F275235
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 180 | 105 | 360 | 105 |
Family's Representative Sequence
| Representative Sequence | 3300005539|Ga0068853_100846385|Ga0068853_1008463851 |
| Length | 118 |
| Sequence | MSKRSTKLKTGDTIVVTAGKDKGKIGKIKSVHVPQHAVRQNTLSVVVENINIVTCHEKPNPSKQTPGGRVKREAALHISNVAIYNPLTQKADKVGIKFLSDGKKIRVYRSNGEAITAS |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 2 | 3300001979 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 | Metagenome | Rhizosphere |
| 3 | 3300001989 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 | Metagenome | Rhizosphere |
| 4 | 3300003214 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL | Metagenome | Endosphere |
| 5 | 3300003574 | Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Rhizosphere |
| 6 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 8 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 9 | 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 11 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 12 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 13 | 3300009011 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG | Metagenome | Rhizosphere |
| 14 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 15 | 3300009092 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG | Metagenome | Rhizosphere |
| 16 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 17 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 18 | 3300009993 | Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG | Metagenome | Rhizosphere |
| 19 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 20 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 21 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 22 | 3300020070 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 23 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 24 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 25 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 26 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 27 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 28 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 31 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 32 | 3300031691 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA | Metagenome | Rhizosphere |
| 33 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 34 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 35 | 3300031733 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 | Metagenome | Rhizosphere |
| 36 | 3300032133 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA | Metagenome | Rhizosphere |
| 37 | 3300032139 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB | Metagenome | Rhizosphere |
| 38 | 3300032168 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 39 | 3300033524 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 40 | 3300033527 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 41 | 3300033528 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 42 | 3300033529 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 43 | 3300033541 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 44 | 3300035084 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 | Metagenome | Rhizosphere |
