F274634

General Info

Members Datasets Scaffolds Average Seq Length
179 108 358 313

Family's Representative Sequence

Representative Sequence 3300053153|Ga0500616_0000016|Ga0500616_0000016_184252_185253
Length 333
Sequence MTSPQPTPLANVPRWLEPSIASLRAARAADRLPHALMIHDTVGGGGDWLAEWVASLAMCLVPNDAPCGKCVGCKRVASNQHPDLVRMHPIEESKQLRIEQVRELAQELSLTSHQGGYKVGIVSPADSMNRFAANALLKTLEEPSGRALLILVATQPSRLPATIMSRCQKLKVRAPSRAESIEWLEATRGAGDWAGVLDVIGDAPFIAADADPKAIPALGSETRRALEEIEAGAADPVATAERWHRSETGLRLKCFENWLTDRIRHQFGAGSSDEIRSAAPLPRGLSIMNIRGLIELAESVRDLRSSLDVPLNRSLALELLFRRLAGQRQASRG

Samples

Sample ID Description Type Environment
1 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
2 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
19 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
34 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
37 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
66 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
67 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
68 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
69 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
70 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
71 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
72 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
75 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
76 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
77 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
78 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
79 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
80 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
81 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
82 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
83 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
84 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
85 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
86 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
87 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
88 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
89 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
90 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
91 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
92 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
93 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
94 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
95 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
99 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
100 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
101 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
102 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
103 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
104 3300053124 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 endosphere Metagenome Endosphere
105 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
106 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
107 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
108 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.26
Nodule 0
Rhizoplane 2.79
Rhizosphere 77.65
Stem 0
Stem Tuber 0
Unclassified 2.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500616_0000016 3300053153 Bacteria 627087
2 JGI24744J21845_10022968 3300002077 Bacteria 1221
3 JGI25406J46586_10007193 3300003203 Bacteria 5095
4 rootH1_10316092 3300003323 Bacteria 1487
5 Ga0065707_10081857 3300005295 Bacteria 33542
6 Ga0070683_100040971 3300005329 Bacteria 4259
7 Ga0070670_100079269 3300005331 Bacteria 2822
8 Ga0070680_100019233 3300005336 Bacteria 5411
9 Ga0070680_100051882 3300005336 Bacteria 3348
10 Ga0070671_100032940 3300005355 Bacteria 4283
11 Ga0070671_100107986 3300005355 Bacteria 2337
12 Ga0070667_100000028 3300005367 Bacteria 180376
13 Ga0070667_100009202 3300005367 Bacteria 8178
14 Ga0070681_10009728 3300005458 Bacteria 9461
15 Ga0070681_10034425 3300005458 Bacteria 5086
