F273648

General Info

Members Datasets Scaffolds Average Seq Length
179 122 358 428

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100036290|Ga0075431_1000362905
Length 473
Sequence VESHPHIVLPFDSPGVACENAPIPGLPEGRLDRLCGVSFRRALGPFDATMVVIGGIIGSGIFINPYIVAQRLDSTLLVLAAWAAGGLIALAGAFAYAELGATFPKAGGQYVYLRDGWHPLVGFLYGWALLLLIESGAIAAVAITFAGYALRLAGRPDVAPVPLAIAAIVVLSIVNYVGVKPGSRVLNVLVVLKVAALAILIGAGALAPEAEGWWTAARPGGSGGSLVAFGAALVPILFAYGGWQNANYIAEEIENPRRHLPFSLIAGTLSVVAIYVAANVVYLRALGLDGLAGTTTPASTAAGIMFGPLGDRFVTAAIAISTFGFLDLAILAPTRVYYAMAADRVFFPALARLHPRYQTPWVAIAIQSTWSCVLALTGRYEQLLNYVVFADWIFFGLTVATVIVFRRTHPLPSRPAGTFRSPGYPIVEGAFVIVAAAVVLSVVRADPSSALRGALLLAAGIPVFFGFRRRSDL

Samples

Sample ID Description Type Environment
1 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
20 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
25 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
36 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
50 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
72 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
76 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
77 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
78 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
79 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
80 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
81 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
82 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
83 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
84 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
85 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
86 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
87 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
88 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
89 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
90 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
91 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
92 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
93 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
94 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
95 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
96 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
97 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
98 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
99 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
100 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
106 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
107 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
108 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
109 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
110 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
111 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
112 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
113 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
116 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
117 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
118 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
119 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
120 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
121 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
122 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.79
Nodule 0
Rhizoplane 5.03
Rhizosphere 91.62
Stem 0
Stem Tuber 0
Unclassified 10.06