| 45 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 46 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 47 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 48 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 49 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 50 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 51 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 52 | 3300037588 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA | Metagenome | Rhizosphere |
| 53 | 3300038725 | Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 | Metagenome | Unclassified |
| 54 | 3300038726 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 | Metagenome | Unclassified |
| 55 | 3300038727 | Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 | Metagenome | Unclassified |
| 56 | 3300039062 | Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 | Metagenome | Unclassified |
| 57 | 3300039093 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 | Metagenome | Unclassified |
| 58 | 3300039110 | Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 | Metagenome | Unclassified |
| 59 | 3300041444 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaT | Metatranscriptome | Rhizoplane |
| 60 | 3300041446 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaT | Metatranscriptome | Rhizoplane |
| 61 | 3300042000 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 | Metagenome | Rhizosphere |
| 62 | 3300042005 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 | Metagenome | Rhizosphere |
| 63 | 3300042439 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 | Metagenome | Rhizosphere |
| 64 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 65 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 66 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 67 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 68 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 69 | 3300049127 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 70 | 3300049161 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 71 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 72 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 73 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 74 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 75 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 76 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 77 | 3300053137 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere | Metagenome | Endosphere |
| 78 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 79 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 80 | 3300059490 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 7R_CD_T1_R3 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 81 | 3300059492 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 14R_AD_T1_R2 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 82 | 3300059503 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 21R_SD_T1_R1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 83 | 3300059605 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 84 | 3300059625 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 151R_CD_T3_R2 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 85 | 3300059642 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 10R_AW_T1_R2 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 86 | 3300059647 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 87 | 3300059649 