16 Ga0070681_10198646 3300005458 Unclassified 1924
17 Ga0070679_100009271 3300005530 Bacteria 9304
18 Ga0070679_100033123 3300005530 Bacteria 5115
19 Ga0070679_100193019 3300005530 Unclassified 2005
20 Ga0070684_100008245 3300005535 Bacteria 8143
21 Ga0070684_100401204 3300005535 Bacteria 1264
22 Ga0070665_100003961 3300005548 Bacteria 15621
23 Ga0070665_100010204 3300005548 Bacteria 9501
24 Ga0070665_100030879 3300005548 Bacteria 5392
25 Ga0070665_100047866 3300005548 Bacteria 4292
26 Ga0070665_100612897 3300005548 Bacteria 1101
27 Ga0068855_100003255 3300005563 Bacteria 19864
28 Ga0068855_100273792 3300005563 Bacteria 1877
29 Ga0068856_100598196 3300005614 Unclassified 1124
30 Ga0068859_100005119 3300005617 Bacteria 13320
31 Ga0068859_100497987 3300005617 Bacteria 1314
32 Ga0068864_100261191 3300005618 Bacteria 1611
33 Ga0068861_100166506 3300005719 Bacteria 1823
34 Ga0068863_100014766 3300005841 Bacteria 7512
35 Ga0068863_100143855 3300005841 Bacteria 2280
36 Ga0068858_100001018 3300005842 Bacteria 28907
37 Ga0068858_100069510 3300005842 Bacteria 3264
38 Ga0068860_100022648 3300005843 Bacteria 6073
39 Ga0068862_100193133 3300005844 Bacteria 1833
40 Ga0068862_100257091 3300005844 Bacteria 1593
41 Ga0068862_100514407 3300005844 Bacteria 1138
42 Ga0081455_10000016 3300005937 Bacteria 176679
43 Ga0081539_10000060 3300005985 Bacteria 252799
44 Ga0070716_100143274 3300006173 Bacteria 1527
45 Ga0068871_100336062 3300006358 Bacteria 1333
46 Ga0097620_100005119 3300006931 Bacteria 13320
47 Ga0097620_100497959 3300006931 Bacteria 1314
48 Ga0105240_10005488 3300009093 Bacteria 18904
49 Ga0105240_10020825 3300009093 Bacteria 8734
50 Ga0105240_10032583 3300009093 Bacteria 6746
51 Ga0105240_10076966 3300009093 Bacteria 4111
52 Ga0105240_10111900 3300009093 Bacteria 3302
53 Ga0105240_10115494 3300009093 Bacteria 3241
54 Ga0105240_10141861 3300009093 Bacteria 2871
55 Ga0105240_10276781 3300009093 Bacteria 1930
56 Ga0105247_10000213 3300009101 Bacteria 56245
57 Ga0105247_10009778 3300009101 Bacteria 5811
58 Ga0105247_10016474 3300009101 Bacteria 4431
59 Ga0105237_10012678 3300009545 Bacteria 8872
60 Ga0105237_10031190 3300009545 Bacteria 5406
61 Ga0105237_10087402 3300009545 Bacteria 3107
62 Ga0105237_10188422 3300009545 Bacteria 2063
63 Ga0105238_10066751 3300009551 Bacteria 3598
64 Ga0105238_10072029 3300009551 Bacteria 3453
65 Ga0105238_10127802 3300009551 Bacteria 2520
66 Ga0105249_10196904 3300009553 Bacteria 1970
67 Ga0157370_10044937 3300013104 Bacteria 4241
68 Ga0157369_10001598 3300013105 Bacteria 27722
69 Ga0157369_10220862 3300013105 Bacteria 1984
70 Ga0157374_10125201 3300013296 Bacteria 2484
71 Ga0163162_10063517 3300013306 Bacteria 3735
72 Ga0163162_10111024 3300013306 Bacteria 2839
73 Ga0157372_10096899 3300013307 Bacteria 3363
74 Ga0157372_10406612 3300013307 Bacteria 1586
75 Ga0163163_10099990 3300014325 Bacteria 2922
76 Ga0163163_10146754 3300014325 Bacteria 2403
77 Ga0163163_10531487 3300014325 Bacteria 1238
78 Ga0157379_10003897 3300014968 Bacteria 12721
79 Ga0157379_10016200 3300014968 Bacteria 6558
80 Ga0157379_10150429 3300014968 Bacteria 2099
81 Ga0157379_10237265 3300014968 Bacteria 1654
82 Ga0207710_10000230 3300025900 Bacteria 48621
83 Ga0207710_10004217 3300025900 Bacteria 6299
84 Ga0207680_10267605 3300025903 Bacteria 1185
85 Ga0207699_10063220 3300025906 Bacteria 2235
86 Ga0207707_10000054 3300025912 Bacteria 115337
87 Ga0207707_10024863 3300025912 Bacteria 5238
88 Ga0207707_10136666 3300025912 Bacteria 2143
89 Ga0207707_10155046 3300025912 Bacteria 2003
90 Ga0207695_10019024 3300025913 Bacteria 7921
91 Ga0207695_10081377 3300025913 Bacteria 3277
92 Ga0207671_10020358 3300025914 Bacteria 5051
93 Ga0207660_10025754 3300025917 Bacteria 3996
94 Ga0207660_10134617 3300025917 Unclassified 1884
95 Ga0207652_10009679 3300025921 Bacteria 7754
96 Ga0207652_10038999 3300025921 Bacteria 4029
97 Ga0207652_10054799 3300025921 Bacteria 3429
98 Ga0207652_10110686 3300025921 Bacteria 2435
