F276693

General Info

Members Datasets Scaffolds Average Seq Length
181 143 180 142

Family's Representative Sequence

Representative Sequence 3300005327|Ga0070658_10029122|Ga0070658_100291225
Length 148
Sequence VVAIPSGYLLDTNVISELMQPRPARGVAEWIETTPEDLLYLSVITIGEIRKGIDLLGEREPKRTALQSWLDRDVRVRFAGRLLAFDVGTAERWGQVEAFAQRQRRTIPTVDAQLAATALHHGLTFVTRNTEDVRATGVPLFNPWTSRP

Samples

Sample ID Description Type Environment
1 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
31 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
35 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
38 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
39 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
40 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
47 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
48 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
52 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
53 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
56 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
57 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
58 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
60 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
61 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
62 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
63 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
64 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
85 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
86 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
87 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
88 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
89 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
90 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
91 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
92 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
93 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
94 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
95 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
96 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
97 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
99 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
100 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
101 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
102 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
103 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
104 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
105 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
106 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
107 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
108 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
109 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
110 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
111 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
112 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
113 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
114 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
122 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
123 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
124 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
125 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
126 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
127 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
128 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
131 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
132 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
133 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
134 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
135 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
136 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
137 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
138 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
139 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
140 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
141 3300059504 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 23R_SD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
142 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
143 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.24
Metatranscriptomes 2.21
Isolates 0.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.31