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 68R_SW_T2_R3 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 88 | 3300059652 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 72R_SD_T2_R4 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 89 | 3300060243 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 1R_CW_T1_R1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 90 | 3300060344 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 36R_AW_T1_R4 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 91 | 3300060346 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 92 | 2537561836 | Rhodanobacter spathiphylli B39 | Isolate | Unclassified |
| 93 | 2547132512 | Azospira oryzae 6a3 | Isolate | Unclassified |
| 94 | 2643221562 | Rhodanobacter sp. Root561 | Isolate | Unclassified |
| 95 | 2643221577 | Rhodanobacter sp. Root627 | Isolate | Unclassified |
| 96 | 2643221603 | Noviherbaspirillum sp. Root189 | Isolate | Unclassified |
| 97 | 2643221665 | Acinetobacter sp. Root1280 | Isolate | Unclassified |
| 98 | 2643221685 | Rhodanobacter sp. Root480 | Isolate | Unclassified |
| 99 | 2744054655 | Acinetobacter sp. BMW17 | Isolate | Unclassified |
| 100 | 2895395659 | Rhodanobacter sp. T12-5 | Isolate | Unclassified |
| 101 | 2916699645 | Acinetobacter ursingii M3 | Isolate | Unclassified |
| 102 | 2928515477 | Acinetobacter bereziniae 1375 | Isolate | Rhizosphere |
| 103 | 2939611941 | Rhodanobacter soli 1757 | Isolate | Rhizosphere |
| 104 | 2984568884 | Acinetobacter baylyi SORGH_AS893 | Isolate | Aerial Root |
| 105 | 8033232454 | Acinetobacter radioresistens SA188 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 57.78 |
| Metatranscriptomes | 34.44 |
| Isolates | 7.78 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0.56 |
| Bulb | 0 |
| Endosphere | 7.22 |
| Nodule | 0 |
| Rhizoplane | 1.11 |
| Rhizosphere | 78.89 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 1.11 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0068853_100846385 | 3300005539 | Bacteria | 877 |
| 2 | JGI24740J21852_10045121 | 3300001979 | Bacteria | 1303 |
| 3 | JGI24739J22299_10006773 | 3300001989 | Bacteria | 4313 |
| 4 | JGI25165J46597_1001532 | 3300003214 | Bacteria | 11524 |
| 5 | Ga0007410J51695_1048772 | 3300003574 | Bacteria | 4471 |
| 6 | Ga0070660_100001978 | 3300005339 | Bacteria | 14153 |
| 7 | Ga0068867_100000552 | 3300005459 | Bacteria | 24723 |
| 8 | Ga0068853_101666234 | 3300005539 | Bacteria | 618 |
| 9 | Ga0068855_100006029 | 3300005563 | Bacteria | 14785 |
| 10 | Ga0070702_101780928 | 3300005615 | Bacteria | 514 |
| 11 | Ga0068862_100232138 | 3300005844 | Bacteria | 1674 |
| 12 | Ga0075365_10006463 | 3300006038 | Bacteria | 6450 |
| 13 | Ga0075365_10387582 | 3300006038 | Bacteria | 986 |
| 14 | Ga0075364_10000068 | 3300006051 | Bacteria | 39877 |
| 15 | Ga0075364_10056142 | 3300006051 | Bacteria | 2578 |
| 16 | Ga0105251_10077560 | 3300009011 | Bacteria | 1540 |
| 17 | Ga0105244_10009211 | 3300009036 | Bacteria | 6094 |
| 18 | Ga0105250_10063409 | 3300009092 | Bacteria | 1487 |
| 19 | Ga0105241_11076851 | 3300009174 | Bacteria | 756 |
| 20 | Ga0105249_10008730 | 3300009553 | Bacteria | 8840 |
| 21 | Ga0105028_103771 | 3300009993 | Bacteria | 1583 |
| 22 | Ga0157371_10095337 | 3300013102 | Bacteria | 2109 |
| 23 | Ga0157371_10371565 | 3300013102 | Bacteria | 1043 |
