F276525

General Info

Members Datasets Scaffolds Average Seq Length
180 158 360 666

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8055172936|8055177579
Length 802
Sequence RAGSCLTTRGTATPGRPVALHVVLDDSLSAIDGVPEDVMDDVPDTSDTPGEEAFDEEDLSAEEEDLPPVEELLRAAVAGVGGAERPGQVTMAKAVRNAIENDEHVAVQAGTGTGKSLAYLVPALRHAIESDSAVVVSTATIALQRQLVDRDLPRLSGSLADHLPHEPQFAILKGRRNYLCRYKLTAAWPDEEQDQLFDAREVSATGRMVQRIQEWAEETETGDRDELVPGVNEQAWRQFSVSAKECLGAQRCPSGPECFAEQARERAGQVDVVVTNHALLAIDAMEEFAVLPEHDVVVVDEAHELVDRVTSVVTDELSEITVSTAVRRVGRVIEQGVADRLQEAGEDLKALLSAAPPGRLDQLPQVLGVTLSVLRDAAFACLTAMGSRGGDMWGGSKKDDPEGAGQRKAAFTALDEVHDTAVRILEAFGGDSEVDRAEVVWLEGATDRRPALLKVAPLSVGGMLRDKLFADRTVILTSATLALGGTFDGMARQWGLGPARPSGDDPTSAQRPAEPTNAPDTPKTGDPRDQEARGGTGTAKTGNQRDRDSHSGTGAAKAGDQRDQESHSGTGDGSGQKRKAWTGLDVGSPFDHARSGILYIAKHLPQPGRDGLPKEYLDEIAELIEAAGGRTLGLFSSMRAAKAATEALRERIGMPLLCQGDDSTSLLVKQFAEDPATCLFGTLSLWQGVDVPGPSLSLVIIDRIPFPRPDDPLASARQRHVAARGGNGFMAVAATHAALLLAQGTGRLLRGQDDKGVVAVLDPRLATARYAGFLRDSLPPFWTTTDPTKVRAALRRLTTTPA

Samples

Sample ID Description Type Environment
1 3300003285 Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
2 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
15 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
21 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
22 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
23 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
24 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
25 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
40 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
41 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
42 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
43 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
44 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
45 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
46 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
47 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
48 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
49 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
50 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
51 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
52 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
53 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
54 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
55 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
56 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
57 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
58 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
59 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
60 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
61 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
62 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
63 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
64 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
65 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
66 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
67 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
68 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
69 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
70 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
71 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
72 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
73 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
74 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
75 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
76 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
77 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
78 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
79 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
80 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
81 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
82 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
83 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
84 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
85 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
86 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
87 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
88 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
89 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
90 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
99 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
100 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
103 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
104 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
105 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
106 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
107 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
108 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
109 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
110 2547132424 Nocardia nova SH22a Isolate Unclassified
111 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
112 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
113 2582580736 Prauserella sp. Am3 Isolate Unclassified
114 2643221692 Nocardia sp. Root136 Isolate Unclassified
115 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
116 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
117 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
118 2738541264 Mycobacterium sp. OK889 Isolate Unclassified
119 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
120 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
121 2738541356 Mycobacterium sp. OK887 Isolate Unclassified
122 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
123 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
124 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
125 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
126 2751185725 Microbispora sp. NRRL B-24597 Isolate Unclassified
127 2751185792 Kitasatospora arboriphila NRRL B-24581 Isolate Unclassified
128 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
129 2842134933 Mycolicibacterium obuense SEMIA 442 Isolate Nodule
130 2842888712 Tsukamurella sp. R-71941 Isolate Unclassified
131 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
132 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
133 2873314349 Sphaerisporangium siamense DSM 45784 Isolate Rhizosphere
134 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
135 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
136 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
137 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
138 2891562705 Microbispora tritici MT50 Isolate Unclassified
139 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
140 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
141 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
142 2902799365 Mycolicibacterium sp. P1-5 Isolate Unclassified
143 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
144 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
145 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
146 2908811453 Rhodococcus sp. 1R11 Isolate Unclassified
147 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
148 2919420072 Rhodococcus fascians 3241 Isolate Rhizosphere
149 2919432681 Rhodococcus sp. 3258 Isolate Rhizosphere
150 2922554459 Rhodococcus sp. 66b Isolate Unclassified
151 2928142448 Prescottella equi DPS 2018 Isolate Unclassified
152 2932398195 Dietzia sp. 2505 Isolate Rhizosphere
153 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
154 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
155 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
156 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
157 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
158 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 71.11
Metatranscriptomes 0.56
Isolates 28.33

