_1386 | 388 |
| 11 | 3300009147 | Ga0114129_10101824 | Ga0114129_101018244 | 393 |
| 12 | 3300053130 | Ga0500642_0066560 | Ga0500642_0066560_356_1579 | 394 |
| 13 | 3300049581 | Ga0501047_0280446 | Ga0501047_0280446_261_1490 | 396 |
| 14 | 3300053727 | Ga0500611_000006 | Ga0500611_000006_189425_190726 | 399 |
| 15 | 3300025960 | Ga0207651_10090138 | Ga0207651_100901382 | 401 |
| 16 | 3300037312 | Ga0395899_0191060 | Ga0395899_0191060_32_1297 | 401 |
| 17 | 3300037466 | Ga0395898_0011345 | Ga0395898_0011345_5296_6537 | 401 |
| 18 | 3300037466 | Ga0395898_0014321 | Ga0395898_0014321_4114_5379 | 401 |
| 19 | 3300037471 | Ga0395905_0000231 | Ga0395905_0000231_32113_33378 | 401 |
| 20 | 3300038443 | Ga0395901_0000388 | Ga0395901_0000388_8746_10011 | 401 |
| 21 | 3300038443 | Ga0395901_0294366 | Ga0395901_0294366_57_1298 | 401 |
| 22 | 3300042012 | Ga0439455_0003083 | Ga0439455_0003083_936_2177 | 401 |
| 23 | 3300005331 | Ga0070670_100019947 | Ga0070670_1000199473 | 403 |
| 24 | 3300006847 | Ga0075431_100012347 | Ga0075431_1000123475 | 403 |
| 25 | 3300014325 | Ga0163163_10001267 | Ga0163163_100012677 | 403 |
| 26 | 3300003323 | rootH1_10151105 | rootH1_101511052 | 404 |
| 27 | 3300038443 | Ga0395901_0104800 | Ga0395901_0104800_385_1641 | 404 |
| 28 | iso_pu_bacteria | 2833640130 | 2833641446 | 405 |
| 29 | 3300005618 | Ga0068864_100049297 | Ga0068864_1000492972 | 406 |
| 30 | 3300046472 | Ga0495580_0198701 | Ga0495580_0198701_37_1335 | 406 |
| 31 | 3300048915 | Ga0496112_0135946 | Ga0496112_0135946_999_2276 | 406 |
| 32 | 3300005530 | Ga0070679_100145335 | Ga0070679_1001453352 | 407 |
| 33 | 3300013296 | Ga0157374_10112467 | Ga0157374_101124673 | 407 |
| 34 | 3300021384 | Ga0213876_10003750 | Ga0213876_100037504 | 407 |
| 35 | 3300039437 | Ga0436365_0768063 | Ga0436365_0768063_2186_3463 | 407 |
| 36 | iso_pu_bacteria | 2910245624 | 2910246589 | 407 |
| 37 | 3300009553 | Ga0105249_10046119 | Ga0105249_100461192 | 408 |
| 38 | iso_pu_bacteria | 2738541273 | 2738701055 | 408 |
| 39 | iso_pu_bacteria | 2738541283 | 2738759695 | 408 |
| 40 | iso_pu_bacteria | 2738543014 | 2739255130 | 408 |
| 41 | iso_pu_bacteria | 2919692658 | 2919695223 | 408 |
| 42 | 3300005355 | Ga0070671_100017327 | Ga0070671_1000173275 | 409 |
| 43 | 3300005356 | Ga0070674_100176976 | Ga0070674_1001769761 | 409 |
| 44 | 3300009093 | Ga0105240_10000161 | Ga0105240_10000161110 | 409 |
| 45 | 3300013307 | Ga0157372_10218156 | Ga0157372_102181563 | 409 |
| 46 | 3300025913 | Ga0207695_10001397 | Ga0207695_1000139727 | 409 |
| 47 | 3300025931 | Ga0207644_10007054 | Ga0207644_100070546 | 409 |
| 48 | 3300025937 | Ga0207669_10104750 | Ga0207669_101047501 | 409 |
| 49 | 3300049574 | Ga0501038_0152887 | Ga0501038_0152887_309_1592 | 409 |
| 50 | 3300049589 | Ga0501073_0127370 | Ga0501073_0127370_382_1665 | 409 |
| 51 | iso_pu_bacteria | 2883068021 | 2883072165 | 409 |
| 52 | iso_pu_bacteria | 2896085136 | 2896088706 | 409 |