Nodule 0
Rhizoplane 0
Rhizosphere 91.71
Stem 0
Stem Tuber 0
Unclassified 4.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10200624 3300003320 Bacteria 1275
2 Ga0065165_1035582 3300005262 Bacteria 1528
3 Ga0065707_10083458 3300005295 Bacteria 9087
4 Ga0070658_10029122 3300005327 Bacteria 4435
5 Ga0070676_11439131 3300005328 Unclassified 529
6 Ga0070683_100312626 3300005329 Bacteria 1495
7 Ga0070683_100637401 3300005329 Unclassified 1020
8 Ga0070690_100739781 3300005330 Unclassified 758
9 Ga0070680_100125702 3300005336 Bacteria 2142
10 Ga0070682_100009072 3300005337 Bacteria 5623
11 Ga0070692_10588312 3300005345 Unclassified 734
12 Ga0070668_101532095 3300005347 Bacteria 610
13 Ga0070711_100067148 3300005439 Bacteria 2515
14 Ga0070711_100447392 3300005439 Bacteria 1057
15 Ga0070705_100092650 3300005440 Bacteria 1887
16 Ga0070694_100865964 3300005444 Bacteria 744
17 Ga0070663_100009405 3300005455 Bacteria 6050
18 Ga0070681_10065706 3300005458 Bacteria 3596
19 Ga0070685_10040089 3300005466 Bacteria 2664
20 Ga0070685_10690306 3300005466 Bacteria 743
21 Ga0070706_100269540 3300005467 Bacteria 1589
22 Ga0070707_100342212 3300005468 Unclassified 1453
23 Ga0070707_100697449 3300005468 Bacteria 978
24 Ga0070679_100223899 3300005530 Bacteria 1841
25 Ga0068853_100454906 3300005539 Unclassified 1204
26 Ga0068853_100468526 3300005539 Bacteria 1186
27 Ga0070695_100409977 3300005545 Bacteria 1029
28 Ga0070695_100788672 3300005545 Bacteria 760
29 Ga0070693_100024745 3300005547 Bacteria 3223
30 Ga0070693_100150645 3300005547 Unclassified 1473
31 Ga0068854_100054130 3300005578 Bacteria 2885
32 Ga0068852_101309778 3300005616 Unclassified 746
33 Ga0068861_100267265 3300005719 Unclassified 1467
34 Ga0068862_100009017 3300005844 Bacteria 8258
35 Ga0075364_10067171 3300006051 Bacteria 2356
36 Ga0070715_10222571 3300006163 Bacteria 971
37 Ga0070716_100016129 3300006173 Bacteria 3851
38 Ga0070716_100075934 3300006173 Bacteria 1990
39 Ga0097621_100108741 3300006237 Bacteria 2341
40 Ga0097621_101002156 3300006237 Bacteria 781
41 Ga0068871_100071550 3300006358 Bacteria 2853
42 Ga0068871_100548850 3300006358 Unclassified 1046
43 Ga0075431_100041634 3300006847 Unclassified 4737
44 Ga0075431_100217232 3300006847 Bacteria 1951
45 Ga0075434_100352987 3300006871 Bacteria 1492
46 Ga0075429_100449406 3300006880 Unclassified 1129
47 Ga0075436_100003737 3300006914 Bacteria 10433
48 Ga0075436_100173894 3300006914 Bacteria 1520
49 Ga0075435_100000923 3300007076 Bacteria 18537
50 Ga0075435_100560642 3300007076 Bacteria 990
51 Ga0105240_10427314 3300009093 Bacteria 1487
52 Ga0105247_10036268 3300009101 Bacteria 3006
53 Ga0114129_10005044 3300009147 Bacteria 18585
54 Ga0105242_10006141 3300009176 Bacteria 9260
55 Ga0105242_11636457 3300009176 Unclassified 678
56 Ga0105248_10228480 3300009177 Bacteria 2094
57 Ga0105237_10461582 3300009545 Bacteria 1276
58 Ga0105249_11357061 3300009553 Bacteria 783
59 Ga0099796_10058480 3300010159 Bacteria 1359
60 Ga0105246_10099808 3300011119 Unclassified 2111
61 Ga0157373_10510748 3300013100 Unclassified 869
62 Ga0157370_10055374 3300013104 Bacteria 3779
63 Ga0157369_10001271 3300013105 Bacteria 31328
64 Ga0157369_10225378 3300013105 Unclassified 1961
65 Ga0157369_10622848 3300013105 Bacteria 1113
66 Ga0157378_10000035 3300013297 Bacteria 117634
67 Ga0157378_10001486 3300013297 Bacteria 21171
68 Ga0157372_10174331 3300013307 Bacteria 2489
69 Ga0157375_10000091 3300013308 Bacteria 90894
70 Ga0163163_10096508 3300014325 Bacteria 2976
71 Ga0157380_10462636 3300014326 Bacteria 1221
72 Ga0157379_10124726 3300014968 Bacteria 2317
73 Ga0197907_10304210 3300020069 Bacteria 773
74 Ga0206352_10459964 3300020078 Bacteria 1336
75 Ga0213873_10006069 3300021358 Bacteria 2358
76 Ga0213872_10000888 3300021361 Bacteria 21570
77 Ga0213872_10300584 3300021361 Unclassified 666
78 Ga0213876_10000101 3300021384 Bacteria 95049
79 Ga0213876_10001063 3300021384 Bacteria 17716
80 Ga0213875_10088045 3300021388 Bacteria 1448
81 Ga0224712_10051714 3300022467 Bacteria 1601
82 Ga0207710_10044576 3300025900 Bacteria 1975
83 Ga0207685_10357737 3300025905 Unclassified 738
84 Ga0207645_10859743 3300025907 Bacteria 616
85 Ga0207705_10023757 3300025909 Bacteria 4374
86 Ga0207684_11067206 3300025910 Unclassified 673
87 Ga0207707_10262260 3300025912 Unclassified 1499
88 Ga0207707_11560894 3300025912 Unclassified 521
89 Ga0207652_10077380 3300025921 Bacteria 2903