| 24 | Ga0157380_11674254 | 3300014326 | Bacteria | 693 |
| 25 | Ga0157379_11704938 | 3300014968 | Bacteria | 617 |
| 26 | Ga0206356_10859005 | 3300020070 | Bacteria | 11907 |
| 27 | Ga0207655_1011850 | 3300025728 | Bacteria | 5150 |
| 28 | Ga0207647_10008577 | 3300025904 | Bacteria | 7315 |
| 29 | Ga0207681_11654981 | 3300025923 | Bacteria | 535 |
| 30 | Ga0207667_10000358 | 3300025949 | Bacteria | 61982 |
| 31 | Ga0207712_10000551 | 3300025961 | Bacteria | 30254 |
| 32 | Ga0207639_10890024 | 3300026041 | Unclassified | 832 |
| 33 | Ga0268265_10188870 | 3300028380 | Bacteria | 1777 |
| 34 | Ga0265332_10000030 | 3300031238 | Bacteria | 175141 |
| 35 | Ga0316575_10190254 | 3300031665 | Bacteria | 853 |
| 36 | Ga0316579_10038454 | 3300031691 | Bacteria | 2213 |
| 37 | Ga0316576_10002694 | 3300031727 | Bacteria | 10159 |
| 38 | Ga0316576_10014200 | 3300031727 | Bacteria | 5317 |
| 39 | Ga0316576_10027065 | 3300031727 | Bacteria | 4028 |
| 40 | Ga0316576_10058855 | 3300031727 | Bacteria | 2811 |
| 41 | Ga0316576_10760961 | 3300031727 | Bacteria | 699 |
| 42 | Ga0316578_10035854 | 3300031728 | Bacteria | 2853 |
| 43 | Ga0316578_10210531 | 3300031728 | Bacteria | 1169 |
| 44 | Ga0316578_10297343 | 3300031728 | Bacteria | 965 |
| 45 | Ga0316578_10577174 | 3300031728 | Bacteria | 659 |
| 46 | Ga0316578_10663816 | 3300031728 | Bacteria | 608 |
| 47 | Ga0316577_10305618 | 3300031733 | Bacteria | 901 |
| 48 | Ga0316577_10331218 | 3300031733 | Bacteria | 863 |
| 49 | Ga0316577_10379911 | 3300031733 | Bacteria | 802 |
| 50 | Ga0316583_10112924 | 3300032133 | Bacteria | 947 |
| 51 | Ga0316583_10163970 | 3300032133 | Bacteria | 773 |
| 52 | Ga0316580_10078997 | 3300032139 | Bacteria | 1006 |
| 53 | Ga0316580_10092325 | 3300032139 | Bacteria | 926 |
| 54 | Ga0316593_10000037 | 3300032168 | Bacteria | 14308 |
| 55 | Ga0316593_10000459 | 3300032168 | Bacteria | 7485 |
| 56 | Ga0316593_10002120 | 3300032168 | Bacteria | 4614 |
| 57 | Ga0316593_10003603 | 3300032168 | Bacteria | 3871 |
| 58 | Ga0316593_10004838 | 3300032168 | Bacteria | 3500 |
| 59 | Ga0316593_10006662 | 3300032168 | Bacteria | 3133 |
| 60 | Ga0316593_10007634 | 3300032168 | Bacteria | 2976 |
| 61 | Ga0316593_10014962 | 3300032168 | Bacteria | 2325 |
| 62 | Ga0316593_10022810 | 3300032168 | Bacteria | 1970 |
| 63 | Ga0316593_10038503 | 3300032168 | Bacteria | 1583 |
| 64 | Ga0316593_10074396 | 3300032168 | Unclassified | 1178 |
| 65 | Ga0316593_10077171 | 3300032168 | Bacteria | 1158 |
| 66 | Ga0316593_10103097 | 3300032168 | Bacteria | 1014 |
| 67 | Ga0316593_10151563 | 3300032168 | Bacteria | 843 |
| 68 | Ga0316593_10201456 | 3300032168 | Bacteria | 736 |
| 69 | Ga0316593_10204037 | 3300032168 | Bacteria | 731 |
| 70 | Ga0316593_10211115 | 3300032168 | Bacteria | 719 |
| 71 | Ga0316593_10238385 | 3300032168 | Bacteria | 678 |
| 72 | Ga0316592_1000948 | 3300033524 | Bacteria | 4447 |
| 73 | Ga0316592_1006795 | 3300033524 | Bacteria | 2215 |
| 74 | Ga0316592_1008079 | 3300033524 | Bacteria | 2068 |
| 75 | Ga0316592_1014409 | 3300033524 | Bacteria | 1640 |
| 76 | Ga0316592_1057836 | 3300033524 | Bacteria | 869 |
| 77 | Ga0316592_1065695 | 3300033524 | Bacteria | 817 |
| 78 | Ga0316592_1158684 | 3300033524 | Bacteria | 535 |
| 79 | Ga0316586_1001184 | 3300033527 | Bacteria | 2882 |
| 80 | Ga0316586_1023435 | 3300033527 | Bacteria | 1031 |