| 53 | iso_pu_bacteria | 2896109856 | 2896110098 | 409 |
| 54 | 3300001989 | JGI24739J22299_10020685 | JGI24739J22299_100206852 | 410 |
| 55 | 3300001990 | JGI24737J22298_10000246 | JGI24737J22298_1000024611 | 410 |
| 56 | 3300002067 | JGI24735J21928_10000004 | JGI24735J21928_10000004207 | 410 |
| 57 | 3300003203 | JGI25406J46586_10005063 | JGI25406J46586_100050633 | 410 |
| 58 | 3300003322 | rootL2_10174645 | rootL2_101746451 | 410 |
| 59 | 3300003323 | rootH1_10216355 | rootH1_102163552 | 410 |
| 60 | 3300003354 | JGI25160J50197_1000989 | JGI25160J50197_10009896 | 410 |
| 61 | 3300005327 | Ga0070658_10128835 | Ga0070658_101288352 | 410 |
| 62 | 3300005335 | Ga0070666_10001269 | Ga0070666_1000126910 | 410 |
| 63 | 3300005338 | Ga0068868_100006881 | Ga0068868_1000068818 | 410 |
| 64 | 3300005367 | Ga0070667_100001521 | Ga0070667_10000152120 | 410 |
| 65 | 3300005367 | Ga0070667_100036981 | Ga0070667_1000369813 | 410 |
| 66 | 3300005616 | Ga0068852_100239779 | Ga0068852_1002397791 | 410 |
| 67 | 3300005617 | Ga0068859_100000106 | Ga0068859_10000010629 | 410 |
| 68 | 3300005617 | Ga0068859_100089373 | Ga0068859_1000893734 | 410 |
| 69 | 3300005618 | Ga0068864_100024225 | Ga0068864_1000242254 | 410 |
| 70 | 3300005618 | Ga0068864_100268449 | Ga0068864_1002684491 | 410 |
| 71 | 3300005841 | Ga0068863_100000567 | Ga0068863_10000056724 | 410 |
| 72 | 3300005842 | Ga0068858_100007710 | Ga0068858_1000077107 | 410 |
| 73 | 3300005843 | Ga0068860_100002172 | Ga0068860_1000021725 | 410 |
| 74 | 3300005843 | Ga0068860_100171284 | Ga0068860_1001712842 | 410 |
| 75 | 3300005985 | Ga0081539_10001598 | Ga0081539_1000159821 | 410 |
| 76 | 3300006237 | Ga0097621_100000143 | Ga0097621_10000014326 | 410 |
| 77 | 3300006237 | Ga0097621_100083019 | Ga0097621_1000830192 | 410 |
| 78 | 3300006358 | Ga0068871_100003804 | Ga0068871_1000038046 | 410 |
| 79 | 3300006358 | Ga0068871_100127038 | Ga0068871_1001270381 | 410 |
| 80 | 3300006358 | Ga0068871_100197454 | Ga0068871_1001974541 | 410 |
| 81 | 3300006931 | Ga0097620_100000106 | Ga0097620_10000010629 | 410 |
| 82 | 3300006931 | Ga0097620_100089388 | Ga0097620_1000893884 | 410 |
| 83 | 3300009101 | Ga0105247_10002053 | Ga0105247_100020534 | 410 |
| 84 | 3300009101 | Ga0105247_10007696 | Ga0105247_100076963 | 410 |
| 85 | 3300009174 | Ga0105241_10007744 | Ga0105241_100077447 | 410 |
| 86 | 3300009177 | Ga0105248_10042637 | Ga0105248_100426372 | 410 |
| 87 | 3300009545 | Ga0105237_10003683 | Ga0105237_100036837 | 410 |
| 88 | 3300009545 | Ga0105237_10005844 | Ga0105237_100058444 | 410 |
| 89 | 3300009553 | Ga0105249_10002874 | Ga0105249_100028746 | 410 |
| 90 | 3300009553 | Ga0105249_10032423 | Ga0105249_100324233 | 410 |
| 91 | 3300011119 | Ga0105246_10008765 | Ga0105246_100087652 | 410 |
| 92 | 3300013102 | Ga0157371_10128104 | Ga0157371_101281041 | 410 |
| 93 | 3300013105 | Ga0157369_10067403 | Ga0157369_100674034 | 410 |
| 94 | 3300013296 | Ga0157374_10066118 | Ga0157374_100661182 | 410 |