90 Ga0207646_10022061 3300025922 Bacteria 5873
91 Ga0207664_10466831 3300025929 Bacteria 1128
92 Ga0207686_10007054 3300025934 Bacteria 6045
93 Ga0207665_10041874 3300025939 Bacteria 3060
94 Ga0207661_10277953 3300025944 Unclassified 1496
95 Ga0207661_10527565 3300025944 Unclassified 1080
96 Ga0207661_10578355 3300025944 Unclassified 1030
97 Ga0207667_10704260 3300025949 Unclassified 1012
98 Ga0207639_10214174 3300026041 Bacteria 1660
99 Ga0207678_10025407 3300026067 Bacteria 5170
100 Ga0207675_100036969 3300026118 Bacteria 4555
101 Ga0207698_11247091 3300026142 Unclassified 758
102 Ga0209983_1017919 3300027665 Unclassified 1468
103 Ga0209998_10018552 3300027717 Unclassified 1478
104 Ga0268265_10000452 3300028380 Bacteria 43463
105 Ga0307511_10035855 3300030521 Unclassified 4323
106 Ga0316583_10051662 3300032133 Bacteria 1447
107 Ga0373934_0274081 3300035086 Unclassified 698
108 Ga0373932_0000518 3300035112 Bacteria 11869
109 Ga0373953_0043124 3300035117 Bacteria 1800
110 Ga0373954_0015082 3300035118 Bacteria 3452
111 Ga0373956_0036390 3300035119 Bacteria 2173
112 Ga0373955_0163210 3300035172 Bacteria 1316
113 Ga0373924_0027309 3300035410 Bacteria 2269
114 Ga0373935_0195001 3300035692 Unclassified 1397
115 Ga0373935_0290775 3300035692 Bacteria 1153
116 Ga0373933_0077091 3300035724 Bacteria 2037
117 Ga0373947_0585842 3300035725 Bacteria 760
118 Ga0373937_0066749 3300036401 Bacteria 3314
119 Ga0373937_0145029 3300036401 Bacteria 2222
120 Ga0373925_0382179 3300037068 Bacteria 1147
121 Ga0436364_0929376 3300037853 Bacteria 2283
122 Ga0436365_0242367 3300039437 Bacteria 9734
123 Ga0436365_0833878 3300039437 Bacteria 37717
124 Ga0436365_1132695 3300039437 Bacteria 4754
125 Ga0436360_0755696 3300039438 Unclassified 764
126 Ga0436361_0289914 3300039447 Bacteria 1541
127 Ga0436361_0368268 3300039447 Bacteria 3674
128 Ga0436361_0826884 3300039447 Bacteria 1798
129 Ga0436362_1005639 3300039453 Bacteria 7099
130 Ga0439459_0040747 3300042438 Unclassified 986
131 Ga0466957_0000552 3300044842 Bacteria 18878
132 Ga0495638_0046391 3300046460 Bacteria 2729
133 Ga0495580_0006130 3300046472 Bacteria 9835
134 Ga0495580_0027072 3300046472 Bacteria 4175
135 Ga0495628_0216406 3300046516 Bacteria 1440
136 Ga0495628_0251708 3300046516 Bacteria 1319
137 Ga0495652_0139477 3300046529 Bacteria 1908
138 Ga0495645_0492629 3300046543 Unclassified 767
139 Ga0495625_0116141 3300046660 Bacteria 1826
140 Ga0495599_0222408 3300046678 Unclassified 1154
141 Ga0495623_0467722 3300046679 Unclassified 669
142 Ga0495686_0024194 3300047472 Bacteria 3994
143 Ga0501034_0004352 3300049571 Bacteria 15785
144 Ga0501034_0486709 3300049571 Bacteria 1148
145 Ga0501036_0261071 3300049572 Bacteria 1451
146 Ga0501036_0508562 3300049572 Unclassified 1002
147 Ga0501036_0662296 3300049572 Bacteria 864
148 Ga0501037_0425118 3300049573 Bacteria 909
149 Ga0501040_0193470 3300049576 Bacteria 1444
150 Ga0501041_0335911 3300049577 Bacteria 954
151 Ga0501043_0616098 3300049579 Bacteria 800
152 Ga0501047_1187735 3300049581 Bacteria 576
153 Ga0501067_0005766 3300049583 Bacteria 6872
154 Ga0501068_0064767 3300049584 Bacteria 2224
155 Ga0501068_0188372 3300049584 Bacteria 1306
156 Ga0501071_0084929 3300049587 Unclassified 2321
157 Ga0501073_0584949 3300049589 Bacteria 771
158 Ga0501075_0006621 3300049591 Bacteria 7985
159 Ga0501076_0550979 3300049592 Bacteria 951
160 Ga0501077_0000741 3300049593 Bacteria 19755
161 Ga0501080_0001251 3300049742 Bacteria 21158
162 Ga0501044_0655230 3300049823 Bacteria 939
163 Ga0501045_0603241 3300049824 Unclassified 813
164 nmdc:mga05p37_65_c1 3300050507 Bacteria 48888
165 nmdc:mga06r32_201832_c1 3300050510 Bacteria 1976
166 nmdc:mga06r32_74229_c1 3300050510 Unclassified 3297
167 nmdc:mga0n895_583128_c1 3300050512 Bacteria 1122
168 nmdc:mga0rr50_59_c1 3300050513 Bacteria 67019
169 nmdc:mga08x19_179008_c1 3300050514 Bacteria 1447
170 nmdc:mga08x19_191957_c1 3300050514 Bacteria 1398
171 Ga0495601_0161943 3300053077 Bacteria 1462
172 Ga0500646_0362261 3300053090 Unclassified 530
173 Ga0500614_004723 3300053123 Bacteria 2864
174 Ga0500627_0151646 3300053158 Bacteria 1047
175 Ga0500637_0334520 3300053178 Bacteria 812
176 Ga0587082_114103 3300059504 Unclassified 603
177 Ga0501082_0000493 3300060353 Bacteria 34881
178 Ga0501082_1027428 3300060353 Bacteria 721
179 Ga0530510_0105700 3300061734 Bacteria 2060
180 Ga0530510_0801869 3300061734 Bacteria 718