| 81 | Ga0316586_1031771 | 3300033527 | Bacteria | 907 |
| 82 | Ga0316586_1047630 | 3300033527 | Bacteria | 763 |
| 83 | Ga0316588_1000300 | 3300033528 | Bacteria | 6185 |
| 84 | Ga0316588_1003314 | 3300033528 | Bacteria | 2921 |
| 85 | Ga0316588_1046055 | 3300033528 | Bacteria | 1050 |
| 86 | Ga0316588_1080803 | 3300033528 | Bacteria | 805 |
| 87 | Ga0316587_1062007 | 3300033529 | Bacteria | 694 |
| 88 | Ga0316596_1000017 | 3300033541 | Bacteria | 15063 |
| 89 | Ga0316596_1000028 | 3300033541 | Bacteria | 14394 |
| 90 | Ga0316596_1000395 | 3300033541 | Bacteria | 7244 |
| 91 | Ga0316596_1000530 | 3300033541 | Bacteria | 6566 |
| 92 | Ga0316596_1000971 | 3300033541 | Bacteria | 5484 |
| 93 | Ga0316596_1001457 | 3300033541 | Bacteria | 4782 |
| 94 | Ga0316596_1009658 | 3300033541 | Bacteria | 2317 |
| 95 | Ga0316596_1056384 | 3300033541 | Bacteria | 1044 |
| 96 | Ga0316596_1146919 | 3300033541 | Bacteria | 647 |
| 97 | Ga0316596_1161538 | 3300033541 | Bacteria | 617 |
| 98 | Ga0373928_0130419 | 3300035084 | Bacteria | 681 |
| 99 | Ga0316574_0007928 | 3300035398 | Bacteria | 5862 |
| 100 | Ga0316574_0199847 | 3300035398 | Bacteria | 1284 |
| 101 | Ga0316574_0204879 | 3300035398 | Bacteria | 1266 |
| 102 | Ga0316574_0296821 | 3300035398 | Bacteria | 1028 |
| 103 | Ga0316574_0360131 | 3300035398 | Bacteria | 919 |
| 104 | Ga0316582_0019628 | 3300036647 | Bacteria | 3961 |
| 105 | Ga0316582_0092551 | 3300036647 | Bacteria | 1992 |
| 106 | Ga0316584_0004211 | 3300036712 | Bacteria | 9495 |
| 107 | Ga0316584_0024637 | 3300036712 | Bacteria | 4406 |
| 108 | Ga0316584_0044752 | 3300036712 | Bacteria | 3302 |
| 109 | Ga0316584_0048411 | 3300036712 | Bacteria | 3176 |
| 110 | Ga0316584_0063752 | 3300036712 | Bacteria | 2759 |
| 111 | Ga0316584_0151736 | 3300036712 | Bacteria | 1724 |
| 112 | Ga0316584_0184552 | 3300036712 | Bacteria | 1543 |
| 113 | Ga0373925_0442002 | 3300037068 | Bacteria | 1064 |
| 114 | Ga0373925_0809150 | 3300037068 | Bacteria | 773 |
| 115 | Ga0395900_0139468 | 3300037418 | Bacteria | 2483 |
| 116 | Ga0395900_0225968 | 3300037418 | Bacteria | 1884 |
| 117 | Ga0395898_0159609 | 3300037466 | Bacteria | 2156 |
| 118 | Ga0395905_0666594 | 3300037471 | Bacteria | 942 |
| 119 | Ga0395905_0855348 | 3300037471 | Bacteria | 812 |
| 120 | Ga0316581_0012590 | 3300037588 | Bacteria | 2383 |
| 121 | Ga0400484_26615 | 3300038725 | Bacteria | 15410 |
| 122 | Ga0400490_56705 | 3300038726 | Bacteria | 2139 |
| 123 | Ga0400491_23514 | 3300038727 | Bacteria | 1725 |
| 124 | Ga0400483_128671 | 3300039062 | Bacteria | 2029 |
| 125 | Ga0400483_230598 | 3300039062 | Bacteria | 1690 |
| 126 | Ga0400483_250177 | 3300039062 | Bacteria | 4161 |
| 127 | Ga0400489_78758 | 3300039093 | Bacteria | 1132 |
| 128 | Ga0400489_81426 | 3300039093 | Bacteria | 2213 |
| 129 | Ga0400487_07519 | 3300039110 | Bacteria | 4533 |
| 130 | Ga0400487_61582 | 3300039110 | Bacteria | 1418 |
| 131 | Ga0451790_31279 | 3300041444 | Bacteria | 1141 |
| 132 | Ga0451794_26555 | 3300041446 | Bacteria | 1217 |
| 133 | Ga0439437_001358 | 3300042000 | Bacteria | 2573 |
| 134 | Ga0439448_0022690 | 3300042005 | Bacteria | 1953 |
| 135 | Ga0439464_0217732 | 3300042439 | Bacteria | 612 |
| 136 | Ga0451577_0044456 | 3300042876 | Bacteria | 3976 |
| 137 | Ga0451577_0064949 | 3300042876 | Bacteria | 3254 |