Biome Distribution

Category Percentage (%)
Aerial Root 0.56
Bulb 0
Endosphere 2.22
Nodule 0.56
Rhizoplane 8.89
Rhizosphere 58.89
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0007423J48922_100614 3300003285 Bacteria 9741
2 Ga0055540_1000282 3300003792 Bacteria 45808
3 Ga0070682_100030156 3300005337 Bacteria 3271
4 Ga0070668_100022186 3300005347 Bacteria 4799
5 Ga0070667_100000999 3300005367 Bacteria 25956
6 Ga0070667_100005426 3300005367 Bacteria 10655
7 Ga0070709_10006274 3300005434 Bacteria 6476
8 Ga0070713_100059102 3300005436 Bacteria 3200
9 Ga0070710_10008086 3300005437 Bacteria 5114
10 Ga0070710_10012589 3300005437 Bacteria 4206
11 Ga0070711_100010582 3300005439 Bacteria 5712
12 Ga0070711_100016137 3300005439 Bacteria 4738
13 Ga0070707_100002206 3300005468 Bacteria 18585
14 Ga0070698_100030989 3300005471 Bacteria 5546
15 Ga0070698_100080168 3300005471 Bacteria 3260
16 Ga0070665_100020192 3300005548 Bacteria 6688
17 Ga0070717_10020666 3300006028 Bacteria 5181
18 Ga0070712_100003051 3300006175 Bacteria 10358
19 Ga0070712_100028017 3300006175 Bacteria 3765
20 Ga0075428_100177517 3300006844 Bacteria 2306
21 Ga0075431_100061517 3300006847 Bacteria 3874
22 Ga0075429_100043289 3300006880 Bacteria 3918
23 Ga0105245_10017233 3300009098 Bacteria 6303
24 Ga0114129_10011289 3300009147 Bacteria 12731
25 Ga0105243_10002023 3300009148 Bacteria 17224
26 Ga0157374_10057492 3300013296 Bacteria 3633
27 Ga0157379_10016757 3300014968 Bacteria 6449
28 Ga0213875_10004365 3300021388 Bacteria 7788
29 Ga0209051_1000048 3300025303 Bacteria 292755
30 Ga0207688_10001098 3300025901 Bacteria 13865
31 Ga0207699_10034939 3300025906 Bacteria 2856
32 Ga0207684_10027699 3300025910 Bacteria 4826
33 Ga0207693_10004004 3300025915 Bacteria 12528
34 Ga0207646_10003254 3300025922 Bacteria 18517
35 Ga0207700_10005719 3300025928 Bacteria 7470
36 Ga0207664_10007350 3300025929 Bacteria 7635
37 Ga0207706_10022370 3300025933 Bacteria 5673
38 Ga0207665_10000557 3300025939 Bacteria 25116
39 Ga0207665_10011865 3300025939 Bacteria 5722
40 Ga0207658_10028368 3300025986 Bacteria 3942
41 Ga0207678_10065044 3300026067 Bacteria 3133
42 Ga0207648_10040745 3300026089 Bacteria 4080
43 Ga0207675_100017833 3300026118 Bacteria 6624
44 Ga0207683_10030193 3300026121 Bacteria 4696
45 Ga0307515_10038398 3300028794 Bacteria 7661
46 Ga0265327_10001022 3300031251 Bacteria 39585
47 Ga0265327_10002048 3300031251 Bacteria 22665
48 Ga0307513_10006002 3300031456 Bacteria 15955
49 Ga0307413_10000394 3300031824 Bacteria 13965
50 Ga0373924_0003720 3300035410 Bacteria 5268
51 Ga0373931_0008722 3300035691 Bacteria 4825
52 Ga0316582_0044311 3300036647 Bacteria 2796
53 Ga0436364_0611274 3300037853 Bacteria 7818
54 Ga0436364_0619761 3300037853 Bacteria 11846
55 Ga0466972_0002909 3300044658 Bacteria 8479
56 Ga0466965_0018296 3300044683 Bacteria 3357
57 Ga0466960_0004114 3300044901 Bacteria 5658
58 Ga0466967_0001196 3300045976 Bacteria 14597
59 Ga0495592_0035085 3300046454 Bacteria 3780
60 Ga0495608_0015686 3300046511 Bacteria 5246