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300010159 Ga0099796_10058480 Ga0099796_100584802 114
2 3300049581 Ga0501047_1187735 Ga0501047_1187735_190_534 114
3 3300049571 Ga0501034_0004352 Ga0501034_0004352_10597_10944 115
4 3300013100 Ga0157373_10510748 Ga0157373_105107482 118
5 3300053158 Ga0500627_0151646 Ga0500627_0151646_306_668 120
6 3300005345 Ga0070692_10588312 Ga0070692_105883121 127
7 3300006358 Ga0068871_100548850 Ga0068871_1005488502 127
8 3300025944 Ga0207661_10527565 Ga0207661_105275652 128
9 3300013105 Ga0157369_10001271 Ga0157369_1000127129 129
10 3300025909 Ga0207705_10023757 Ga0207705_100237575 129
11 3300006237 Ga0097621_101002156 Ga0097621_1010021562 135
12 3300007076 Ga0075435_100560642 Ga0075435_1005606421 135
13 3300032133 Ga0316583_10051662 Ga0316583_100516623 135
14 3300005328 Ga0070676_11439131 Ga0070676_114391311 136
15 3300005844 Ga0068862_100009017 Ga0068862_1000090174 136
16 3300006847 Ga0075431_100217232 Ga0075431_1002172322 136
17 3300025907 Ga0207645_10859743 Ga0207645_108597431 136
18 3300028380 Ga0268265_10000452 Ga0268265_1000045215 136
19 3300049571 Ga0501034_0486709 Ga0501034_0486709_178_594 136
20 3300049572 Ga0501036_0261071 Ga0501036_0261071_160_576 136
21 3300049573 Ga0501037_0425118 Ga0501037_0425118_167_583 136
22 3300049579 Ga0501043_0616098 Ga0501043_0616098_359_775 136
23 3300049583 Ga0501067_0005766 Ga0501067_0005766_5204_5623 136
24 3300049584 Ga0501068_0064767 Ga0501068_0064767_448_867 136
25 3300049584 Ga0501068_0188372 Ga0501068_0188372_816_1235 136
26 3300049589 Ga0501073_0584949 Ga0501073_0584949_255_671 136
27 3300049591 Ga0501075_0006621 Ga0501075_0006621_1801_2220 136
28 3300049593 Ga0501077_0000741 Ga0501077_0000741_8845_9264 136
29 3300049742 Ga0501080_0001251 Ga0501080_0001251_3858_4277 136
30 3300049823 Ga0501044_0655230 Ga0501044_0655230_285_701 136
31 3300050510 nmdc:mga06r32_201832_c1 nmdc:mga06r32_201832_c1_893_1309 136
32 3300060353 Ga0501082_0000493 Ga0501082_0000493_1279_1698 136
33 3300061734 Ga0530510_0801869 Ga0530510_0801869_47_466 136
34 3300005337 Ga0070682_100009072 Ga0070682_1000090725 137
35 3300005455 Ga0070663_100009405 Ga0070663_1000094055 137
36 3300005466 Ga0070685_10040089 Ga0070685_100400891 137
37 3300014325 Ga0163163_10096508 Ga0163163_100965081 137
38 3300021361 Ga0213872_10000888 Ga0213872_1000088810 137
39 3300021361 Ga0213872_10300584 Ga0213872_103005842 137
40 3300026067 Ga0207678_10025407 Ga0207678_100254074 137
41 3300039447 Ga0436361_0289914 Ga0436361_0289914_668_1081 137
42 3300039447 Ga0436361_0368268 Ga0436361_0368268_645_1058 137
43 3300039447 Ga0436361_0826884 Ga0436361_0826884_550_963 137
44 3300021384 Ga0213876_10001063 Ga0213876_1000106314 138
45 3300039437 Ga0436365_0833878 Ga0436365_0833878_28200_28619 138
46 3300039437 Ga0436365_1132695 Ga0436365_1132695_3305_3724 138
47 3300039438 Ga0436360_0755696 Ga0436360_0755696_102_521 138
48 3300042438 Ga0439459_0040747 Ga0439459_0040747_26_454 138
49 3300005347 Ga0070668_101532095 Ga0070668_1015320951 139
50 3300005439 Ga0070711_100447392 Ga0070711_1004473922 139
51 3300005444 Ga0070694_100865964 Ga0070694_1008659642 139
52 3300005467 Ga0070706_100269540 Ga0070706_1002695402 139
53 3300005468 Ga0070707_100342212 Ga0070707_1003422122 139
54 3300005545 Ga0070695_100788672 Ga0070695_1007886722 139
55 3300006051 Ga0075364_10067171 Ga0075364_100671713 139
56 3300006173 Ga0070716_100075934 Ga0070716_1000759343 139
57 3300006358 Ga0068871_100071550 Ga0068871_1000715502 139
58 3300009101 Ga0105247_10036268 Ga0105247_100362684 139
59 3300009545 Ga0105237_10461582 Ga0105237_104615822 139
60 3300014968 Ga0157379_10124726 Ga0157379_101247263 139