| 138 | Ga0453684_0107704 | 3300044712 | Bacteria | 3393 |
| 139 | Ga0466970_0015392 | 3300044765 | Bacteria | 3932 |
| 140 | Ga0451576_0069932 | 3300045051 | Bacteria | 3653 |
| 141 | Ga0496126_0304062 | 3300048929 | Bacteria | 1315 |
| 142 | Ga0501306_013757 | 3300049127 | Bacteria | 1059 |
| 143 | Ga0501305_028120 | 3300049161 | Bacteria | 865 |
| 144 | Ga0501046_0077029 | 3300049580 | Bacteria | 2582 |
| 145 | Ga0501070_0032811 | 3300049586 | Bacteria | 4344 |
| 146 | Ga0501044_1398247 | 3300049823 | Bacteria | 565 |
| 147 | nmdc:mga00v17_134509_c1 | 3300050491 | Bacteria | 1582 |
| 148 | nmdc:mga00v17_385_c1 | 3300050491 | Bacteria | 25012 |
| 149 | nmdc:mga0yw44_2148_c2 | 3300050492 | Bacteria | 7933 |
| 150 | nmdc:mga0yw44_6972_c1 | 3300050492 | Bacteria | 5518 |
| 151 | Ga0500643_000010 | 3300053087 | Bacteria | 408084 |
| 152 | Ga0500561_0000001 | 3300053137 | Bacteria | 957685 |
| 153 | Ga0500568_0011040 | 3300053139 | Bacteria | 4207 |
| 154 | Ga0500622_0071747 | 3300053156 | Bacteria | 1750 |
| 155 | Ga0587066_117794 | 3300059490 | Bacteria | 624 |
| 156 | Ga0587073_0239959 | 3300059492 | Bacteria | 563 |
| 157 | Ga0587080_057159 | 3300059503 | Bacteria | 751 |
| 158 | Ga0587106_003388 | 3300059605 | Bacteria | 1666 |
| 159 | Ga0587113_025245 | 3300059625 | Bacteria | 649 |
| 160 | Ga0587069_028825 | 3300059642 | Bacteria | 884 |
| 161 | Ga0587079_052807 | 3300059647 | Bacteria | 858 |
| 162 | Ga0587102_001600 | 3300059649 | Bacteria | 1622 |
| 163 | Ga0587107_001692 | 3300059652 | Bacteria | 1847 |
| 164 | Ga0587060_036642 | 3300060243 | Bacteria | 514 |
| 165 | Ga0587071_169313 | 3300060344 | Bacteria | 554 |
| 166 | Ga0587111_0029680 | 3300060346 | Bacteria | 1109 |
| 167 | 2538834121 | 2537561836 | Bacteria | 3910579 |
| 168 | 2548846594 | 2547132512 | Bacteria | 3416496 |
| 169 | 2643829535 | 2643221562 | Bacteria | 4048635 |
| 170 | 2643895210 | 2643221577 | Bacteria | 3710843 |
| 171 | 2644026935 | 2643221603 | Bacteria | 6147767 |
| 172 | 2644361948 | 2643221665 | Bacteria | 4699229 |
| 173 | 2644477369 | 2643221685 | Bacteria | 3673288 |
| 174 | 2745159949 | 2744054655 | Bacteria | 3552603 |
| 175 | 2895397485 | 2895395659 | Bacteria | 3983269 |
| 176 | 2916700224 | 2916699645 | Bacteria | 3568996 |
| 177 | 2928517467 | 2928515477 | Bacteria | 4448421 |
| 178 | 2939612722 | 2939611941 | Bacteria | 3892017 |
| 179 | 2984571903 | 2984568884 | Bacteria | 3884413 |
| 180 | 8033234123 | 8033232454 | Bacteria | 3202805 |
| 181 | Ga0068853_100846385 | |||
| 182 | JGI24740J21852_10045121 | |||
| 183 | JGI24739J22299_10006773 | |||
| 184 | JGI25165J46597_1001532 | |||
| 185 | Ga0007410J51695_1048772 | |||
| 186 | Ga0070660_100001978 | |||
| 187 | Ga0068867_100000552 | |||
| 188 | Ga0068853_101666234 | |||
| 189 | Ga0068855_100006029 | |||
| 190 | Ga0070702_101780928 | |||
| 191 | Ga0068862_100232138 | |||
| 192 | Ga0075365_10006463 | |||
| 193 | Ga0075365_10387582 | |||
| 194 | Ga0075364_10000068 | |||
| 195 | Ga0075364_10056142 | |||
| 196 | Ga0105251_10077560 | |||
| 197 | Ga0105244_10009211 | |||
| 198 | Ga0105250_10063409 | |||
| 199 | Ga0105241_11076851 | |||
| 200 | Ga0105249_10008730 | |||
| 201 | Ga0105028_103771 | |||
| 202 | Ga0157371_10095337 | |||
| 203 | Ga0157371_10371565 | |||
| 204 | Ga0157380_11674254 | |||
| 205 | Ga0157379_11704938 | |||
| 206 | Ga0206356_10859005 | |||
