F275880

General Info

Members Datasets Scaffolds Average Seq Length
180 79 179 262

Family's Representative Sequence

Representative Sequence 3300031903|Ga0307407_10000250|Ga0307407_1000025012
Length 292
Sequence MIRRARFIGKFPLRRVRFFAPMTVQMDRIAQAFARARAENRAAFVAYLCAGDPDFDTSLAACRALIESGVDVLELGVPFSDPLADGLTNQLAAQRSLEGGMTAGRVFELVRRIREFAPSTPLVFYTYYNLVFSNGVEAYVRAAKEAGVDGMLTLDLPPEEAADVQAACAKHDLKTVFIVAPTTPEARLARIGAAATGFIYYVSREGVTGVRDSVAANVPEAVAAIKRHTSLPVVVGFGIGKRAHVAEVAAHADGVVVGSALVNCIRENLTERAKIAPVLKVRATDLVAGTKR

Samples

Sample ID Description Type Environment
1 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
15 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
16 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
17 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
18 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
19 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
28 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
29 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
30 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
31 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
32 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
33 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
34 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
35 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
36 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
37 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
38 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
39 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
40 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
41 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
42 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
43 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
44 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
47 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
48 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
49 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
50 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
51 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
52 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
53 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
54 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
55 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
56 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
57 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
58 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
59 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
60 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
62 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
63 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
73 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
74 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
75 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
76 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
78 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
79 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.44
Metatranscriptomes 0
Isolates 0.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.11
Nodule 0
Rhizoplane 0
Rhizosphere 95
Stem 0
Stem Tuber 0
Unclassified 3.89