61 Ga0495618_0060534 3300046514 Bacteria 2401
62 Ga0495652_0025579 3300046529 Bacteria 5218
63 Ga0495665_0009310 3300046531 Bacteria 5319
64 Ga0495645_0005984 3300046543 Bacteria 8412
65 Ga0495667_0018971 3300046559 Bacteria 4642
66 Ga0495668_0000476 3300046616 Bacteria 50569
67 Ga0495635_0011535 3300046663 Bacteria 6193
68 Ga0495657_0004235 3300046675 Bacteria 11480
69 Ga0495599_0014809 3300046678 Bacteria 4829
70 Ga0495599_0035113 3300046678 Bacteria 3147
71 Ga0495623_0021412 3300046679 Bacteria 4173
72 Ga0495623_0044460 3300046679 Bacteria 2822
73 Ga0495646_0018842 3300046680 Bacteria 4371
74 Ga0495600_0016261 3300046809 Bacteria 4719
75 Ga0495581_0020253 3300047315 Bacteria 3861
76 Ga0495604_0022384 3300047317 Bacteria 5046
77 Ga0495604_0057321 3300047317 Bacteria 2995
78 Ga0495674_0001067 3300047319 Bacteria 26391
79 Ga0495674_0068012 3300047319 Bacteria 3084
80 Ga0495672_0015921 3300047320 Bacteria 5091
81 Ga0495683_0000971 3300047323 Bacteria 20051
82 Ga0495602_0034175 3300048088 Bacteria 4760
83 Ga0496100_0000146 3300048903 Bacteria 39001
84 Ga0496101_0000211 3300048904 Bacteria 44340
85 Ga0496103_0002626 3300048906 Bacteria 11259
86 Ga0496106_0006795 3300048909 Bacteria 8469
87 Ga0496106_0012435 3300048909 Bacteria 6285
88 Ga0496107_0000963 3300048910 Bacteria 17068
89 Ga0496108_0000821 3300048911 Bacteria 24144
90 Ga0496108_0004175 3300048911 Bacteria 11631
91 Ga0496108_0040151 3300048911 Bacteria 3900
92 Ga0496108_0041799 3300048911 Bacteria 3828
93 Ga0496109_0000258 3300048912 Bacteria 51192
94 Ga0496111_0013791 3300048914 Bacteria 5508
95 Ga0496112_0000478 3300048915 Bacteria 26831
96 Ga0496112_0001749 3300048915 Bacteria 17020
97 Ga0496113_0052857 3300048916 Bacteria 3036
98 Ga0496114_0000434 3300048917 Bacteria 30915
99 Ga0496118_0010036 3300048921 Bacteria 9439
100 Ga0496119_0007702 3300048922 Bacteria 9636
101 Ga0496121_0000981 3300048924 Bacteria 51076
102 Ga0496122_0000981 3300048925 Bacteria 51076
103 Ga0496123_0006986 3300048926 Bacteria 10765
104 Ga0496124_0000802 3300048927 Bacteria 51076
105 Ga0496125_0000805 3300048928 Bacteria 51076
106 Ga0496125_0082194 3300048928 Bacteria 2456
107 Ga0496126_0000914 3300048929 Bacteria 51076
108 Ga0496126_0001675 3300048929 Bacteria 33240
109 Ga0501032_0014829 3300049569 Bacteria 5515
110 Ga0501036_0012789 3300049572 Bacteria 6963
111 Ga0501037_0050045 3300049573 Bacteria 3059
112 Ga0501038_0075243 3300049574 Bacteria 2854
113 Ga0501043_0022674 3300049579 Bacteria 4923
114 Ga0501046_0001119 3300049580 Bacteria 26186
115 Ga0501047_0019629 3300049581 Bacteria 6485
116 Ga0501047_0024243 3300049581 Bacteria 5824
117 Ga0501047_0026322 3300049581 Bacteria 5596
118 Ga0501048_0035000 3300049582 Bacteria 3618
119 Ga0501070_0001404 3300049586 Bacteria 21565
120 Ga0501070_0023016 3300049586 Bacteria 5216
121 Ga0501074_0030697 3300049590 Bacteria 3894
122 Ga0501035_0002105 3300049822 Bacteria 19784
123 Ga0501044_0001501 3300049823 Bacteria 27346
124 nmdc:mga03n38_6720_c1 3300050490 Bacteria 4020
125 nmdc:mga05p37_39027_c1 3300050507 Bacteria 5826