| 207 | Ga0207655_1011850 | |||
| 208 | Ga0207647_10008577 | |||
| 209 | Ga0207681_11654981 | |||
| 210 | Ga0207667_10000358 | |||
| 211 | Ga0207712_10000551 | |||
| 212 | Ga0207639_10890024 | |||
| 213 | Ga0268265_10188870 | |||
| 214 | Ga0265332_10000030 | |||
| 215 | Ga0316575_10190254 | |||
| 216 | Ga0316579_10038454 | |||
| 217 | Ga0316576_10002694 | |||
| 218 | Ga0316576_10014200 | |||
| 219 | Ga0316576_10027065 | |||
| 220 | Ga0316576_10058855 | |||
| 221 | Ga0316576_10760961 | |||
| 222 | Ga0316578_10035854 | |||
| 223 | Ga0316578_10210531 | |||
| 224 | Ga0316578_10297343 | |||
| 225 | Ga0316578_10577174 | |||
| 226 | Ga0316578_10663816 | |||
| 227 | Ga0316577_10305618 | |||
| 228 | Ga0316577_10331218 | |||
| 229 | Ga0316577_10379911 | |||
| 230 | Ga0316583_10112924 | |||
| 231 | Ga0316583_10163970 | |||
| 232 | Ga0316580_10078997 | |||
| 233 | Ga0316580_10092325 | |||
| 234 | Ga0316593_10000037 | |||
| 235 | Ga0316593_10000459 | |||
| 236 | Ga0316593_10002120 | |||
| 237 | Ga0316593_10003603 | |||
| 238 | Ga0316593_10004838 | |||
| 239 | Ga0316593_10006662 | |||
| 240 | Ga0316593_10007634 | |||
| 241 | Ga0316593_10014962 | |||
| 242 | Ga0316593_10022810 | |||
| 243 | Ga0316593_10038503 | |||
| 244 | Ga0316593_10074396 | |||
| 245 | Ga0316593_10077171 | |||
| 246 | Ga0316593_10103097 | |||
| 247 | Ga0316593_10151563 | |||
| 248 | Ga0316593_10201456 | |||
| 249 | Ga0316593_10204037 | |||
| 250 | Ga0316593_10211115 | |||
| 251 | Ga0316593_10238385 | |||
| 252 | Ga0316592_1000948 | |||
| 253 | Ga0316592_1006795 | |||
| 254 | Ga0316592_1008079 | |||
| 255 | Ga0316592_1014409 | |||
| 256 | Ga0316592_1057836 | |||
| 257 | Ga0316592_1065695 | |||
| 258 | Ga0316592_1158684 | |||
| 259 | Ga0316586_1001184 | |||
| 260 | Ga0316586_1023435 | |||
| 261 | Ga0316586_1031771 | |||
| 262 | Ga0316586_1047630 | |||
| 263 | Ga0316588_1000300 | |||
| 264 | Ga0316588_1003314 | |||
| 265 | Ga0316588_1046055 | |||
| 266 | Ga0316588_1080803 | |||
| 267 | Ga0316587_1062007 | |||
| 268 | Ga0316596_1000017 | |||
| 269 | Ga0316596_1000028 | |||
| 270 | Ga0316596_1000395 | |||
| 271 | Ga0316596_1000530 | |||
| 272 | Ga0316596_1000971 | |||
| 273 | Ga0316596_1001457 | |||
| 274 | Ga0316596_1009658 | |||
| 275 | Ga0316596_1056384 | |||
| 276 | Ga0316596_1146919 | |||
| 277 | Ga0316596_1161538 | |||
| 278 | Ga0373928_0130419 | |||
| 279 | Ga0316574_0007928 | |||
| 280 | Ga0316574_0199847 | |||
| 281 | Ga0316574_0204879 | |||
| 282 | Ga0316574_0296821 | |||
| 283 | Ga0316574_0360131 | |||
| 284 | Ga0316582_0019628 | |||
| 285 | Ga0316582_0092551 | |||
| 286 | Ga0316584_0004211 | |||
| 287 | Ga0316584_0024637 | |||
| 288 | Ga0316584_0044752 | |||
| 289 | Ga0316584_0048411 | |||
| 290 | Ga0316584_0063752 | |||
| 291 | Ga0316584_0151736 | |||
| 292 | Ga0316584_0184552 | |||
| 293 | Ga0373925_0442002 | |||
| 294 | Ga0373925_0809150 | |||
| 295 | Ga0395900_0139468 | |||
| 296 | Ga0395900_0225968 | |||
| 297 | Ga0395898_0159609 | |||
| 298 | Ga0395905_0666594 | |||
| 299 | Ga0395905_0855348 | |||
| 300 | Ga0316581_0012590 | |||
| 301 | Ga0400484_26615 | |||
| 302 | Ga0400490_56705 | |||
| 303 | Ga0400491_23514 | |||
| 304 | Ga0400483_128671 | |||
| 305 | Ga0400483_230598 | |||
| 306 | Ga0400483_250177 | |||
| 307 | Ga0400489_78758 | |||
| 308 | Ga0400489_81426 | |||
| 309 | Ga0400487_07519 | |||
| 310 | Ga0400487_61582 | |||