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10014988 3300003320 Bacteria 15548
2 rootH2_10034943 3300003320 Bacteria 13029
3 rootL2_10060340 3300003322 Bacteria 11882
4 rootH1_10058550 3300003323 Bacteria 7580
5 rootH1_10149485 3300003323 Unclassified 2116
6 rootH1_10366848 3300003323 Bacteria 1494
7 Ga0070658_10094165 3300005327 Bacteria 2471
8 Ga0068869_100002030 3300005334 Bacteria 12166
9 Ga0068868_100223246 3300005338 Bacteria 1578
10 Ga0068867_100008591 3300005459 Bacteria 7210
11 Ga0070679_100019415 3300005530 Bacteria 6609
12 Ga0068855_100370300 3300005563 Unclassified 1575
13 Ga0068856_100000714 3300005614 Bacteria 36072
14 Ga0068864_100111743 3300005618 Bacteria 2435
15 Ga0070717_10000016 3300006028 Bacteria 205932
16 Ga0097621_100013090 3300006237 Bacteria 6171
17 Ga0068871_100001317 3300006358 Bacteria 16587
18 Ga0068865_100012638 3300006881 Bacteria 5319
19 Ga0157369_10106408 3300013105 Unclassified 2985
20 Ga0163163_10161307 3300014325 Bacteria 2287
21 Ga0207652_10051534 3300025921 Bacteria 3529
22 Ga0207704_10081450 3300025938 Bacteria 2094
23 Ga0207689_10000798 3300025942 Bacteria 30343
24 Ga0207661_10429325 3300025944 Unclassified 1201
25 Ga0207677_10221198 3300026023 Bacteria 1518
26 Ga0207702_10001845 3300026078 Bacteria 20860
27 Ga0207648_10005102 3300026089 Bacteria 13303
28 Ga0207676_10152133 3300026095 Bacteria 1994
29 Ga0265337_1011082 3300028556 Bacteria 3123
30 Ga0265337_1049202 3300028556 Bacteria 1191
31 Ga0265319_1000080 3300028563 Bacteria 75462
32 Ga0265319_1000163 3300028563 Bacteria 50418
33 Ga0265319_1002709 3300028563 Bacteria 9503
34 Ga0265319_1005886 3300028563 Bacteria 5773
35 Ga0265319_1008095 3300028563 Bacteria 4642
36 Ga0265319_1016901 3300028563 Bacteria 2790
37 Ga0265319_1023464 3300028563 Bacteria 2236
38 Ga0265319_1027230 3300028563 Bacteria 2029
39 Ga0265334_10001734 3300028573 Bacteria 10430
40 Ga0265334_10014143 3300028573 Bacteria 3329
41 Ga0265334_10028091 3300028573 Bacteria 2263
42 Ga0265318_10000005 3300028577 Bacteria 303630
43 Ga0265318_10000673 3300028577 Bacteria 23298
44 Ga0265318_10001511 3300028577 Bacteria 13550
45 Ga0265318_10003922 3300028577 Bacteria 7331
46 Ga0265318_10004451 3300028577 Bacteria 6792
47 Ga0265318_10005201 3300028577 Bacteria 6143
48 Ga0265318_10011009 3300028577 Bacteria 3915
49 Ga0265318_10037432 3300028577 Bacteria 1858
50 Ga0265323_10000262 3300028653 Bacteria 30876
51 Ga0265322_10002531 3300028654 Bacteria 5626
52 Ga0265322_10060931 3300028654 Bacteria 1070
53 Ga0265336_10000790 3300028666 Bacteria 16725
54 Ga0265336_10002044 3300028666 Bacteria 8604
55 Ga0265336_10023767 3300028666 Bacteria 1941
56 Ga0265338_10000259 3300028800 Bacteria 96351
57 Ga0265338_10012470 3300028800 Bacteria 9689
58 Ga0265338_10046614 3300028800 Bacteria 3970
59 Ga0265324_10007717 3300029957 Bacteria 4329
60 Ga0265332_10042018 3300031238 Unclassified 1977
61 Ga0265320_10000309 3300031240 Bacteria 39981
62 Ga0265320_10000571 3300031240 Bacteria 28297
63 Ga0265320_10000579 3300031240 Bacteria 28156
64 Ga0265320_10000634 3300031240 Bacteria 26857
65 Ga0265320_10000788 3300031240 Bacteria 24212
66 Ga0265320_10000823 3300031240 Bacteria 23388
67 Ga0265320_10001489 3300031240 Bacteria 17081
68 Ga0265320_10002504 3300031240 Bacteria 12780
69 Ga0265320_10006162 3300031240 Bacteria 7594
70 Ga0265320_10012168 3300031240 Bacteria 5023
71 Ga0265320_10014785 3300031240 Bacteria 4427
72 Ga0265320_10027693 3300031240 Bacteria 2951
73 Ga0265320_10057580 3300031240 Bacteria 1864
74 Ga0265325_10008252 3300031241 Bacteria 6155
75 Ga0265325_10019418 3300031241 Bacteria 3757
76 Ga0265340_10011259 3300031247 Bacteria 4761
77 Ga0265339_10061532 3300031249 Bacteria 2020
78 Ga0265339_10100660 3300031249 Bacteria 1505
79 Ga0265331_10017559 3300031250 Bacteria 3727
80 Ga0265331_10019171 3300031250 Bacteria 3536
81 Ga0265331_10087751 3300031250 Bacteria 1440
82 Ga0265327_10000091 3300031251 Bacteria 196369
83 Ga0265327_10002161 3300031251 Bacteria 21650
84 Ga0265327_10020103 3300031251 Bacteria 4081
85 Ga0265327_10075345 3300031251 Bacteria 1678
86 Ga0265316_10008513 3300031344 Bacteria 9510
87 Ga0265316_10039484 3300031344 Bacteria 3790
88 Ga0265316_10119707 3300031344 Bacteria 1989
89 Ga0265316_10231588 3300031344 Bacteria 1360