| 95 | 3300013297 | Ga0157378_10021291 | Ga0157378_100212913 | 410 |
| 96 | 3300013297 | Ga0157378_10107206 | Ga0157378_101072063 | 410 |
| 97 | 3300013306 | Ga0163162_10003346 | Ga0163162_100033468 | 410 |
| 98 | 3300013306 | Ga0163162_10144849 | Ga0163162_101448491 | 410 |
| 99 | 3300013307 | Ga0157372_10001064 | Ga0157372_1000106419 | 410 |
| 100 | 3300014325 | Ga0163163_10031021 | Ga0163163_100310214 | 410 |
| 101 | 3300014968 | Ga0157379_10011363 | Ga0157379_100113634 | 410 |
| 102 | 3300014969 | Ga0157376_10000191 | Ga0157376_100001914 | 410 |
| 103 | 3300014969 | Ga0157376_10009335 | Ga0157376_100093353 | 410 |
| 104 | 3300014969 | Ga0157376_10015818 | Ga0157376_100158185 | 410 |
| 105 | 3300017792 | Ga0163161_10001232 | Ga0163161_1000123211 | 410 |
| 106 | 3300025302 | Ga0207426_1000009 | Ga0207426_1000009327 | 410 |
| 107 | 3300025900 | Ga0207710_10002135 | Ga0207710_100021356 | 410 |
| 108 | 3300025903 | Ga0207680_10000125 | Ga0207680_100001259 | 410 |
| 109 | 3300025909 | Ga0207705_10201398 | Ga0207705_102013981 | 410 |
| 110 | 3300025911 | Ga0207654_10003760 | Ga0207654_100037603 | 410 |
| 111 | 3300025914 | Ga0207671_10001029 | Ga0207671_1000102916 | 410 |
| 112 | 3300025919 | Ga0207657_10004159 | Ga0207657_1000415912 | 410 |
| 113 | 3300025931 | Ga0207644_10041306 | Ga0207644_100413061 | 410 |
| 114 | 3300025942 | Ga0207689_10000853 | Ga0207689_100008537 | 410 |
| 115 | 3300025961 | Ga0207712_10002069 | Ga0207712_100020693 | 410 |
| 116 | 3300025986 | Ga0207658_10025657 | Ga0207658_100256573 | 410 |
| 117 | 3300026035 | Ga0207703_10003904 | Ga0207703_100039042 | 410 |
| 118 | 3300026088 | Ga0207641_10000082 | Ga0207641_1000008281 | 410 |
| 119 | 3300026088 | Ga0207641_10111667 | Ga0207641_101116672 | 410 |
| 120 | 3300026095 | Ga0207676_10013487 | Ga0207676_100134874 | 410 |
| 121 | 3300026142 | Ga0207698_10019100 | Ga0207698_100191002 | 410 |
| 122 | 3300028381 | Ga0268264_10008830 | Ga0268264_100088304 | 410 |
| 123 | 3300028381 | Ga0268264_10015722 | Ga0268264_100157227 | 410 |
| 124 | 3300028794 | Ga0307515_10000190 | Ga0307515_100001909 | 410 |
| 125 | 3300031251 | Ga0265327_10000296 | Ga0265327_1000029624 | 410 |
| 126 | 3300031507 | Ga0307509_10152358 | Ga0307509_101523581 | 410 |
| 127 | 3300037312 | Ga0395899_0000254 | Ga0395899_0000254_23033_24319 | 410 |
| 128 | 3300044658 | Ga0466972_0000024 | Ga0466972_0000024_159684_160958 | 410 |
| 129 | 3300044765 | Ga0466970_0000469 | Ga0466970_0000469_317_1591 | 410 |
| 130 | 3300046616 | Ga0495668_0001220 | Ga0495668_0001220_20101_21405 | 410 |
| 131 | 3300047320 | Ga0495672_0026693 | Ga0495672_0026693_1457_2797 | 410 |
| 132 | 3300049570 | Ga0501033_0135863 | Ga0501033_0135863_253_1521 | 410 |
| 133 | 3300049571 | Ga0501034_0019947 | Ga0501034_0019947_647_1915 | 410 |
| 134 | 3300049571 | Ga0501034_0036257 | Ga0501034_0036257_2692_3960 | 410 |
| 135 | 3300049576 | Ga0501040_0054639 | Ga0501040_0054639_846_2180 | 410 |