| 311 | Ga0451790_31279 | |||
| 312 | Ga0451794_26555 | |||
| 313 | Ga0439437_001358 | |||
| 314 | Ga0439448_0022690 | |||
| 315 | Ga0439464_0217732 | |||
| 316 | Ga0451577_0044456 | |||
| 317 | Ga0451577_0064949 | |||
| 318 | Ga0453684_0107704 | |||
| 319 | Ga0466970_0015392 | |||
| 320 | Ga0451576_0069932 | |||
| 321 | Ga0496126_0304062 | |||
| 322 | Ga0501306_013757 | |||
| 323 | Ga0501305_028120 | |||
| 324 | Ga0501046_0077029 | |||
| 325 | Ga0501070_0032811 | |||
| 326 | Ga0501044_1398247 | |||
| 327 | nmdc:mga00v17_134509_c1 | |||
| 328 | nmdc:mga00v17_385_c1 | |||
| 329 | nmdc:mga0yw44_2148_c2 | |||
| 330 | nmdc:mga0yw44_6972_c1 | |||
| 331 | Ga0500643_000010 | |||
| 332 | Ga0500561_0000001 | |||
| 333 | Ga0500568_0011040 | |||
| 334 | Ga0500622_0071747 | |||
| 335 | Ga0587066_117794 | |||
| 336 | Ga0587073_0239959 | |||
| 337 | Ga0587080_057159 | |||
| 338 | Ga0587106_003388 | |||
| 339 | Ga0587113_025245 | |||
| 340 | Ga0587069_028825 | |||
| 341 | Ga0587079_052807 | |||
| 342 | Ga0587102_001600 | |||
| 343 | Ga0587107_001692 | |||
| 344 | Ga0587060_036642 | |||
| 345 | Ga0587071_169313 | |||
| 346 | Ga0587111_0029680 | |||
| 347 | 2538834121 | |||
| 348 | 2548846594 | |||
| 349 | 2643829535 | |||
| 350 | 2643895210 | |||
| 351 | 2644026935 | |||
| 352 | 2644361948 | |||
| 353 | 2644477369 | |||
| 354 | 2745159949 | |||
| 355 | 2895397485 | |||
| 356 | 2916700224 | |||
| 357 | 2928517467 | |||
| 358 | 2939612722 | |||
| 359 | 2984571903 | |||
| 360 | 8033234123 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 8cgk-assembly1.cif.gz_t | lincomycin and avilamycin bound to the 50s subunit | 0.9666 | 1 | 102 |
| 8cgv-assembly1.cif.gz_t | tiamulin bound to the 50s subunit | 0.9664 | 1 | 102 |
| 8cam-assembly1.cif.gz_t | evernimicin bound to the 50s subunit | 0.9638 | 1 | 102 |
| 8cgv-assembly1.cif.gz_t | tiamulin bound to the 50s subunit | 0.9566 | 1 | 102 |
| 8cgk-assembly1.cif.gz_t | lincomycin and avilamycin bound to the 50s subunit | 0.9565 | 1 | 102 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q69T55_240_282_2.30.30.30 | Mainly Beta;Roll;SH3 type barrels.; | 0.9362 | 4 | 34 | 2.30.30.30 |
| af_P9WHB7_1_104_2.30.30.30 | Mainly Beta;Roll;SH3 type barrels.; | 0.9046 | 3 | 100 | 2.30.30.30 |
| af_C6KSP8_36_136_2.30.30.30 | Mainly Beta;Roll;SH3 type barrels.; | 0.9021 | 1 | 99 | 2.30.30.30 |
| af_C6SX56_4_111_2.30.30.30 | Mainly Beta;Roll;SH3 type barrels.; | 0.902 | 3 | 99 | 2.30.30.30 |
| af_Q55DJ4_14_116_2.30.30.30 | Mainly Beta;Roll;SH3 type barrels.; | 0.8917 | 4 | 100 | 2.30.30.30 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A1G0HZ47-F1-model_v4 | Large ribosomal subunit protein uL24 | 0.9853 | 1 | 104 |
GO:0003735
GO:0005840 GO:0006412 GO:0019843 GO:1990904 |
| AF-A0A126NL65-F1-model_v4 | Large ribosomal subunit protein uL24 | 0.9846 | 1 | 104 |
GO:0003735
GO:0005840 GO:0006412 GO:0019843 GO:1990904 |
| AF-A0A352Q4Q8-F1-model_v4 | Large ribosomal subunit protein uL24 (50S ribosomal protein L24) | 0.9846 | 1 | 81 |
GO:0003723
GO:0003735 GO:0005840 GO:0006412 GO:1990904 |
| AF-A0A1I6Z7R7-F1-model_v4 | Large ribosomal subunit protein uL24 | 0.9814 | 1 | 104 |
GO:0003735
GO:0005840 GO:0006412 GO:0019843 GO:1990904 |
| AF-A0A4R7NF21-F1-model_v4 | Large ribosomal subunit protein uL24 | 0.9805 | 1 | 104 |
GO:0003735
GO:0005840 GO:0006412 GO:0019843 GO:1990904 |