126 nmdc:mga06r32_39122_c1 3300050510 Bacteria 4499
127 nmdc:mga08x19_4292_c1 3300050514 Bacteria 8447
128 Ga0495601_0044620 3300053077 Bacteria 2787
129 Ga0500645_000013 3300053730 Bacteria 154598
130 8055177579 8055172936 Bacteria 9305943
131 2523383205 2523231044 Bacteria 6434991
132 2548693545 2547132424 Bacteria 8348532
133 2552106257 2551306166 Bacteria 9731570
134 2566995393 2565956761 Bacteria 6601618
135 2583153225 2582580736 Bacteria 5325865
136 2644515009 2643221692 Bacteria 7282860
137 2645720026 2643221961 Bacteria 3919167
138 2645726891 2643221962 Bacteria 3874254
139 2676490889 2675903060 Bacteria 10051191
140 2738668840 2738541264 Bacteria 5935393
141 2738707749 2738541274 Bacteria 6909446
142 2738889488 2738541308 Bacteria 7020677
143 2739148032 2738541356 Bacteria 5935017
144 2739205292 2738543005 Bacteria 5278128
145 2739237453 2738543011 Bacteria 5731169
146 2739334089 2738543028 Bacteria 6917070
147 2739364066 2738543034 Bacteria 6084756
148 2753035365 2751185725 Bacteria 5740550
149 2753323882 2751185792 Bacteria 5739090
150 2816511281 2816332139 Bacteria 9138787
151 2842140157 2842134933 Bacteria 5847019
152 2842892431 2842888712 Bacteria 4279094
153 2848551894 2848551377 Bacteria 3720646
154 2856744016 2856741275 Bacteria 8096094
155 2873318853 2873314349 Bacteria 8512634
156 2884701214 2884693830 Bacteria 11273186
157 2889302595 2889300758 Bacteria 5690814
158 2891403463 2891395885 Bacteria 9251614
159 2891556786 2891554331 Bacteria 8812224
160 2891565866 2891562705 Bacteria 8039471
161 2895437356 2895427314 Bacteria 13147766
162 2895442895 2895442618 Bacteria 11027144
163 2899363436 2899359706 Bacteria 10940472
164 2902801973 2902799365 Bacteria 5419524
165 2904539661 2904535858 Bacteria 6308016
166 2904769700 2904765812 Bacteria 5369154
167 2904773288 2904770941 Bacteria 5580202
168 2908813766 2908811453 Bacteria 5478616
169 2917742091 2917736166 Bacteria 9690793
170 2919422287 2919420072 Bacteria 5390363
171 2919435460 2919432681 Bacteria 5390474
172 2922557711 2922554459 Bacteria 6683962
173 2928144983 2928142448 Bacteria 5288925
174 2932398447 2932398195 Bacteria 3847976
175 2939748476 2939743619 Bacteria 5762299
176 2974316628 2974315732 Bacteria 4602776
177 2984524803 2984523437 Bacteria 4508481
178 3003007135 3002998708 Bacteria 11715108
179 8003317390 8003314358 Bacteria 10575343
180 8055068864 8055066027 Bacteria 9479577
181 Ga0007423J48922_100614
182 Ga0055540_1000282
183 Ga0070682_100030156
184 Ga0070668_100022186
185 Ga0070667_100000999
186 Ga0070667_100005426
187 Ga0070709_10006274
188 Ga0070713_100059102
189 Ga0070710_10008086
190 Ga0070710_10012589
191 Ga0070711_100010582
192 Ga0070711_100016137
193 Ga0070707_100002206
194 Ga0070698_100030989
195 Ga0070698_100080168
196 Ga0070665_100020192
197 Ga0070717_10020666
198 Ga0070712_100003051
199 Ga0070712_100028017
200 Ga0075428_100177517
201 Ga0075431_100061517
202 Ga0075429_100043289
203 Ga0105245_10017233
204 Ga0114129_10011289
205 Ga0105243_10002023
206 Ga0157374_10057492
207 Ga0157379_10016757