| 136 | 3300049742 | Ga0501080_0205806 | Ga0501080_0205806_236_1504 | 410 |
| 137 | 3300049823 | Ga0501044_0027264 | Ga0501044_0027264_1587_2855 | 410 |
| 138 | 3300053108 | Ga0500562_000007 | Ga0500562_000007_127109_128380 | 410 |
| 139 | 3300053156 | Ga0500622_0002683 | Ga0500622_0002683_5055_6320 | 410 |
| 140 | 3300055283 | Ga0500661_005963 | Ga0500661_005963_711_1982 | 410 |
| 141 | 3300001989 | JGI24739J22299_10005018 | JGI24739J22299_100050185 | 411 |
| 142 | 3300001989 | JGI24739J22299_10027672 | JGI24739J22299_100276722 | 411 |
| 143 | 3300001990 | JGI24737J22298_10011287 | JGI24737J22298_100112873 | 411 |
| 144 | 3300002067 | JGI24735J21928_10012978 | JGI24735J21928_100129783 | 411 |
| 145 | 3300003323 | rootH1_10230236 | rootH1_102302362 | 411 |
| 146 | 3300003323 | rootH1_10261937 | rootH1_102619373 | 411 |
| 147 | 3300005327 | Ga0070658_10182001 | Ga0070658_101820012 | 411 |
| 148 | 3300005339 | Ga0070660_100031680 | Ga0070660_1000316802 | 411 |
| 149 | 3300005366 | Ga0070659_100017092 | Ga0070659_1000170922 | 411 |
| 150 | 3300005548 | Ga0070665_100000003 | Ga0070665_100000003321 | 411 |
| 151 | 3300005563 | Ga0068855_100012779 | Ga0068855_1000127794 | 411 |
| 152 | 3300006195 | Ga0075366_10010897 | Ga0075366_100108975 | 411 |
| 153 | 3300009036 | Ga0105244_10000058 | Ga0105244_1000005833 | 411 |
| 154 | 3300009148 | Ga0105243_10000090 | Ga0105243_1000009019 | 411 |
| 155 | 3300013100 | Ga0157373_10000661 | Ga0157373_1000066113 | 411 |
| 156 | 3300013102 | Ga0157371_10000622 | Ga0157371_1000062240 | 411 |
| 157 | 3300013102 | Ga0157371_10067258 | Ga0157371_100672583 | 411 |
| 158 | 3300013104 | Ga0157370_10003635 | Ga0157370_100036354 | 411 |
| 159 | 3300013104 | Ga0157370_10046721 | Ga0157370_100467213 | 411 |
| 160 | 3300013307 | Ga0157372_10001219 | Ga0157372_100012197 | 411 |
| 161 | 3300013308 | Ga0157375_10000313 | Ga0157375_1000031323 | 411 |
| 162 | 3300014497 | Ga0182008_10000771 | Ga0182008_100007717 | 411 |
| 163 | 3300015261 | Ga0182006_1002737 | Ga0182006_10027373 | 411 |
| 164 | 3300017792 | Ga0163161_10003812 | Ga0163161_100038125 | 411 |
| 165 | 3300025932 | Ga0207690_10007061 | Ga0207690_100070615 | 411 |
| 166 | 3300025949 | Ga0207667_10009151 | Ga0207667_100091515 | 411 |
| 167 | 3300028379 | Ga0268266_10000078 | Ga0268266_10000078111 | 411 |
| 168 | 3300032004 | Ga0307414_10052929 | Ga0307414_100529291 | 411 |
| 169 | 3300032004 | Ga0307414_10140560 | Ga0307414_101405601 | 411 |
| 170 | 3300032004 | Ga0307414_10225342 | Ga0307414_102253421 | 411 |
| 171 | 3300041997 | Ga0439431_0001092 | Ga0439431_0001092_319_1626 | 411 |
| 172 | 3300046453 | Ga0495627_015514 | Ga0495627_015514_1207_2472 | 411 |
| 173 | 3300046519 | Ga0495632_0071027 | Ga0495632_0071027_289_1560 | 411 |
| 174 | 3300047472 | Ga0495686_0000416 | Ga0495686_0000416_7016_8281 | 411 |
| 175 | 3300048919 | Ga0496116_0025305 | Ga0496116_0025305_433_1734 | 411 |
| 176 | 3300048925 | Ga0496122_0001778 | Ga0496122_0001778_31521_32789 | 411 |