61 3300025900 Ga0207710_10044576 Ga0207710_100445763 139
62 3300025910 Ga0207684_11067206 Ga0207684_110672062 139
63 3300025922 Ga0207646_10022061 Ga0207646_100220612 139
64 3300044842 Ga0466957_0000552 Ga0466957_0000552_11937_12359 139
65 3300005329 Ga0070683_100637401 Ga0070683_1006374011 140
66 3300005330 Ga0070690_100739781 Ga0070690_1007397811 140
67 3300005336 Ga0070680_100125702 Ga0070680_1001257022 140
68 3300005439 Ga0070711_100067148 Ga0070711_1000671481 140
69 3300005458 Ga0070681_10065706 Ga0070681_100657062 140
70 3300005530 Ga0070679_100223899 Ga0070679_1002238991 140
71 3300005545 Ga0070695_100409977 Ga0070695_1004099772 140
72 3300005578 Ga0068854_100054130 Ga0068854_1000541304 140
73 3300006163 Ga0070715_10222571 Ga0070715_102225712 140
74 3300009093 Ga0105240_10427314 Ga0105240_104273142 140
75 3300009176 Ga0105242_11636457 Ga0105242_116364572 140
76 3300009553 Ga0105249_11357061 Ga0105249_113570611 140
77 3300013104 Ga0157370_10055374 Ga0157370_100553744 140
78 3300013105 Ga0157369_10225378 Ga0157369_102253783 140
79 3300013105 Ga0157369_10622848 Ga0157369_106228482 140
80 3300013307 Ga0157372_10174331 Ga0157372_101743313 140
81 3300014326 Ga0157380_10462636 Ga0157380_104626362 140
82 3300020069 Ga0197907_10304210 Ga0197907_103042101 140
83 3300020078 Ga0206352_10459964 Ga0206352_104599642 140
84 3300022467 Ga0224712_10051714 Ga0224712_100517144 140
85 3300025905 Ga0207685_10357737 Ga0207685_103577371 140
86 3300025912 Ga0207707_10262260 Ga0207707_102622603 140
87 3300025912 Ga0207707_11560894 Ga0207707_115608942 140
88 3300025921 Ga0207652_10077380 Ga0207652_100773804 140
89 3300025944 Ga0207661_10277953 Ga0207661_102779532 140
90 3300025949 Ga0207667_10704260 Ga0207667_107042602 140
91 3300035119 Ga0373956_0036390 Ga0373956_0036390_963_1388 140
92 3300035692 Ga0373935_0290775 Ga0373935_0290775_490_915 140
93 3300035724 Ga0373933_0077091 Ga0373933_0077091_1161_1586 140
94 3300035725 Ga0373947_0585842 Ga0373947_0585842_133_558 140
95 3300036401 Ga0373937_0145029 Ga0373937_0145029_1572_1997 140
96 3300037068 Ga0373925_0382179 Ga0373925_0382179_136_561 140
97 3300046472 Ga0495580_0006130 Ga0495580_0006130_192_617 140
98 3300046472 Ga0495580_0027072 Ga0495580_0027072_568_993 140
99 3300046516 Ga0495628_0216406 Ga0495628_0216406_339_764 140
100 3300047472 Ga0495686_0024194 Ga0495686_0024194_1498_1923 140
101 3300053123 Ga0500614_004723 Ga0500614_004723_1584_2009 140
102 3300053178 Ga0500637_0334520 Ga0500637_0334520_218_643 140
103 3300059504 Ga0587082_114103 Ga0587082_114103_48_473 140
104 3300005295 Ga0065707_10083458 Ga0065707_100834585 141
105 3300005466 Ga0070685_10690306 Ga0070685_106903062 141
106 3300005616 Ga0068852_101309778 Ga0068852_1013097781 141
107 3300005719 Ga0068861_100267265 Ga0068861_1002672652 141
108 3300006173 Ga0070716_100016129 Ga0070716_1000161292 141
109 3300006847 Ga0075431_100041634 Ga0075431_1000416343 141
110 3300006880 Ga0075429_100449406 Ga0075429_1004494061 141
111 3300009147 Ga0114129_10005044 Ga0114129_100050448 141
112 3300009176 Ga0105242_10006141 Ga0105242_1000614110 141
113 3300009177 Ga0105248_10228480 Ga0105248_102284804 141
114 3300011119 Ga0105246_10099808 Ga0105246_100998082 141
115 3300013297 Ga0157378_10000035 Ga0157378_1000003570 141
116 3300021388 Ga0213875_10088045 Ga0213875_100880453 141
117 3300025934 Ga0207686_10007054 Ga0207686_100070543 141
118 3300025939 Ga0207665_10041874 Ga0207665_100418742 141
119 3300026118 Ga0207675_100036969 Ga0207675_1000369694 141
120 3300026142 Ga0207698_11247091 Ga0207698_112470911 141
121 3300037853 Ga0436364_0929376 Ga0436364_0929376_1838_2263 141
122 3300049572 Ga0501036_0508562 Ga0501036_0508562_515_958 141