99 Ga0207650_10096344 3300025925 Bacteria 2269
100 Ga0207644_10001842 3300025931 Bacteria 13788
101 Ga0207711_10093944 3300025941 Bacteria 2642
102 Ga0207679_10201451 3300025945 Bacteria 1663
103 Ga0207667_10018518 3300025949 Bacteria 7808
104 Ga0207712_10089137 3300025961 Bacteria 2267
105 Ga0207712_10201829 3300025961 Bacteria 1577
106 Ga0207658_10000054 3300025986 Bacteria 125062
107 Ga0207658_10009424 3300025986 Bacteria 6621
108 Ga0207703_10000931 3300026035 Bacteria 28414
109 Ga0207703_10001837 3300026035 Bacteria 18926
110 Ga0207678_10028434 3300026067 Bacteria 4881
111 Ga0207702_10294239 3300026078 Bacteria 1539
112 Ga0207641_10003312 3300026088 Bacteria 14330
113 Ga0207641_10006213 3300026088 Bacteria 10103
114 Ga0207674_10391472 3300026116 Bacteria 1343
115 Ga0268266_10001083 3300028379 Bacteria 34130
116 Ga0268266_10004802 3300028379 Bacteria 12832
117 Ga0268266_10043538 3300028379 Bacteria 3837
118 Ga0268266_10130390 3300028379 Bacteria 2248
119 Ga0268264_10000179 3300028381 Bacteria 134401
120 Ga0268264_10066073 3300028381 Bacteria 3049
121 Ga0307515_10017856 3300028794 Bacteria 12892
122 Ga0307515_10135306 3300028794 Bacteria 2684
123 Ga0265338_10008224 3300028800 Bacteria 12704
124 Ga0307511_10002006 3300030521 Bacteria 21360
125 Ga0265339_10078485 3300031249 Bacteria 1748
126 Ga0307509_10254271 3300031507 Bacteria 1538
127 Ga0307510_10000013 3300033180 Bacteria 274569
128 Ga0307510_10094003 3300033180 Bacteria 2826
129 Ga0373936_0008836 3300035113 Bacteria 3796
130 Ga0373933_0213694 3300035724 Bacteria 1236
131 Ga0373937_0022116 3300036401 Bacteria 5713
132 Ga0436364_1009554 3300037853 Bacteria 2368
133 Ga0436365_1652428 3300039437 Bacteria 3233
134 Ga0436360_1265545 3300039438 Bacteria 2220
135 Ga0436363_0071379 3300039450 Bacteria 2041
136 Ga0436363_0536754 3300039450 Bacteria 4797
137 Ga0466969_0053786 3300044656 Bacteria 1974
138 Ga0466966_0012289 3300044684 Bacteria 5673
139 Ga0466961_0029430 3300044693 Bacteria 3530
140 Ga0466961_0034267 3300044693 Bacteria 3260
141 Ga0466964_0002847 3300044706 Bacteria 6238
142 Ga0466970_0007990 3300044765 Bacteria 5313
143 Ga0466957_0139409 3300044842 Bacteria 1561
144 Ga0466959_0024900 3300045049 Bacteria 4432
145 Ga0466959_0125719 3300045049 Bacteria 1820
146 Ga0466958_0063854 3300045836 Bacteria 2246
147 Ga0495583_0032133 3300046506 Bacteria 2536
148 Ga0495632_0075651 3300046519 Bacteria 1611
149 Ga0495587_0125282 3300046536 Bacteria 1470
150 Ga0495687_089706 3300047443 Bacteria 1180
151 Ga0496102_0076543 3300048905 Bacteria 3078
152 Ga0496106_0154803 3300048909 Bacteria 1809
153 Ga0496112_0007531 3300048915 Bacteria 9666
154 Ga0496115_0209283 3300048918 Bacteria 1611
155 Ga0496115_0340526 3300048918 Bacteria 1224
156 Ga0496117_0000057 3300048920 Bacteria 268246
157 Ga0496118_0000028 3300048921 Bacteria 366490
158 Ga0496120_0009450 3300048923 Bacteria 6912
159 Ga0496121_0001295 3300048924 Bacteria 43040
160 Ga0496121_0021515 3300048924 Bacteria 6312
161 Ga0496124_0067507 3300048927 Bacteria 2975
162 Ga0496125_0011721 3300048928 Bacteria 8738
163 Ga0496125_0048567 3300048928 Bacteria 3537
164 Ga0496126_0017753 3300048929 Bacteria 7082
165 Ga0496126_0242685 3300048929 Bacteria 1504
166 Ga0496126_0356876 3300048929 Bacteria 1194
167 Ga0501044_0613733 3300049823 Bacteria 980
168 Ga0500644_0051596 3300053088 Bacteria 1413
169 Ga0500646_0020271 3300053090 Bacteria 1766
170 Ga0500646_0047695 3300053090 Bacteria 1226
171 Ga0500583_0004120 3300053092 Bacteria 4689
172 Ga0500595_023983 3300053119 Bacteria 2136
173 Ga0500617_044145 3300053124 Bacteria 1993
174 Ga0500568_0048505 3300053139 Bacteria 1679
175 Ga0500616_0010072 3300053153 Bacteria 5679
176 Ga0500639_038711 3300053163 Bacteria 2511
177 Ga0500636_0129019 3300053177 Bacteria 1411
178 Ga0500637_0008597 3300053178 Bacteria 5159
179 Ga0500637_0035099 3300053178 Bacteria 2809
180 Ga0500616_0000016
181 JGI24744J21845_10022968
182 JGI25406J46586_10007193
183 rootH1_10316092
184 Ga0065707_10081857
185 Ga0070683_100040971