90 Ga0265316_10345091 3300031344 Bacteria 1078
91 Ga0307408_100000033 3300031548 Bacteria 212574
92 Ga0265313_10000669 3300031595 Bacteria 35282
93 Ga0265313_10001351 3300031595 Bacteria 23097
94 Ga0265313_10005460 3300031595 Bacteria 9346
95 Ga0265313_10005740 3300031595 Bacteria 9032
96 Ga0265313_10006687 3300031595 Bacteria 8080
97 Ga0265313_10016127 3300031595 Bacteria 4311
98 Ga0265313_10077301 3300031595 Bacteria 1519
99 Ga0265313_10124403 3300031595 Bacteria 1122
100 Ga0265314_10001971 3300031711 Bacteria 21811
101 Ga0265314_10002296 3300031711 Bacteria 19757
102 Ga0265314_10009018 3300031711 Bacteria 8481
103 Ga0265314_10019974 3300031711 Bacteria 5179
104 Ga0265314_10150978 3300031711 Bacteria 1424
105 Ga0265314_10152694 3300031711 Bacteria 1414
106 Ga0265342_10025521 3300031712 Bacteria 3713
107 Ga0265342_10045216 3300031712 Bacteria 2652
108 Ga0265342_10084617 3300031712 Bacteria 1826
109 Ga0265342_10223923 3300031712 Bacteria 1012
110 Ga0307410_10000008 3300031852 Bacteria 93917
111 Ga0307407_10000250 3300031903 Bacteria 15961
112 Ga0307412_10160486 3300031911 Bacteria 1669
113 Ga0307409_100000073 3300031995 Bacteria 36254
114 Ga0307416_100000022 3300032002 Bacteria 188660
115 Ga0373935_0298074 3300035692 Bacteria 1139
116 Ga0395905_0000036 3300037471 Bacteria 271733
117 Ga0395905_0084859 3300037471 Bacteria 2968
118 Ga0451577_0000024 3300042876 Bacteria 411758
119 Ga0451577_0000889 3300042876 Bacteria 44337
120 Ga0451577_0044084 3300042876 Bacteria 3993
121 Ga0451577_0048421 3300042876 Bacteria 3797
122 Ga0451577_0180679 3300042876 Bacteria 1902
123 Ga0453683_0000264 3300044673 Bacteria 68669
124 Ga0453684_0000045 3300044712 Bacteria 582917
125 Ga0453684_0019398 3300044712 Bacteria 10356
126 Ga0453684_0042771 3300044712 Bacteria 6101
127 Ga0453684_0050764 3300044712 Bacteria 5450
128 Ga0453684_0069429 3300044712 Bacteria 4469
129 Ga0453684_0200060 3300044712 Bacteria 2330
130 Ga0453684_0897537 3300044712 Bacteria 949
131 Ga0451576_0001292 3300045051 Bacteria 43381
132 Ga0451576_0028071 3300045051 Bacteria 6033
133 Ga0451576_0075274 3300045051 Bacteria 3512
134 Ga0451576_0352421 3300045051 Bacteria 1541
135 Ga0451576_0415946 3300045051 Bacteria 1410
136 Ga0466967_0009419 3300045976 Bacteria 7243
137 Ga0501031_0102916 3300049568 Bacteria 1863
138 Ga0501032_0000722 3300049569 Bacteria 26920
139 Ga0501032_0001747 3300049569 Bacteria 17137
140 Ga0501033_0004657 3300049570 Bacteria 10973
141 Ga0501033_0015870 3300049570 Bacteria 5705
142 Ga0501034_0055867 3300049571 Bacteria 3973
143 Ga0501034_0384728 3300049571 Bacteria 1327
144 Ga0501036_0002969 3300049572 Bacteria 13475
145 Ga0501036_0120052 3300049572 Bacteria 2220
146 Ga0501037_0039638 3300049573 Bacteria 3467
147 Ga0501037_0041862 3300049573 Bacteria 3367
148 Ga0501037_0381903 3300049573 Bacteria 968
149 Ga0501038_0001965 3300049574 Bacteria 18969
150 Ga0501039_0129611 3300049575 Bacteria 1979
151 Ga0501043_0064874 3300049579 Bacteria 2867
152 Ga0501046_0001850 3300049580 Bacteria 20144
153 Ga0501046_0004817 3300049580 Bacteria 12162
154 Ga0501046_0016589 3300049580 Bacteria 6162
155 Ga0501046_0017580 3300049580 Bacteria 5964
156 Ga0501046_0504098 3300049580 Bacteria 866
157 Ga0501047_0001901 3300049581 Bacteria 20079
158 Ga0501047_0048858 3300049581 Bacteria 4085
159 Ga0501047_0057633 3300049581 Bacteria 3756
160 Ga0501047_0085002 3300049581 Bacteria 3040
161 Ga0501047_0336594 3300049581 Bacteria 1347
162 Ga0501047_0374402 3300049581 Bacteria 1259
163 Ga0501048_0042440 3300049582 Bacteria 3256
164 Ga0501070_0055958 3300049586 Bacteria 3270
165 Ga0501243_001084 3300049675 Bacteria 3837
166 Ga0501080_0059091 3300049742 Bacteria 3569
167 Ga0501080_0128624 3300049742 Bacteria 2345
168 Ga0501083_0001331 3300049744 Bacteria 16739
169 Ga0501083_0014762 3300049744 Bacteria 5463
170 Ga0501083_0030656 3300049744 Bacteria 3693
171 Ga0501083_0061574 3300049744 Bacteria 2505
172 Ga0501035_0000780 3300049822 Bacteria 34053
173 Ga0501035_0031154 3300049822 Bacteria 4857
174 Ga0501035_0041937 3300049822 Bacteria 4130
175 Ga0501044_0000226 3300049823 Bacteria 71150
176 Ga0501044_0002595 3300049823 Bacteria 20534
177 Ga0501044_0038916 3300049823 Bacteria 4965
178 Ga0500568_0026455 3300053139 Bacteria 2435
179 Ga0500622_0041015 3300053156 Bacteria 2410