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075431_100036290 3300006847 Bacteria 5077
2 Ga0065715_10002370 3300005293 Bacteria 5719
3 Ga0070676_10010617 3300005328 Bacteria 4998
4 Ga0070683_100002078 3300005329 Bacteria 15813
5 Ga0070690_100051337 3300005330 Bacteria 2632
6 Ga0070670_100004023 3300005331 Bacteria 12273
7 Ga0070670_100055698 3300005331 Bacteria 3393
8 Ga0070670_100075513 3300005331 Bacteria 2896
9 Ga0070670_100088931 3300005331 Bacteria 2655
10 Ga0070670_100224550 3300005331 Bacteria 1634
11 Ga0070689_100032374 3300005340 Bacteria 3976
12 Ga0070687_100012360 3300005343 Bacteria 3769
13 Ga0070661_100020213 3300005344 Bacteria 4746
14 Ga0070668_100201033 3300005347 Unclassified 1636
15 Ga0070675_100163197 3300005354 Bacteria 1917
16 Ga0070671_100008622 3300005355 Bacteria 8176
17 Ga0070674_100055285 3300005356 Bacteria 2748
18 Ga0070674_100060614 3300005356 Bacteria 2638
19 Ga0070674_100070481 3300005356 Bacteria 2470
20 Ga0070688_100046182 3300005365 Bacteria 2696
21 Ga0070659_100041535 3300005366 Bacteria 3596
22 Ga0070659_100154489 3300005366 Bacteria 1873
23 Ga0070667_100062944 3300005367 Bacteria 3143
24 Ga0070713_100048850 3300005436 Unclassified 3487
25 Ga0070700_100034074 3300005441 Bacteria 3072
26 Ga0070700_100055883 3300005441 Unclassified 2472
27 Ga0070678_100205551 3300005456 Unclassified 1628
28 Ga0070662_100104073 3300005457 Bacteria 2153
29 Ga0070699_100052564 3300005518 Bacteria 3525
30 Ga0070684_100000410 3300005535 Bacteria 29374
31 Ga0070672_100005765 3300005543 Bacteria 8256
32 Ga0070686_100007517 3300005544 Bacteria 6082
33 Ga0070695_100055219 3300005545 Unclassified 2559
34 Ga0070664_100000447 3300005564 Bacteria 31176
35 Ga0070664_100082513 3300005564 Bacteria 2772
36 Ga0070702_100028324 3300005615 Bacteria 3035
37 Ga0068859_100092945 3300005617 Bacteria 3068
38 Ga0068858_100046832 3300005842 Bacteria 4008
39 Ga0068858_100184622 3300005842 Bacteria 1970
40 Ga0068862_100009350 3300005844 Bacteria 8112
41 Ga0075365_10044393 3300006038 Bacteria 2912
42 Ga0075367_10046781 3300006178 Bacteria 2543
43 Ga0075428_100024499 3300006844 Bacteria 6679
44 Ga0075428_100030260 3300006844 Bacteria 5988
45 Ga0075428_100263552 3300006844 Bacteria 1855
46 Ga0075430_100001210 3300006846 Bacteria 20754
47 Ga0075430_100022839 3300006846 Bacteria 5320
48 Ga0075431_100081611 3300006847 Bacteria 3339
49 Ga0075431_100092644 3300006847 Bacteria 3119
50 Ga0075433_10029695 3300006852 Bacteria 4661
51 Ga0075433_10031753 3300006852 Bacteria 4517
52 Ga0075433_10130442 3300006852 Bacteria 2233
53 Ga0075433_10292735 3300006852 Bacteria 1442
54 Ga0075434_100007595 3300006871 Bacteria 10039
55 Ga0075434_100024029 3300006871 Bacteria 5952
56 Ga0075434_100344730 3300006871 Bacteria 1511
57 Ga0075429_100015717 3300006880 Bacteria 6558
58 Ga0097620_100092942 3300006931 Bacteria 3068
59 Ga0075435_100002055 3300007076 Bacteria 13183
60 Ga0105240_10121479 3300009093 Bacteria 3145
61 Ga0111539_10000690 3300009094 Bacteria 43742
62 Ga0111539_10012753 3300009094 Bacteria 10522
63 Ga0111539_10017666 3300009094 Bacteria 8830
64 Ga0111539_10032109 3300009094 Bacteria 6378
65 Ga0111539_10129056 3300009094 Bacteria 2961
66 Ga0111539_10444422 3300009094 Bacteria 1510
67 Ga0114129_10001909 3300009147 Bacteria 28420
68 Ga0114129_10022358 3300009147 Bacteria 8977
69 Ga0114129_10044314 3300009147 Bacteria 6258
70 Ga0114129_10104248 3300009147 Unclassified 3919
71 Ga0114129_10124484 3300009147 Bacteria 3545
72 Ga0105248_10053878 3300009177 Bacteria 4512
73 Ga0105248_10070833 3300009177 Bacteria 3915
74 Ga0105248_10247188 3300009177 Bacteria 2008
75 Ga0105249_10002582 3300009553 Bacteria 15674
76 Ga0157372_10220203 3300013307 Bacteria 2200
77 Ga0157375_10217248 3300013308 Bacteria 2070
78 Ga0163163_10000102 3300014325 Bacteria 90323
79 Ga0157380_10002378 3300014326 Bacteria 12641
80 Ga0157377_10107316 3300014745 Unclassified 1673
81 Ga0207688_10027420 3300025901 Bacteria 3133
82 Ga0207645_10023404 3300025907 Bacteria 4015
83 Ga0207645_10046787 3300025907 Bacteria 2763
84 Ga0207695_10143394 3300025913 Bacteria 2335
85 Ga0207662_10062931 3300025918 Bacteria 2230
86 Ga0207650_10164386 3300025925 Bacteria 1760
87 Ga0207700_10115088 3300025928 Unclassified 2171
88 Ga0207644_10012907 3300025931 Bacteria 5554