186 Ga0070670_100079269
187 Ga0070680_100019233
188 Ga0070680_100051882
189 Ga0070671_100032940
190 Ga0070671_100107986
191 Ga0070667_100000028
192 Ga0070667_100009202
193 Ga0070681_10009728
194 Ga0070681_10034425
195 Ga0070681_10198646
196 Ga0070679_100009271
197 Ga0070679_100033123
198 Ga0070679_100193019
199 Ga0070684_100008245
200 Ga0070684_100401204
201 Ga0070665_100003961
202 Ga0070665_100010204
203 Ga0070665_100030879
204 Ga0070665_100047866
205 Ga0070665_100612897
206 Ga0068855_100003255
207 Ga0068855_100273792
208 Ga0068856_100598196
209 Ga0068859_100005119
210 Ga0068859_100497987
211 Ga0068864_100261191
212 Ga0068861_100166506
213 Ga0068863_100014766
214 Ga0068863_100143855
215 Ga0068858_100001018
216 Ga0068858_100069510
217 Ga0068860_100022648
218 Ga0068862_100193133
219 Ga0068862_100257091
220 Ga0068862_100514407
221 Ga0081455_10000016
222 Ga0081539_10000060
223 Ga0070716_100143274
224 Ga0068871_100336062
225 Ga0097620_100005119
226 Ga0097620_100497959
227 Ga0105240_10005488
228 Ga0105240_10020825
229 Ga0105240_10032583
230 Ga0105240_10076966
231 Ga0105240_10111900
232 Ga0105240_10115494
233 Ga0105240_10141861
234 Ga0105240_10276781
235 Ga0105247_10000213
236 Ga0105247_10009778
237 Ga0105247_10016474
238 Ga0105237_10012678
239 Ga0105237_10031190
240 Ga0105237_10087402
241 Ga0105237_10188422
242 Ga0105238_10066751
243 Ga0105238_10072029
244 Ga0105238_10127802
245 Ga0105249_10196904
246 Ga0157370_10044937
247 Ga0157369_10001598
248 Ga0157369_10220862
249 Ga0157374_10125201
250 Ga0163162_10063517
251 Ga0163162_10111024
252 Ga0157372_10096899
253 Ga0157372_10406612
254 Ga0163163_10099990
255 Ga0163163_10146754
256 Ga0163163_10531487
257 Ga0157379_10003897
258 Ga0157379_10016200
259 Ga0157379_10150429
260 Ga0157379_10237265
261 Ga0207710_10000230
262 Ga0207710_10004217
263 Ga0207680_10267605
264 Ga0207699_10063220
265 Ga0207707_10000054
266 Ga0207707_10024863
267 Ga0207707_10136666
268 Ga0207707_10155046
269 Ga0207695_10019024
270 Ga0207695_10081377
271 Ga0207671_10020358
272 Ga0207660_10025754
273 Ga0207660_10134617
274 Ga0207652_10009679
275 Ga0207652_10038999
276 Ga0207652_10054799
277 Ga0207652_10110686
278 Ga0207650_10096344
279 Ga0207644_10001842
280 Ga0207711_10093944
281 Ga0207679_10201451
282 Ga0207667_10018518
283 Ga0207712_10089137
284 Ga0207712_10201829
285 Ga0207658_10000054
286 Ga0207658_10009424
287 Ga0207703_10000931
288 Ga0207703_10001837
289 Ga0207678_10028434
290 Ga0207702_10294239
291 Ga0207641_10003312
292 Ga0207641_10006213
293 Ga0207674_10391472
294 Ga0268266_10001083
295 Ga0268266_10004802
296 Ga0268266_10043538
297 Ga0268266_10130390
298 Ga0268264_10000179
299 Ga0268264_10066073
300 Ga0307515_10017856
301 Ga0307515_10135306
302 Ga0265338_10008224
303 Ga0307511_10002006
304 Ga0265339_10078485
305 Ga0307509_10254271
306 Ga0307510_10000013
307 Ga0307510_10094003
308 Ga0373936_0008836
309 Ga0373933_0213694
310 Ga0373937_0022116
311 Ga0436364_1009554
312 Ga0436365_1652428
313 Ga0436360_1265545
314 Ga0436363_0071379
315 Ga0436363_0536754
316 Ga0466969_0053786
317 Ga0466966_0012289
318 Ga0466961_0029430
319 Ga0466961_0034267
320 Ga0466964_0002847
321 Ga0466970_0007990
322 Ga0466957_0139409
323 Ga0466959_0024900
324 Ga0466959_0125719
325 Ga0466958_0063854
326 Ga0495583_0032133
327 Ga0495632_0075651
328 Ga0495587_0125282
329 Ga0495687_089706
330 Ga0496102_0076543
331 Ga0496106_0154803
332 Ga0496112_0007531
333 Ga0496115_0209283
334 Ga0496115_0340526
335 Ga0496117_0000057
336 Ga0496118_0000028
337 Ga0496120_0009450
338 Ga0496121_0001295
339 Ga0496121_0021515
340 Ga0496124_0067507
341 Ga0496125_0011721
342 Ga0496125_0048567
343 Ga0496126_0017753
344 Ga0496126_0242685
345 Ga0496126_0356876
346 Ga0501044_0613733
347 Ga0500644_0051596
348 Ga0500646_0020271
349 Ga0500646_0047695
350 Ga0500583_0004120
351 Ga0500595_023983
352 Ga0500617_044145
353 Ga0500568_0048505
354 Ga0500616_0010072
355 Ga0500639_038711
356 Ga0500636_0129019
357 Ga0500637_0008597
358 Ga0500637_0035099