123 3300049576 Ga0501040_0193470 Ga0501040_0193470_290_733 141
124 3300049577 Ga0501041_0335911 Ga0501041_0335911_47_487 141
125 3300049587 Ga0501071_0084929 Ga0501071_0084929_220_663 141
126 3300049592 Ga0501076_0550979 Ga0501076_0550979_397_840 141
127 3300049824 Ga0501045_0603241 Ga0501045_0603241_337_780 141
128 3300050507 nmdc:mga05p37_65_c1 nmdc:mga05p37_65_c1_37067_37501 141
129 3300050510 nmdc:mga06r32_74229_c1 nmdc:mga06r32_74229_c1_1072_1503 141
130 3300053090 Ga0500646_0362261 Ga0500646_0362261_32_466 141
131 3300005539 Ga0068853_100468526 Ga0068853_1004685261 142
132 3300005547 Ga0070693_100024745 Ga0070693_1000247453 142
133 3300006871 Ga0075434_100352987 Ga0075434_1003529873 142
134 3300006914 Ga0075436_100173894 Ga0075436_1001738942 142
135 3300021358 Ga0213873_10006069 Ga0213873_100060693 142
136 3300021384 Ga0213876_10000101 Ga0213876_1000010177 142
137 3300026041 Ga0207639_10214174 Ga0207639_102141743 142
138 3300035086 Ga0373934_0274081 Ga0373934_0274081_13_450 142
139 3300035112 Ga0373932_0000518 Ga0373932_0000518_1105_1548 142
140 3300035117 Ga0373953_0043124 Ga0373953_0043124_920_1357 142
141 3300035118 Ga0373954_0015082 Ga0373954_0015082_699_1136 142
142 3300035172 Ga0373955_0163210 Ga0373955_0163210_387_824 142
143 3300035410 Ga0373924_0027309 Ga0373924_0027309_790_1227 142
144 3300035692 Ga0373935_0195001 Ga0373935_0195001_52_489 142
145 3300036401 Ga0373937_0066749 Ga0373937_0066749_964_1401 142
146 3300039437 Ga0436365_0242367 Ga0436365_0242367_7421_7864 142
147 3300039453 Ga0436362_1005639 Ga0436362_1005639_5268_5711 142
148 3300046516 Ga0495628_0251708 Ga0495628_0251708_788_1225 142
149 3300046529 Ga0495652_0139477 Ga0495652_0139477_326_763 142
150 3300046543 Ga0495645_0492629 Ga0495645_0492629_184_621 142
151 3300046678 Ga0495599_0222408 Ga0495599_0222408_491_928 142
152 3300046679 Ga0495623_0467722 Ga0495623_0467722_149_586 142
153 3300049572 Ga0501036_0662296 Ga0501036_0662296_282_725 142
154 3300050512 nmdc:mga0n895_583128_c1 nmdc:mga0n895_583128_c1_414_857 142
155 3300050514 nmdc:mga08x19_191957_c1 nmdc:mga08x19_191957_c1_589_1032 142
156 3300053077 Ga0495601_0161943 Ga0495601_0161943_469_906 142
157 3300060353 Ga0501082_1027428 Ga0501082_1027428_28_471 142
158 3300061734 Ga0530510_0105700 Ga0530510_0105700_83_526 142
159 iso_pu_bacteria 2582581866 2585394203 142
160 3300005327 Ga0070658_10029122 Ga0070658_100291225 143
161 3300005329 Ga0070683_100312626 Ga0070683_1003126262 143
162 3300005440 Ga0070705_100092650 Ga0070705_1000926503 143
163 3300005468 Ga0070707_100697449 Ga0070707_1006974492 143
164 3300005539 Ga0068853_100454906 Ga0068853_1004549062 143
165 3300005547 Ga0070693_100150645 Ga0070693_1001506452 143
166 3300006237 Ga0097621_100108741 Ga0097621_1001087412 143
167 3300006914 Ga0075436_100003737 Ga0075436_10000373711 143
168 3300007076 Ga0075435_100000923 Ga0075435_1000009234 143
169 3300013297 Ga0157378_10001486 Ga0157378_1000148615 143
170 3300013308 Ga0157375_10000091 Ga0157375_1000009136 143
171 3300025929 Ga0207664_10466831 Ga0207664_104668313 143
172 3300025944 Ga0207661_10578355 Ga0207661_105783552 143
173 3300027665 Ga0209983_1017919 Ga0209983_10179192 143
174 3300027717 Ga0209998_10018552 Ga0209998_100185522 143
175 3300030521 Ga0307511_10035855 Ga0307511_100358552 143
176 3300050513 nmdc:mga0rr50_59_c1 nmdc:mga0rr50_59_c1_52961_53407 143
177 3300050514 nmdc:mga08x19_179008_c1 nmdc:mga08x19_179008_c1_509_955 143
178 3300003320 rootH2_10200624 rootH2_102006243 146
179 3300005262 Ga0065165_1035582 Ga0065165_10355823 146
180 3300046460 Ga0495638_0046391 Ga0495638_0046391_275_715 146
181 3300046660 Ga0495625_0116141 Ga0495625_0116141_1069_1509 146