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028563 Ga0265319_1002709 Ga0265319_10027097 205
2 3300028577 Ga0265318_10011009 Ga0265318_100110093 205
3 3300031240 Ga0265320_10000571 Ga0265320_1000057110 205
4 3300028563 Ga0265319_1016901 Ga0265319_10169012 218
5 3300031595 Ga0265313_10077301 Ga0265313_100773012 218
6 3300031711 Ga0265314_10152694 Ga0265314_101526942 218
7 3300049569 Ga0501032_0000722 Ga0501032_0000722_18791_19588 226
8 3300049572 Ga0501036_0120052 Ga0501036_0120052_498_1295 226
9 3300049573 Ga0501037_0381903 Ga0501037_0381903_139_936 226
10 3300049580 Ga0501046_0004817 Ga0501046_0004817_5128_5925 226
11 3300049580 Ga0501046_0016589 Ga0501046_0016589_3980_4777 226
12 3300049581 Ga0501047_0001901 Ga0501047_0001901_10805_11602 226
13 3300049822 Ga0501035_0000780 Ga0501035_0000780_9040_9837 226
14 3300049823 Ga0501044_0000226 Ga0501044_0000226_33130_33927 226
15 3300049744 Ga0501083_0061574 Ga0501083_0061574_923_1747 227
16 3300028563 Ga0265319_1000080 Ga0265319_10000803 228
17 3300028577 Ga0265318_10001511 Ga0265318_100015119 228
18 3300028654 Ga0265322_10060931 Ga0265322_100609312 228
19 3300031240 Ga0265320_10000823 Ga0265320_1000082317 228
20 3300031595 Ga0265313_10005460 Ga0265313_100054608 228
21 3300031711 Ga0265314_10019974 Ga0265314_100199745 228
22 3300049580 Ga0501046_0504098 Ga0501046_0504098_24_767 228
23 3300028666 Ga0265336_10023767 Ga0265336_100237671 229
24 3300044673 Ga0453683_0000264 Ga0453683_0000264_63346_64146 229
25 3300028573 Ga0265334_10028091 Ga0265334_100280912 230
26 3300028800 Ga0265338_10000259 Ga0265338_1000025970 230
27 3300028800 Ga0265338_10046614 Ga0265338_100466142 230
28 3300031241 Ga0265325_10008252 Ga0265325_100082526 230
29 3300031247 Ga0265340_10011259 Ga0265340_100112592 230
30 3300031595 Ga0265313_10005740 Ga0265313_100057402 230
31 3300049744 Ga0501083_0014762 Ga0501083_0014762_773_1573 230
32 3300003323 rootH1_10366848 rootH1_103668482 231
33 3300028556 Ga0265337_1011082 Ga0265337_10110823 231
34 3300028577 Ga0265318_10005201 Ga0265318_100052013 231
35 3300028666 Ga0265336_10000790 Ga0265336_1000079013 231
36 3300028800 Ga0265338_10012470 Ga0265338_100124707 231
37 3300029957 Ga0265324_10007717 Ga0265324_100077173 231
38 3300031240 Ga0265320_10006162 Ga0265320_100061627 231
39 3300031241 Ga0265325_10019418 Ga0265325_100194182 231
40 3300031251 Ga0265327_10020103 Ga0265327_100201033 231
41 3300031344 Ga0265316_10008513 Ga0265316_100085133 231
42 3300031595 Ga0265313_10124403 Ga0265313_101244031 231
43 3300031711 Ga0265314_10001971 Ga0265314_1000197120 231
44 3300031712 Ga0265342_10045216 Ga0265342_100452163 231
45 3300049744 Ga0501083_0001331 Ga0501083_0001331_1025_1825 233
46 3300014325 Ga0163163_10161307 Ga0163163_101613072 236
47 3300044712 Ga0453684_0897537 Ga0453684_0897537_46_846 236
48 3300042876 Ga0451577_0000889 Ga0451577_0000889_27935_28738 237
49 3300028573 Ga0265334_10014143 Ga0265334_100141435 238
50 3300028653 Ga0265323_10000262 Ga0265323_1000026221 238
51 3300031712 Ga0265342_10223923 Ga0265342_102239231 238
52 3300045051 Ga0451576_0352421 Ga0451576_0352421_571_1371 238
53 3300044712 Ga0453684_0069429 Ga0453684_0069429_2574_3374 239
54 3300028556 Ga0265337_1049202 Ga0265337_10492022 240
55 3300028563 Ga0265319_1027230 Ga0265319_10272303 240
56 3300028577 Ga0265318_10000673 Ga0265318_100006734 240
57 3300031240 Ga0265320_10000788 Ga0265320_100007887 240
58 3300031249 Ga0265339_10100660 Ga0265339_101006602 240
59 3300031344 Ga0265316_10231588 Ga0265316_102315882 240
60 3300031712 Ga0265342_10084617 Ga0265342_100846172 240
61 3300005530 Ga0070679_100019415 Ga0070679_1000194157 241