89 Ga0207690_10026897 3300025932 Bacteria 3629
90 Ga0207691_10001506 3300025940 Bacteria 23157
91 Ga0207711_10017890 3300025941 Bacteria 5889
92 Ga0207711_10079671 3300025941 Bacteria 2859
93 Ga0207711_10169400 3300025941 Bacteria 1981
94 Ga0207711_10224884 3300025941 Bacteria 1717
95 Ga0207689_10077543 3300025942 Unclassified 2731
96 Ga0207689_10133600 3300025942 Unclassified 2043
97 Ga0207661_10030556 3300025944 Bacteria 4151
98 Ga0207679_10171904 3300025945 Bacteria 1785
99 Ga0207651_10008276 3300025960 Bacteria 5608
100 Ga0207640_10029461 3300025981 Bacteria 3370
101 Ga0207678_10072808 3300026067 Bacteria 2944
102 Ga0207708_10003788 3300026075 Bacteria 11152
103 Ga0207708_10012858 3300026075 Bacteria 6243
104 Ga0207708_10043699 3300026075 Unclassified 3415
105 Ga0207675_100037687 3300026118 Bacteria 4510
106 Ga0207675_100165705 3300026118 Bacteria 2110
107 Ga0207675_100223870 3300026118 Unclassified 1813
108 Ga0207675_100344511 3300026118 Bacteria 1459
109 Ga0207683_10077852 3300026121 Bacteria 2937
110 Ga0207683_10292111 3300026121 Unclassified 1490
111 Ga0209983_1000833 3300027665 Bacteria 6752
112 Ga0209974_10013123 3300027876 Bacteria 2762
113 Ga0207428_10008115 3300027907 Bacteria 9515
114 Ga0207428_10041182 3300027907 Bacteria 3742
115 Ga0207428_10049821 3300027907 Bacteria 3354
116 Ga0268265_10030561 3300028380 Bacteria 3881
117 Ga0316579_10007581 3300031691 Unclassified 4489
118 Ga0307405_10056405 3300031731 Bacteria 2464
119 Ga0316577_10000575 3300031733 Bacteria 15031
120 Ga0307412_10011578 3300031911 Bacteria 5115
121 Ga0307409_100153841 3300031995 Bacteria 2001
122 Ga0307416_100054800 3300032002 Bacteria 3207
123 Ga0307416_100061637 3300032002 Bacteria 3062
124 Ga0307416_100113146 3300032002 Bacteria 2398
125 Ga0373934_0000973 3300035086 Bacteria 10378
126 Ga0373956_0001421 3300035119 Bacteria 9896
127 Ga0373955_0004815 3300035172 Bacteria 6012
128 Ga0373933_0003372 3300035724 Bacteria 8906
129 Ga0373937_0000353 3300036401 Bacteria 42704
130 Ga0316582_0051870 3300036647 Bacteria 2605
131 Ga0373925_0011073 3300037068 Bacteria 6550
132 Ga0451853_2717769 3300041512 Bacteria 2875
133 Ga0439435_0023841 3300042436 Bacteria 1610
134 Ga0453684_0212653 3300044712 Bacteria 2247
135 Ga0495592_0104643 3300046454 Bacteria 2012
136 Ga0495651_0018024 3300046462 Bacteria 5467
137 Ga0495586_0077863 3300046535 Bacteria 1819
138 Ga0496102_0003103 3300048905 Bacteria 14087
139 Ga0496103_0032310 3300048906 Unclassified 3194
140 Ga0496104_0030412 3300048907 Bacteria 5018
141 Ga0496105_0107089 3300048908 Bacteria 2307
142 Ga0496106_0083087 3300048909 Bacteria 2463
143 Ga0496108_0020575 3300048911 Bacteria 5423
144 Ga0496109_0001791 3300048912 Bacteria 17856
145 Ga0496111_0017551 3300048914 Bacteria 4948
146 Ga0496112_0057906 3300048915 Bacteria 3815
147 Ga0501034_0013373 3300049571 Bacteria 8448
148 Ga0501034_0016966 3300049571 Bacteria 7464
149 Ga0501034_0083747 3300049571 Bacteria 3191
150 Ga0501036_0154630 3300049572 Bacteria 1935
151 Ga0501039_0076576 3300049575 Bacteria 2601
152 Ga0501040_0021688 3300049576 Bacteria 4293
153 Ga0501072_0006456 3300049588 Bacteria 8928
154 Ga0501072_0079153 3300049588 Bacteria 2603
155 Ga0501073_0041341 3300049589 Bacteria 3257
156 Ga0501076_0030832 3300049592 Bacteria 4178
157 Ga0501076_0226858 3300049592 Bacteria 1527
158 Ga0501079_0053958 3300049741 Unclassified 3101
159 Ga0501079_0142074 3300049741 Bacteria 1870
160 Ga0501081_0068371 3300049743 Bacteria 2473
161 Ga0501081_0156020 3300049743 Unclassified 1642
162 Ga0501045_0040835 3300049824 Bacteria 3374
163 nmdc:mga03683_84597_c1 3300050489 Bacteria 1375
164 nmdc:mga0yw44_52833_c1 3300050492 Bacteria 2465
165 nmdc:mga06z11_23626_c1 3300050494 Bacteria 2891
166 nmdc:mga05p37_3085_c1 3300050507 Bacteria 19352
167 nmdc:mga05p37_9_c1 3300050507 Bacteria 151480
168 nmdc:mga0qj67_26980_c1 3300050509 Bacteria 4449
169 nmdc:mga06r32_77425_c1 3300050510 Bacteria 3231
170 nmdc:mga06r32_94232_c1 3300050510 Bacteria 2930
171 nmdc:mga08y16_53328_c1 3300050511 Bacteria 4229
172 nmdc:mga08y16_634_c1 3300050511 Bacteria 32992
173 nmdc:mga0n895_281225_c1 3300050512 Bacteria 1687
174 nmdc:mga0n895_31467_c1 3300050512 Bacteria 5081
175 nmdc:mga0rr50_588_c1 3300050513 Bacteria 19495
176 nmdc:mga0a205_252208_c1 3300050515 Bacteria 1644
177 Ga0495619_0069522 3300053085 Bacteria 2354