208 Ga0213875_10004365
209 Ga0209051_1000048
210 Ga0207688_10001098
211 Ga0207699_10034939
212 Ga0207684_10027699
213 Ga0207693_10004004
214 Ga0207646_10003254
215 Ga0207700_10005719
216 Ga0207664_10007350
217 Ga0207706_10022370
218 Ga0207665_10000557
219 Ga0207665_10011865
220 Ga0207658_10028368
221 Ga0207678_10065044
222 Ga0207648_10040745
223 Ga0207675_100017833
224 Ga0207683_10030193
225 Ga0307515_10038398
226 Ga0265327_10001022
227 Ga0265327_10002048
228 Ga0307513_10006002
229 Ga0307413_10000394
230 Ga0373924_0003720
231 Ga0373931_0008722
232 Ga0316582_0044311
233 Ga0436364_0611274
234 Ga0436364_0619761
235 Ga0466972_0002909
236 Ga0466965_0018296
237 Ga0466960_0004114
238 Ga0466967_0001196
239 Ga0495592_0035085
240 Ga0495608_0015686
241 Ga0495618_0060534
242 Ga0495652_0025579
243 Ga0495665_0009310
244 Ga0495645_0005984
245 Ga0495667_0018971
246 Ga0495668_0000476
247 Ga0495635_0011535
248 Ga0495657_0004235
249 Ga0495599_0014809
250 Ga0495599_0035113
251 Ga0495623_0021412
252 Ga0495623_0044460
253 Ga0495646_0018842
254 Ga0495600_0016261
255 Ga0495581_0020253
256 Ga0495604_0022384
257 Ga0495604_0057321
258 Ga0495674_0001067
259 Ga0495674_0068012
260 Ga0495672_0015921
261 Ga0495683_0000971
262 Ga0495602_0034175
263 Ga0496100_0000146
264 Ga0496101_0000211
265 Ga0496103_0002626
266 Ga0496106_0006795
267 Ga0496106_0012435
268 Ga0496107_0000963
269 Ga0496108_0000821
270 Ga0496108_0004175
271 Ga0496108_0040151
272 Ga0496108_0041799
273 Ga0496109_0000258
274 Ga0496111_0013791
275 Ga0496112_0000478
276 Ga0496112_0001749
277 Ga0496113_0052857
278 Ga0496114_0000434
279 Ga0496118_0010036
280 Ga0496119_0007702
281 Ga0496121_0000981
282 Ga0496122_0000981
283 Ga0496123_0006986
284 Ga0496124_0000802
285 Ga0496125_0000805
286 Ga0496125_0082194
287 Ga0496126_0000914
288 Ga0496126_0001675
289 Ga0501032_0014829
290 Ga0501036_0012789
291 Ga0501037_0050045
292 Ga0501038_0075243
293 Ga0501043_0022674
294 Ga0501046_0001119
295 Ga0501047_0019629
296 Ga0501047_0024243
297 Ga0501047_0026322
298 Ga0501048_0035000
299 Ga0501070_0001404
300 Ga0501070_0023016
301 Ga0501074_0030697
302 Ga0501035_0002105
303 Ga0501044_0001501
304 nmdc:mga03n38_6720_c1
305 nmdc:mga05p37_39027_c1
306 nmdc:mga06r32_39122_c1
307 nmdc:mga08x19_4292_c1
308 Ga0495601_0044620
309 Ga0500645_000013
310 8055177579
311 2523383205
312 2548693545
313 2552106257
314 2566995393
315 2583153225
316 2644515009
317 2645720026
318 2645726891
319 2676490889
320 2738668840
321 2738707749
322 2738889488
323 2739148032
324 2739205292
325 2739237453
326 2739334089
327 2739364066
328 2753035365
329 2753323882
330 2816511281
331 2842140157
332 2842892431
333 2848551894
334 2856744016
335 2873318853
336 2884701214
337 2889302595
338 2891403463
339 2891556786
340 2891565866
341 2895437356
342 2895442895
343 2899363436
344 2902801973
345 2904539661
346 2904769700
347 2904773288
348 2908813766
349 2917742091
350 2919422287
351 2919435460
352 2922557711
353 2928144983
354 2932398447
355 2939748476
356 2974316628
357 2984524803
358 3003007135
359 8003317390
360 8055068864