62 3300025921 Ga0207652_10051534 Ga0207652_100515342 241
63 3300042876 Ga0451577_0000024 Ga0451577_0000024_251311_252108 241
64 3300006028 Ga0070717_10000016 Ga0070717_1000001685 242
65 3300045976 Ga0466967_0009419 Ga0466967_0009419_5440_6249 242
66 3300005614 Ga0068856_100000714 Ga0068856_1000007146 243
67 3300026078 Ga0207702_10001845 Ga0207702_100018457 243
68 3300028654 Ga0265322_10002531 Ga0265322_100025314 243
69 3300031344 Ga0265316_10345091 Ga0265316_103450911 243
70 3300031712 Ga0265342_10025521 Ga0265342_100255214 243
71 iso_pu_bacteria 2786546940 2788437251 243
72 3300031595 Ga0265313_10000669 Ga0265313_1000066924 244
73 3300031711 Ga0265314_10009018 Ga0265314_100090189 244
74 3300037471 Ga0395905_0084859 Ga0395905_0084859_526_1410 244
75 3300003320 rootH2_10034943 rootH2_100349438 246
76 3300028563 Ga0265319_1008095 Ga0265319_10080955 246
77 3300028563 Ga0265319_1023464 Ga0265319_10234642 246
78 3300031240 Ga0265320_10012168 Ga0265320_100121686 246
79 3300031240 Ga0265320_10027693 Ga0265320_100276932 246
80 3300031250 Ga0265331_10019171 Ga0265331_100191711 246
81 3300031250 Ga0265331_10087751 Ga0265331_100877512 246
82 3300031251 Ga0265327_10000091 Ga0265327_10000091178 246
83 3300031251 Ga0265327_10002161 Ga0265327_1000216117 246
84 3300031344 Ga0265316_10119707 Ga0265316_101197071 246
85 3300031595 Ga0265313_10016127 Ga0265313_100161273 246
86 3300042876 Ga0451577_0044084 Ga0451577_0044084_1419_2216 246
87 3300044712 Ga0453684_0019398 Ga0453684_0019398_1585_2382 246
88 3300044712 Ga0453684_0050764 Ga0453684_0050764_2013_2810 246
89 3300045051 Ga0451576_0415946 Ga0451576_0415946_157_954 246
90 3300049571 Ga0501034_0055867 Ga0501034_0055867_1181_1978 246
91 3300053139 Ga0500568_0026455 Ga0500568_0026455_1304_2101 246
92 3300053156 Ga0500622_0041015 Ga0500622_0041015_700_1497 246
93 3300003322 rootL2_10060340 rootL2_100603406 247
94 3300003323 rootH1_10058550 rootH1_100585507 247
95 3300005334 Ga0068869_100002030 Ga0068869_1000020302 247
96 3300005338 Ga0068868_100223246 Ga0068868_1002232462 247
97 3300005459 Ga0068867_100008591 Ga0068867_1000085917 247
98 3300005563 Ga0068855_100370300 Ga0068855_1003703002 247
99 3300006237 Ga0097621_100013090 Ga0097621_1000130908 247
100 3300006358 Ga0068871_100001317 Ga0068871_10000131713 247
101 3300006881 Ga0068865_100012638 Ga0068865_1000126386 247
102 3300013105 Ga0157369_10106408 Ga0157369_101064083 247
103 3300025938 Ga0207704_10081450 Ga0207704_100814502 247
104 3300025942 Ga0207689_10000798 Ga0207689_100007987 247
105 3300025944 Ga0207661_10429325 Ga0207661_104293252 247
106 3300026023 Ga0207677_10221198 Ga0207677_102211982 247
107 3300026089 Ga0207648_10005102 Ga0207648_1000510213 247
108 3300028573 Ga0265334_10001734 Ga0265334_100017347 247
109 3300028577 Ga0265318_10000005 Ga0265318_10000005111 247
110 3300031238 Ga0265332_10042018 Ga0265332_100420181 247
111 3300031240 Ga0265320_10001489 Ga0265320_100014896 247
112 3300031240 Ga0265320_10014785 Ga0265320_100147855 247
113 3300031249 Ga0265339_10061532 Ga0265339_100615322 247
114 3300031250 Ga0265331_10017559 Ga0265331_100175592 247
115 3300031548 Ga0307408_100000033 Ga0307408_100000033110 247
116 3300031711 Ga0265314_10002296 Ga0265314_100022967 247
117 3300031852 Ga0307410_10000008 Ga0307410_1000000865 247
118 3300031903 Ga0307407_10000250 Ga0307407_1000025012 247
119 3300031911 Ga0307412_10160486 Ga0307412_101604861 247
120 3300031995 Ga0307409_100000073 Ga0307409_10000007328 247
121 3300032002 Ga0307416_100000022 Ga0307416_10000002214 247
122 3300037471 Ga0395905_0000036 Ga0395905_0000036_218016_218816 247