178 Ga0495619_0080817 3300053085 Unclassified 2188
179 Ga0501082_0156389 3300060353 Bacteria 1981
180 Ga0075431_100036290
181 Ga0065715_10002370
182 Ga0070676_10010617
183 Ga0070683_100002078
184 Ga0070690_100051337
185 Ga0070670_100004023
186 Ga0070670_100055698
187 Ga0070670_100075513
188 Ga0070670_100088931
189 Ga0070670_100224550
190 Ga0070689_100032374
191 Ga0070687_100012360
192 Ga0070661_100020213
193 Ga0070668_100201033
194 Ga0070675_100163197
195 Ga0070671_100008622
196 Ga0070674_100055285
197 Ga0070674_100060614
198 Ga0070674_100070481
199 Ga0070688_100046182
200 Ga0070659_100041535
201 Ga0070659_100154489
202 Ga0070667_100062944
203 Ga0070713_100048850
204 Ga0070700_100034074
205 Ga0070700_100055883
206 Ga0070678_100205551
207 Ga0070662_100104073
208 Ga0070699_100052564
209 Ga0070684_100000410
210 Ga0070672_100005765
211 Ga0070686_100007517
212 Ga0070695_100055219
213 Ga0070664_100000447
214 Ga0070664_100082513
215 Ga0070702_100028324
216 Ga0068859_100092945
217 Ga0068858_100046832
218 Ga0068858_100184622
219 Ga0068862_100009350
220 Ga0075365_10044393
221 Ga0075367_10046781
222 Ga0075428_100024499
223 Ga0075428_100030260
224 Ga0075428_100263552
225 Ga0075430_100001210
226 Ga0075430_100022839
227 Ga0075431_100081611
228 Ga0075431_100092644
229 Ga0075433_10029695
230 Ga0075433_10031753
231 Ga0075433_10130442
232 Ga0075433_10292735
233 Ga0075434_100007595
234 Ga0075434_100024029
235 Ga0075434_100344730
236 Ga0075429_100015717
237 Ga0097620_100092942
238 Ga0075435_100002055
239 Ga0105240_10121479
240 Ga0111539_10000690
241 Ga0111539_10012753
242 Ga0111539_10017666
243 Ga0111539_10032109
244 Ga0111539_10129056
245 Ga0111539_10444422
246 Ga0114129_10001909
247 Ga0114129_10022358
248 Ga0114129_10044314
249 Ga0114129_10104248
250 Ga0114129_10124484
251 Ga0105248_10053878
252 Ga0105248_10070833
253 Ga0105248_10247188
254 Ga0105249_10002582
255 Ga0157372_10220203
256 Ga0157375_10217248
257 Ga0163163_10000102
258 Ga0157380_10002378
259 Ga0157377_10107316
260 Ga0207688_10027420
261 Ga0207645_10023404
262 Ga0207645_10046787
263 Ga0207695_10143394
264 Ga0207662_10062931
265 Ga0207650_10164386
266 Ga0207700_10115088
267 Ga0207644_10012907
268 Ga0207690_10026897
269 Ga0207691_10001506
270 Ga0207711_10017890
271 Ga0207711_10079671
272 Ga0207711_10169400
273 Ga0207711_10224884
274 Ga0207689_10077543
275 Ga0207689_10133600
276 Ga0207661_10030556
277 Ga0207679_10171904
278 Ga0207651_10008276
279 Ga0207640_10029461
280 Ga0207678_10072808
281 Ga0207708_10003788
282 Ga0207708_10012858
283 Ga0207708_10043699
284 Ga0207675_100037687
285 Ga0207675_100165705
286 Ga0207675_100223870
287 Ga0207675_100344511
288 Ga0207683_10077852
289 Ga0207683_10292111
290 Ga0209983_1000833
291 Ga0209974_10013123
292 Ga0207428_10008115
293 Ga0207428_10041182
294 Ga0207428_10049821
295 Ga0268265_10030561
296 Ga0316579_10007581
297 Ga0307405_10056405
298 Ga0316577_10000575
299 Ga0307412_10011578
300 Ga0307409_100153841
301 Ga0307416_100054800
302 Ga0307416_100061637
303 Ga0307416_100113146
304 Ga0373934_0000973
305 Ga0373956_0001421
306 Ga0373955_0004815
307 Ga0373933_0003372
308 Ga0373937_0000353
309 Ga0316582_0051870
310 Ga0373925_0011073
311 Ga0451853_2717769
312 Ga0439435_0023841
313 Ga0453684_0212653
314 Ga0495592_0104643
315 Ga0495651_0018024
316 Ga0495586_0077863
317 Ga0496102_0003103
318 Ga0496103_0032310
319 Ga0496104_0030412
320 Ga0496105_0107089
321 Ga0496106_0083087
322 Ga0496108_0020575
323 Ga0496109_0001791
324 Ga0496111_0017551
325 Ga0496112_0057906
326 Ga0501034_0013373
327 Ga0501034_0016966
328 Ga0501034_0083747
329 Ga0501036_0154630
330 Ga0501039_0076576
331 Ga0501040_0021688
332 Ga0501072_0006456
333 Ga0501072_0079153
334 Ga0501073_0041341
335 Ga0501076_0030832
336 Ga0501076_0226858
337 Ga0501079_0053958
338 Ga0501079_0142074
339 Ga0501081_0068371
340 Ga0501081_0156020
341 Ga0501045_0040835
342 nmdc:mga03683_84597_c1
343 nmdc:mga0yw44_52833_c1
344 nmdc:mga06z11_23626_c1
345 nmdc:mga05p37_3085_c1
346 nmdc:mga05p37_9_c1
347 nmdc:mga0qj67_26980_c1
348 nmdc:mga06r32_77425_c1
349 nmdc:mga06r32_94232_c1
350 nmdc:mga08y16_53328_c1
351 nmdc:mga08y16_634_c1
352 nmdc:mga0n895_281225_c1
353 nmdc:mga0n895_31467_c1
354 nmdc:mga0rr50_588_c1
355 nmdc:mga0a205_252208_c1
356 Ga0495619_0069522
357 Ga0495619_0080817
358 Ga0501082_0156389