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13177

DNA_pol3_delta2

DNA polymerase III, delta subunit

16

176

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1njf-assembly4.cif.gz_D nucleotide bound form of an isolated e. coli clamp loader gamma subunit 0.7175 7 204
3glh-assembly3.cif.gz_O crystal structure of the e. coli clamp loader bound to psi peptide 0.7129 1 311
3glh-assembly3.cif.gz_O crystal structure of the e. coli clamp loader bound to psi peptide 0.707 1 311
3glf-assembly1.cif.gz_E crystal structure of the ecoli clamp loader bound to primer-template dna 0.6983 1 311
3glf-assembly1.cif.gz_E crystal structure of the ecoli clamp loader bound to primer-template dna 0.6926 1 311
ID Description Score Start End Superfamily
1xxhJ01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8508 1 154 3.40.50.300
af_O06363_3_179_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8404 1 151 3.40.50.300
af_F4JRP8_232_412_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8331 3 152 3.40.50.300
3gliB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8166 7 154 3.40.50.300
af_O64728_443_623_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8046 3 152 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A7C3GQA0-F1-model_v4 DNA polymerase III subunit delta 0.9305 7 137 GO:0006261
GO:0016740
AF-A0A2R7RP75-F1-model_v4 deleted 0.9281 1 126
AF-A0A7X6ZGG2-F1-model_v4 DNA polymerase III subunit delta 0.9279 6 119
AF-A0A3D0VVD6-F1-model_v4 ATP-binding protein 0.9273 7 126 GO:0005524
GO:0006261
GO:0016740
AF-A0A354Q9F4-F1-model_v4 DNA polymerase III subunit delta 0.9258 3 128 GO:0006261
GO:0016740

Map