123 3300044712 Ga0453684_0042771 Ga0453684_0042771_4850_5650 247
124 3300045051 Ga0451576_0001292 Ga0451576_0001292_32572_33372 247
125 3300045051 Ga0451576_0028071 Ga0451576_0028071_4325_5125 247
126 3300045051 Ga0451576_0075274 Ga0451576_0075274_2634_3434 247
127 3300049568 Ga0501031_0102916 Ga0501031_0102916_156_956 247
128 3300049569 Ga0501032_0001747 Ga0501032_0001747_6681_7481 247
129 3300049570 Ga0501033_0015870 Ga0501033_0015870_3931_4731 247
130 3300049571 Ga0501034_0384728 Ga0501034_0384728_151_951 247
131 3300049572 Ga0501036_0002969 Ga0501036_0002969_4417_5217 247
132 3300049573 Ga0501037_0039638 Ga0501037_0039638_2644_3444 247
133 3300049574 Ga0501038_0001965 Ga0501038_0001965_10172_10972 247
134 3300049575 Ga0501039_0129611 Ga0501039_0129611_536_1336 247
135 3300049579 Ga0501043_0064874 Ga0501043_0064874_600_1400 247
136 3300049581 Ga0501047_0085002 Ga0501047_0085002_24_824 247
137 3300049581 Ga0501047_0336594 Ga0501047_0336594_373_1173 247
138 3300049581 Ga0501047_0374402 Ga0501047_0374402_437_1237 247
139 3300049582 Ga0501048_0042440 Ga0501048_0042440_30_830 247
140 3300049586 Ga0501070_0055958 Ga0501070_0055958_100_900 247
141 3300049675 Ga0501243_001084 Ga0501243_001084_1589_2389 247
142 3300049742 Ga0501080_0059091 Ga0501080_0059091_67_867 247
143 3300049744 Ga0501083_0030656 Ga0501083_0030656_2778_3578 247
144 3300049822 Ga0501035_0031154 Ga0501035_0031154_3211_4011 247
145 3300049823 Ga0501044_0002595 Ga0501044_0002595_7623_8423 247
146 3300049823 Ga0501044_0038916 Ga0501044_0038916_1949_2749 247
147 3300005327 Ga0070658_10094165 Ga0070658_100941653 248
148 3300005618 Ga0068864_100111743 Ga0068864_1001117433 248
149 3300026095 Ga0207676_10152133 Ga0207676_101521332 248
150 3300028563 Ga0265319_1005886 Ga0265319_10058863 248
151 3300028577 Ga0265318_10003922 Ga0265318_100039227 248
152 3300028577 Ga0265318_10004451 Ga0265318_100044513 248
153 3300028666 Ga0265336_10002044 Ga0265336_100020445 248
154 3300031240 Ga0265320_10000309 Ga0265320_1000030913 248
155 3300031240 Ga0265320_10000579 Ga0265320_100005796 248
156 3300031240 Ga0265320_10002504 Ga0265320_100025048 248
157 3300031251 Ga0265327_10075345 Ga0265327_100753452 248
158 3300031344 Ga0265316_10039484 Ga0265316_100394842 248
159 3300031595 Ga0265313_10001351 Ga0265313_1000135117 248
160 3300031595 Ga0265313_10006687 Ga0265313_100066872 248
161 3300031711 Ga0265314_10150978 Ga0265314_101509782 248
162 3300035692 Ga0373935_0298074 Ga0373935_0298074_153_956 248
163 3300049580 Ga0501046_0017580 Ga0501046_0017580_2713_3516 248
164 3300049581 Ga0501047_0057633 Ga0501047_0057633_1775_2578 248
165 3300049822 Ga0501035_0041937 Ga0501035_0041937_1908_2711 248
166 3300031240 Ga0265320_10057580 Ga0265320_100575802 249
167 3300042876 Ga0451577_0180679 Ga0451577_0180679_22_828 249
168 3300044712 Ga0453684_0200060 Ga0453684_0200060_1250_2059 249
169 3300003320 rootH2_10014988 rootH2_1001498811 250
170 3300003323 rootH1_10149485 rootH1_101494853 250
171 3300028563 Ga0265319_1000163 Ga0265319_100016334 250
172 3300028577 Ga0265318_10037432 Ga0265318_100374322 250
173 3300031240 Ga0265320_10000634 Ga0265320_1000063417 250
174 3300042876 Ga0451577_0048421 Ga0451577_0048421_364_1182 250
175 3300044712 Ga0453684_0000045 Ga0453684_0000045_365006_365824 250
176 3300049570 Ga0501033_0004657 Ga0501033_0004657_806_1618 250
177 3300049573 Ga0501037_0041862 Ga0501037_0041862_1365_2177 250
178 3300049580 Ga0501046_0001850 Ga0501046_0001850_1859_2671 250
179 3300049581 Ga0501047_0048858 Ga0501047_0048858_1405_2217 250
180 3300049742 Ga0501080_0128624 Ga0501080_0128624_426_1238 250