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00324

AA_permease

Amino acid permease

47

451

0.84

PF13520

AA_permease_2

Amino acid permease

43

465

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
6f2g-assembly1.cif.gz_A bacterial asc transporter crystal structure in open to in conformation 0.8678 28 423
7nf6-assembly1.cif.gz_B ovine b0,+at-rbat heterodimer 0.8527 26 419
8a6l-assembly1.cif.gz_B human 4f2hc-lat2 heterodimeric amino acid transporter in complex with anticalin d11vs 0.8462 27 420
6li9-assembly1.cif.gz_B heteromeric amino acid transporter b0,+at-rbat complex bound with arginine 0.8363 26 418
7dsk-assembly1.cif.gz_B overall structure of the lat1-4f2hc bound with jx-075 0.833 20 418
ID Description Score Start End Superfamily
af_A0A0B4KHK8_45_488_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8789 24 420 1.20.1740.10
af_Q2FYJ4_6_440_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8757 21 425 1.20.1740.10
af_Q8IR48_79_518_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8732 21 418 1.20.1740.10
af_H2KZG9_3_457_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.87 22 420 1.20.1740.10
af_Q50E62_26_473_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8666 21 418 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A833HHM0-F1-model_v4 Amino acid permease 0.9289 203 427 GO:0005886
GO:0015179
AF-A0A257VIX1-F1-model_v4 Amino acid permease 0.9256 206 426 GO:0005886
GO:0015179
AF-A0A2V6EVC9-F1-model_v4 Amino acid transporter 0.9182 15 420 GO:0005886
GO:0015179
AF-A0A3N5ZAR6-F1-model_v4 Amino acid permease 0.9149 233 426 GO:0005886
GO:0015179
AF-A0A257VIX1-F1-model_v4 Amino acid permease 0.9137 206 426 GO:0005886
GO:0015179

Map