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01850

PIN

PIN domain

8

137

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ifm-assembly1.cif.gz_C crystal structure of dna bound vapbc from salmonella typhimurium 0.9063 1 140
6ifm-assembly1.cif.gz_C crystal structure of dna bound vapbc from salmonella typhimurium 0.887 1 140
2h1c-assembly1.cif.gz_A crystal structure of fitacb from neisseria gonorrhoeae 0.8763 4 141
5ecw-assembly1.cif.gz_B structure of the shigella flexneri vapc mutant d7a 0.8712 1 140
6sd6-assembly1.cif.gz_C structure of vapbc from shigella sonnei 0.87 3 140
ID Description Score Start End Superfamily
5ecwB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.8712 1 140 3.40.50.1010
af_P9WFA7_1_124_3.40.50.1010 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.8542 4 132 3.40.50.1010
5ecwB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.8514 1 140 3.40.50.1010
6nklA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.846 1 142 3.40.50.1010
3zvkB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.8437 1 140 3.40.50.1010
ID Description Score Start End GO Terms
AF-A0A387H2Z1-F1-model_v4 Type II toxin-antitoxin system VapC family toxin 0.9896 3 146 GO:0004518
GO:0046872
AF-A0A7D7WMH7-F1-model_v4 deleted 0.9887 1 142
AF-A0A512H992-F1-model_v4 PIN domain-containing protein 0.9845 39 145 GO:0004518
GO:0046872
AF-A0A329A4W6-F1-model_v4 deleted 0.9841 3 146
AF-A0A0R3CT05-F1-model_v4 Twitching motility protein PilT 0.9788 27 143 GO:0004518
GO:0046872

Feature Viewer

pLDDT pTM Quality
93.41 0.87 High
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Predicted Structure (AlphaFold2)

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