| 177 | 3300048926 | Ga0496123_0020777 | Ga0496123_0020777_1379_2647 | 411 |
| 178 | 3300049571 | Ga0501034_0051106 | Ga0501034_0051106_1530_2819 | 411 |
| 179 | 3300050493 | nmdc:mga0k408_2783_c1 | nmdc:mga0k408_2783_c1_6135_7400 | 411 |
| 180 | iso_pu_bacteria | 2585428183 | 2588213311 | 411 |
| 181 | iso_pu_bacteria | 2585428185 | 2588223803 | 411 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6g4e-assembly1.cif.gz_A | crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp and 6-aminohexanoate (6-aca) | 0.9292 | 1 | 410 |
| 6io1-assembly1.cif.gz_B | crystal structure of a novel thermostable (s)-enantioselective omega-transaminase from thermomicrobium roseum | 0.926 | 3 | 410 |
| 3du4-assembly1.cif.gz_B | crystal structure of 7-keto-8-aminopelargonic acid bound 7,8-diaminopelargonic acid synthase in bacillus subtilis | 0.9253 | 3 | 410 |
| 6g4e-assembly1.cif.gz_A | crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp and 6-aminohexanoate (6-aca) | 0.9249 | 1 | 410 |
| 6zhk-assembly1.cif.gz_B | crystal structure of adenosylmethionine-8-amino-7-oxononanoate aminotransferase from methanocaldococcus jannaschii dsm 2661 | 0.9245 | 3 | 410 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1mgvA02 | Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.9022 | 59 | 308 | 3.40.640.10 |
| af_Q2FVJ6_72_340_3.40.640.10 | Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.9002 | 67 | 305 | 3.40.640.10 |
| af_P50277_75_373_3.40.640.10 | Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.8978 | 60 | 307 | 3.40.640.10 |
| 4a0rA03 | Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.8958 | 60 | 311 | 3.40.640.10 |
| af_A0A1D6DZK7_115_400_3.40.640.10 | Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.8923 | 62 | 309 | 3.40.640.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A2E7CRU1-F1-model_v4 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (DAPA AT) (DAPA aminotransferase) (7,8-diaminononanoate synthase) (DANS) (Diaminopelargonic acid synthase) | 0.9643 | 1 | 410 |
GO:0004015
GO:0004141 GO:0005737 GO:0009102 GO:0030170 GO:0051537 |
| AF-A0A530CLJ1-F1-model_v4 | Aminotransferase class III-fold pyridoxal phosphate-dependent enzyme | 0.9601 | 187 | 411 |
GO:0004015
GO:0009102 GO:0030170 |
| AF-A0A2E7CRU1-F1-model_v4 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (DAPA AT) (DAPA aminotransferase) (7,8-diaminononanoate synthase) (DANS) (Diaminopelargonic acid synthase) | 0.9597 | 1 | 410 |
GO:0004015
GO:0004141 GO:0005737 GO:0009102 GO:0030170 GO:0051537 |
| AF-A0A2E2ZP56-F1-model_v4 | deleted | 0.9585 | 10 | 409 |
|
| AF-A0A2J6HF44-F1-model_v4 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (DAPA AT) (DAPA aminotransferase) (7,8-diaminononanoate synthase) (DANS) (Diaminopelargonic acid synthase) | 0.9555 | 3 | 411 |
GO:0004015
GO:0004141 GO:0005737 GO:0009102 GO:0030170 GO:0051537 |
Predicted Structure (AlphaFold2)
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