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00290

Trp_syntA

Tryptophan synthase alpha chain

33

291

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2clk-assembly1.cif.gz_A tryptophan synthase in complex with d-glyceraldehyde 3-phosphate (g3p) 0.9321 1 245
1c29-assembly1.cif.gz_A crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2-hydroxyphenylthio)-1-butenylphosphonic acid 0.9309 2 245
5ocw-assembly1.cif.gz_A structure of mycobacterium tuberculosis tryptophan synthase in space group f222 0.9295 2 247
6c73-assembly1.cif.gz_A tryptophan synthase q114a mutant (internal aldimine state) in complex with n-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (f9f) with cesium ion bound in the metal coordination site 0.9279 1 246
1qop-assembly1.cif.gz_A-2 crystal structure of wild-type tryptophan synthase complexed with indole propanol phosphate 0.9239 1 245
ID Description Score Start End Superfamily
af_A0A1D8PMH6_3_266_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9596 3 241 3.20.20.70
1wdwE00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9228 15 242 3.20.20.70
af_A0A1D8PMH6_3_266_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9184 3 241 3.20.20.70
2ekcA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9167 1 246 3.20.20.70
5ey5A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9152 1 249 3.20.20.70
ID Description Score Start End GO Terms
AF-B1ZT49-F1-model_v4 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.9771 1 246 GO:0004834
GO:0005829
GO:0006568
AF-A0A6V8P9E4-F1-model_v4 tryptophan synthase (EC 4.2.1.20) 0.9709 2 175 GO:0004834
GO:0005829
GO:0006568
AF-A0A523Y800-F1-model_v4 tryptophan synthase (EC 4.2.1.20) 0.9661 1 229 GO:0004834
GO:0005829
GO:0006568
AF-A0A7C3RE54-F1-model_v4 tryptophan synthase (EC 4.2.1.20) 0.9654 1 212 GO:0004834
GO:0005829
GO:0006568
AF-A0A7W1TER6-F1-model_v4 tryptophan synthase (EC 4.2.1.20) 0.9647 2 174 GO:0004834
GO:0005829
GO:0006568

Feature Viewer

pLDDT pTM Quality
82.97 0.84 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map