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13307

Helicase_C_2

Helicase C-terminal domain

620

781

0.98

PF00270

DEAD

DEAD/DEAH box helicase

89

161

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6fwr-assembly1.cif.gz_A structure of ding in complex with ssdna 0.7292 8 662
6fws-assembly1.cif.gz_B structure of ding in complex with ssdna and adpbef 0.7249 8 662
6fws-assembly1.cif.gz_A structure of ding in complex with ssdna and adpbef 0.7129 5 662
6fwr-assembly1.cif.gz_A structure of ding in complex with ssdna 0.705 8 662
6fws-assembly1.cif.gz_B structure of ding in complex with ssdna and adpbef 0.7012 8 662
ID Description Score Start End Superfamily
af_P9WMR5_468_655_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9838 491 675 3.40.50.300
af_P9WMR5_468_655_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9632 491 675 3.40.50.300
af_P76257_437_627_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9058 486 669 3.40.50.300
af_P76257_437_627_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8699 486 669 3.40.50.300
af_P9WMR5_23_298_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8578 32 315 3.40.50.300
ID Description Score Start End GO Terms
AF-J0N9X6-F1-model_v4 Helicase C-terminal domain protein 0.9802 496 678 GO:0003676
GO:0004386
GO:0005524
GO:0006139
GO:0016818
AF-A0A2Z5QZ04-F1-model_v4 DinG family ATP-dependent helicase YoaA 0.9788 579 678 GO:0003676
GO:0004386
GO:0005524
GO:0006139
GO:0006974
GO:0016818
AF-A0A7Y4JLT7-F1-model_v4 deleted 0.9749 534 671
AF-A0A7Y4JLT7-F1-model_v4 deleted 0.9612 534 671
AF-A0A7V0IS78-F1-model_v4 ATP-dependent helicase 0.9603 508 676 GO:0003676
GO:0003678
GO:0005524
GO:0006139
GO:0006974
GO:0016818

Map